Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      --------->CCA1(2)                                                                                   <---------ARR14(2)                                             --------->At4g35610      --------->ANAC58                                   <---------At4g35610                --------->ANAC58                                   <---------ZAT2                   <---------AtLEC2<------ZmHOX2a(2)                                   --------->At4g35610   ----------->HVH21         <---------ARR11(3)                                   --------->ZAT2        ------>ZmHOX2a(1)         --------->ARR14(2)                                --------->ABI4(2)        ==================================HOX2a_HOX2a         <-----------HVH21      <---------At4g35610      ----------->TGA1   <---------ZAT6        --------->ANAC46        <---------ZAT2         ------>ZmHOX2a(2)    --------->ALFIN1       --------->MYB46(3)      --------->ALFIN1 --------->MYB52(1) <------NtERF2   --------->AGP1    <-----------GT1         <---------DEAR3(1)<---------MYB59    --------->ANAC58  --------->ARR11(3) ----NtERF2            ---------->DOF2       <---------At4g35610 --------->ANAC58----------->ARR10   atcgaattacccatcacagtacatacaaagacggtgctgctgagtttagctaactgatcctgacgactcggcatggaagtgttgagatccacagagagtt  19314200                                                                                                -----                                                                                                <----                                                                                                <----                                                                                                -----                                                                                                <----                                                                                               ------                                                                                               ------                                                                                             ------>ZmHOX2a(2)                                                                                             <-------                                                                          --------->ETT(1)  <------ZmHOX2a(2)                                                                          <---------ANAC46 <---------ARR14(2)                               <-------GAMYB                             <------NtERF2     <---------ARR11(3)                              <---------ANAC58                          <-----------HVH21  --------->ARR11(3)                              <---------ANAC46                         --------->ALFIN1    --------->ARR14(2)                           --------->ALFIN1                        <---------LBD16  --------->REM1(2)                         <---------O2                          --------->ARR14(2) --------->LBD16 ---                       <---------ZAT14      --------->ARR11(3) <---------ARR14(2)<---------ANAC58 <--              ---------->DOF2 <---------ANAC58                 --------->GLK1(2) <---------ANAC58----   <---------ETT(1)    --------->ZAT14      <---------ARR11(3)<---------GLK1(2)  <---------ANAC46----   tgattccgacagcgatgaaagtcagagaagtggcgttgagagagaagaacttacagggaaaccagaatttgcggtgtcggaagccgtgtataagatcggc  19314300 ---->DEAR3(1) -----DEAR3(1)                                                                                      < -----ATERF1(2)                                                                                     - ---->ATERF1(2)                                                                                    <- -----RAP2.6(2)              --------->ANAC58                                                    <--- --->ATERF1(1)               --------->ANAC58          --------->MYB52(1)                        ---- --->At4g35610              <---------LBD16        <---------TOE1(2)                            <---- --DEAR3(1)    --------->At4g35610             <---------ATHB12                                 <---- --->NtERF2    <---------At4g35610            ------>MYB46(1)                                  <----- ----NtERF2  <-----------RAV1(2)             --------->WOX13(1)--------->At4g35610             <----- -->NtERF2 ----------->RAV1(1)     <---------ANAC46<---------TOE2(2)       --------------------->WRI1 ----->RAP2.6(2)        <---------------AtSPL3------>MYB83     <---------At4g35610             <-----   ggccatggctagaccacagatgagtgaagctacggcaacgtagataccaatcgaaggtaagggtttgctgaactctgcatcgttcaaatcgccatgggcg  19314400          <---------GLK1(1)         <---------ARR14(2)         --------->ARR14(2)        <------ZmHOX2a(1)     --------->LBD16    --------->DEAR3(1)  <---------ZAT2  --------->At4g35610  --------->ZAT2  <---------At4g35610  ------>NtERF2 --------->DEAR3(1) -----------RAV1(2) -------->ATERF1(1) --------ATERF1(1) ---NtERF2--------->GLK1(1)                    <---------ARR11(3) ----->ATERF1(1)                            --------->DAG2                        ------>ZmHOX2a(2) -------HVH21                              ---------->DOF2                 --------->ATHB12    <----- -----ATERF1(1)                 <---------ARR14(2)                        --------->ICU4  <---------bZIP60(1) ----ANAC58                  <---------TOE2(3) --------->ARR11(3)   --------->AtLEC2      --------->bZIP60(1) ----ANAC58       --------->WOX13(1)   ------>ZmHOX2a(2)    --------->WRKY38(1) <---------ARR11(3)<-- ----DEAR3(1)   <---------ATHB12--------->ARR14(2)          --------->WRKY12    --------->ARR11(3)---   tcgcagccgaggatacccatcaatcgaattcaaggatttgatcgaaaaagctcttcttcaagttgactccatggaaatgagtgatcttgttgacatcatt  19314500                                                                    --------->ZAT14                                                                    <---------ZAT18                                                                  --------->ANAC46                                                                <-----------GT1          --------->DAG2        --------->WRKY12           <---------DAG2 ----YAB1---------->DOF2        ----------->HVH21        -------->P <---------ZAT14 -------HSFB2a(2)           <---------ZAT14              ------>MYB83<---------ALFIN1              <- ------>HSFB2a(2)    <----------DOF2  <---------GLK1(2)  ------>MYB46(1)       ----------->HVH21  <--   ctagagactggaaaagtagcaaactttgacttctctgaccgattttgagcacaaattccaacctttctactacactcttctatgaccatttcaactaaat  19314600                               --------->LBD16                              --------->LBD16                              ----------->GT1                             <---------LBD16                             ------->GAMYB                            <---------LBD16                            <---------LBD16                          <---------ANAC46                           -------->P   --------->MYB52(1)           <---------ANAC58  <---------ARR14(2)    <------ZmHOX2a(2)                            <---------ANAC58  --------->ARR14(2)   <---------ARR14(2)               <---------ARR14(2)                         <- --------ANAC46        --------->ARR14(2)   *TSS ---------->DOF2  <----------DOF2 ---------->DOF2 --- -------LBD16         --------->At4g35610<---------LBD16--------->ARR14(2)<---------ANAC46  <--------   ttcggatagacactgttgaatcgcagatcaaccgggaaaaactcacgggaagaaagtgtttctgcctgctttcgtggagtttggaaaaggcctggagtga  19314700                                                          -------->HAHB4                                                          <---------ICU4                  -------->HAHB4                          --------->YAB1      --------->YAB1                                     --------->ICU4     <---------ATHB12                                    <---------YAB1     <---------YAB1                                    -------->HAHB4                         -------    ------>MYB83  <---------ICU4                       --------->YAB1                         <------    <-----------HVH21                                  <---------ICU4                        --------    ------>MYB46(1)      ------------>CBF             <---------ATHB51         <---------ANAC58 --------ALFIN1   --------->YAB1                    --------->YAB1             <---------ANAC58    <- --->ZmHOX2a(2)  --------->ICU4                 ----------->GT1  ----------->GT1      ----------->GT1 -ANAC46     <---------MYB59           <-----------GT1--------->ICU4      <----------DOF2--------->AHL20(2)   tccacctatcatgggcctaataatcggcccaattagttttgttactggatgtgttaataatgatgaagagtagaaactttgacttgtctgataaaatgat  19314800                                                                         ------>ZmHOX2a(2)                                                                        <------ZmHOX2a(2)                                                                       --------->ARR11(3)                                                                       <---------ARR14(2)                                                                       --------->ARR14(2)                                                                       <---------ARR11(3)                                                                      <------ZmHOX2a(1)                                                         <------ZmHOX2a(2)                                                         ====================HOX2a_HOX2a                                                         =================HOX2a_HOX2a                                                  ----------->HVH21 <---------TOE1(2)                                                <---------ANAC58    <---------TOE2(2)     <----------DOF2                            <---------ANAC46   =============HOX2a_HOX2a -->YAB1                             --------->MYB59   --------->At4g35610 ---ICU4                        <------ZmHOX2a(1)<---------WOX13(1)------>ZmHOX2a(1) ->ICU4 --------->YAB1          ================================HOX2a_HOX2a --------ALFIN1               <---------TOE2(3) <---------ANAC58  --------->TOE1(2)  <-----------GT1   cacactcctttcatgaccatttcgattcaattgaggaattaggcactgttgagtgacagatcaaatgtcctaggatctataaacaattgacattccatgg  19314900                                    <---------ATHB12                                   ------>MYB46(1)                                   ------>MYB83                                  --------->WOX13(1)                           <---------ICU4                           --------->YAB1                          <---------YAB1                  <---------MYB52(1)                        <---------ICU4               <------ZmHOX2a(2)                     ----------                        --------->YAB1              --------->ARR14(2)        --------->ZAT2        <                       <---------ATHB12    --------->KAN4(2)                  <---------ZAT2   ------    <----------DOF2    --------->ICU4--------->YAB1 <---------ARR14(2)        --------->At4g35610   <  --------->At4g35610--------->WOX13(1)----------->GT1------>ZmHOX2a(2)       <---------At4g35610   <   aatcagctttagggggttttgagcaatcatcatcaccaatcaggttattcgagggatccagtttgtttgtttttgaattcagcttaggggaacaaaagag  19315000    ----------->GT1  >>>>>>>>>ARR1  >>>>>>>>>ARR2 >DOF2 ---------TOE1(3)           <---------ANAC55(2) ----->GT1                  --------->ANAC55(2)                            --------->ANAC58 ---------TOE2(3)       ------->TEIL                    <------ZmHOX2a(1)  --------->ANAC46 ---------YAB1  ----------->HVH21                ---------->DOF2           --------->ANAC58    ------   ttaagattgtgaaaacaaatgacatgaatcacttgattcgatagcaaacacaaaagcaggactaatctctctcacacacacaatgtctcaacttaaacag  19315100  Previous    Next  AGI:  At5g47580.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G17250.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71257.1); similar to hypothetical protein 40.t00008 [Brassica oleracea] (GB:ABD65133.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16486.1) Range:  from: 19312072    to: 19314644    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g47590.1    Description:  heat shock protein-related. similar to heat shock protein-related [Arabidopsis thaliana] (TAIR:AT4G16550.1); similar to hypothetical protein 25.t00003 [Brassica oleracea] (GB:ABD64966.1); contains InterPro domain HSP20-like chaperone (InterPro:IPR008978); contains InterPro domain Small heat shock protein, predicted, plant (InterPro:IPR016952); contains InterPro domain Peptidase A1; (InterPro:IPR001461) Range:  from: 19315043    to: 19316378    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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