Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     <---------------AGL15                <---------ARR11(3)                --------->ARR11(3)          ----------->GT1                                       ----------->GT1      <---------ARR14(2)                                        --------->ANAC58      <---------ARR11(3)                                 --------->YAB1                    <------ZmHOX2a(2)    ----------->ARR10                                   <---------ATHB12                  <---------ARR11(3)   <------ZmHOX2a(1) <----------DOF2                    <<<<<<<<<ARR2                     --------->ARR11(3) ------ZmHOX2a(1)  --------------->AGL15              --------->WOX13(1)   <---------GLK1(2) >DOF2--------->ARR11(3)---------->DOF2     <---------YAB1      --------->ANAC58<-----------GT1   aaggaggagatattgtaagaactctttaaagcaaaaacagagcattgtaatagaaacaatcaaaccaagtaaaaacagaattttacatgagagatcatca  19296600                      <------ZmHOX2a(2)                                   --------->YAB1                     --------->ARR11(3)                                   <---------ICU4                     <---------ARR11(3)                                  --------->ICU4               <---------REM1(1)             --------->ANAC58        --------->ANAC58             <---------At4g35610             --------->ANAC46        --------->ANAC58             --------->At4g35610         --------->ANAC58        --------->ARR11(3)           <-----------RAV1(2)           --------->ANAC46       --------->YAB1          <---------MYB52(1)             --------->ANAC58 --------->TOE2(3) <---------YAB1         <-----------HVH21          <-------TEIL ----------->GT1<---------ICU4                     <-        --------->ANAC46        <-------TEIL --------->ANAC58  <---------YAB1                     <--   cattacattcccgtcagatgtaagatcacacacatacatacacacacaagacagagaaaacgttgatgatcacgaattatgaagacccattagacaaaac  19296700                                                                          --------->ZAT18                                   ----------->GT1                        <---------ZAT14                                --------->DAG2                            --------->ZAT14                            --------->YAB1                         --------->HSFB2a(2)          --------->ANAC58  <---------ICU4                         <---------HSFB2a(2)          --------->ANAC58 <---------YAB1                         <---------LBD16                 --- -----ZmHOX2a(1)         --------->YAB1                          <---------LBD16<------ZmHOX2a(1) <-- --------ID1           <---------KAN4(2)  ----------->GT1 <----------DOF2--------->ALFIN1  <---------   aggacaaaaaactcgcatttacagggataatcataaggggaaaattgagaaaaaccttctctttattctcgggaagtgcagaggaaaacaaaattacctt  19296800                                                                              --------------->AGL15                                                                              <---------------AGL15                                                                             ----------------->AGL2                                                                             ----------------->AGL1                                                                             <-----------------AGL2                                                                             ----------------->AG                                                                             ----------------->AGL3                                                                             <-----------------AGL1                                                                             <-----------------AGL3                <---------TOE2(3)                                           =========================               ---------->DOF2                                              ------>ZmHOX2a(2)              --------->AHL20(2)                                           ==========================          --------------->AGL15                                --------->ANAC58          ====================================================================================MADS_MADS     ----------->RAV1(1)                                       --------->ANAC46  --------->ANAC58                                ---------->DOF2          <------ZmHOX2a(2)  --------->ANAC46                             <------ZmHOX2a(2)          <---------ARR11(3)  --------->ANAC58                            ------->TEIL     --------->ANAC58 ------>HSFB2a(2)              --------->TOE1(2)------>ZmHOX2a(2)         --------->ARR11(3)       -- -------HSFB2a(2)  --------->ARR11(3)         --------->ARR14(2)         <---------GLK1(1)       ---- --GT1 <---------ALFIN1 <---------LBD16       <---------ARR14(2)         --------->GLK1(1)       ----   gtggaagcaacaccgattaaagaaattggggaacatgggaatggaatggatccaaagagaagaaaacgaaacaagagatcccaaaaatggaatcggaaaa  19296900          --------->ANAC46          --------->ANAC58   <------ZmHOX2a(1)         ---------->DOF2 =========HOX2a_HOX2a    --------->GLK1(1)                                           ---------------- =========HOX2a_HOX2a--------->LBD16--------->ANAC46                        --------->LBD16         < -------->DOF2      <---------HSFB2a(2)     --------->ZAT6     ---------->DOF2      <-----------GT1<- ----->ANAC58       --------->HSFB2a(2) --------->At5g28300    *TSS      --------->MYB52(1)        <- ----->ANAC58      <---------LBD16  --------->ANAC58<------NtERF2  ---------->DOF2 <-----------GT1 --   cgaaaggattcaacgccttcttctgggaaatcaaagacacgcagtaactctggcagagagagagagaaagaaagagaccggagtttttccatttcggttc  19297000        -------->HAHB4        <---------ICU4        --------->YAB1       <---------ATHB51  ----------->GT1  <------MYB46(1)  <------MYB83                 <---------ARR11(3)                                            <------- ->AGL1--------->ICU4          --------->ARR11(3)                                         <---------ALFIN1 ---------WOX13(1)        --------->AHL20(2)                                            <---------At5g28300 --------ARR14(2)      --------->YAB1                                           <----------DOF2 -----------CBF   --------->At4g35610           ------->TEIL       <---------YAB1      <-----------GT1 ------->ARR14(2) <---------At4g35610 <---------ZAT18            <-----------GT1<---------DAG2<------   ggattggtaataatgggctcagcaaaaataaaacatcttgggcccttatggaccctcttaccctattttaccataggctctacttttttttaccaccttt  19297100                                                       <---------ZAT14                                                       --------->ZAT14                                        ----------------->AGL1                                       <---------DOF5.7(2)   <---------MYB52(1)                                       <---------At5g28300 <---------ZAT6                                      <-----------GT1--------->ANAC46                                  --------->DAG2  --------->ZAT14 --------->ATHB12                                 ---------->DOF2  <---------ZAT18 <---------AHL20(2)                <                           <------ZmHOX2a(1)      <---------ZAT14<---------AHL20(2)                <-                          ----------->GT1         --------->ZAT18--------->AHL20(2)          <------- --DAG2                  <---------TOE1(3)    <---------------AtSPL8        ----------->RAV1(1) <---- ----DOF2                <---------TOE2(3)    --------------->AtSPL8     --------->ANAC46  --------->YAB1   gttttagtttcacttaaaattttagttaaggaaaaaaaagttaccgattatgtacactctactgttatttattagacacaacaaaactttcaaatatgat  19297200                               --------->AHL20(2)                              --------->ARR11(3)                              <---------AHL20(1)                              --------->AHL20(1)                              <---------ARR11(3)              --------->AHL20(2)              <---------AHL20(1)                             --------->ANAC46    <---------HSFB2a(2)  <-----------GT1      ---------->DOF2              --------->MYB46(3)           --------->HSFB2a(2) ---------GLK1(1)    <---------YAB1                 <---------MYB52(2)        ------>ZmHOX2a(1) --------GLK1(2)   --------->YAB1  <---------AHL20(2)   --------->ZAT6     <---------YAB1 --YAB1   ------>ZmHOX2a(1)--------->AHL20(2)  --------->TOE2(3)          <-----------GT1 -----WOX13(1)<---------AHL20(2)   --------->AHL20(2)------->GAMYB     <---------GLK1(2)   ggattttccatcctattttatttataaaagaaaatatttatatttctaacatcaacaaactctacccaaatcagattatccttctgaaactatgcaattt  19297300                                           <----------DOF2                                   ----------->GT1                                   --------->YAB1                             <----------DOF2                                --------->YAB1                           <----------DOF2                                <--------ATHB1                        --------->ARR11(3)                                <---------ICU4                        <---------ARR11(3)           <------ZmHOX2a(1)    --------->ATHB51                     <---------CCA1(2)          --------->ANAC46     <---------ATHB51                --------->AHL20(1)  <-----------GT1        <---------LBD16        <---------AHL20(2)  --------->YAB1   <---------AHL20(2)          -----   gtattgtttttcaggaaactagtgattttttgaataattgtaatacttttcattcatcaaaaaaacatattatatctttcctttttttccatcaaaaaca  19297400                                                                                                 ----                                                                                                <----                                                                                            =========                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          ---------                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <xxxxxxxxxx                                          --------->ZAT6                            --------->At4g35610                                        <-----------GT1                             <---------At4g35610             <-----------------AGL2    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        <---------ZAT2           <---------ARR11(3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          --------->ZAT2           --------->ARR11(3)      <---------YAB1         ---------->DOF2      xxxxxxxxxxxxxxxxxxxxxx          --------->CCA1(1)      --------->YAB1     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ANAC46          --------->RVE1(1)     <---------YAB1---------->DOF2            <xxxxxxxxxxxxxxxxsmallRNA(i)     >>>>>>>>>RAP2.2     <---------MYB46(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------CCA1(2)     <--------P --------->ICU4  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxx <---------AHL20(2)    <-------GAMYB<---------ICU4<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->REM1(1) ---->AHL20(1)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           <xxxxxxxxxxxxxxxxsmallRNA(i)   tattatatctaaatatctcattttgggttgttttttgataattaacacttaagcccatataaaagagtctagttcaaactgagcccagctacaccaaaga  19297500  Previous    Next  AGI:  At5g47520.1    Description:  AtRABA5a (Arabidopsis Rab GTPase homolog A5a); GTP binding. similar to AtRABA5d (Arabidopsis Rab GTPase homolog A5d), GTP binding [Arabidopsis thaliana] (TAIR:AT2G31680.1); similar to Ras-related GTP-binding protein, putative [Brassica oleracea] (GB:ABD64936.1); contains InterPro domain Rab11-related (InterPro:IPR015595); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579) Range:  from: 19294588    to: 19296963    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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