Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                              -------                                                                                              <------                                                                                              <------                                                        <------MYB83                          -------                                           <-----------RAV1(1)                     <---------At4g35610                               --------->TOE1(2)<---------ANAC58                   --------->At4g35610    --------->ALFIN1          --------->At4g35610       <------MYB46(1)            <---------ZAT2 <--  --------->ALFIN1           --------->GLK1(2)  <---------ANAC58                 <-----------RAV1(2)  --------->CCA1(2)        <---------GLK1(1)<-------GAMYB                   <-----------RAV1(1)<----- --------->ARR11(3)        <---------At4g35610  <---------ANAC46  ===========================RAV----- --------->ARR10    --------->ARR14(2)  --------->GLK1(2)         --------->ALFIN1 --------->ZAT2<--- -->LBD16           <---------ARR14(2) --------->ARR11(3)         <-----------RAV1(1) --------->At4g35610 ---RAV1(2)        <------ZmHOX2a(1) ----------->ARR10 <---------AtMYB61    =================RAV----- -HVH21         <---------AtLEC2  <---------ANAC46     --------->ALFIN1     --------->ALFIN1 --------   gaagatgtgggaaacgttgcaggacctggagatgctgcgaagatgctgttgcgagggatggtgatggtatgtggcacagtgttgcagctgatgagaagat  19249700  --------->ARR14(2)  <---------ARR14(2) ---->CCA1(2) ----GLK1(2) --->ARR14(2) --->ARR11(1) -->HSFB2a(1) ---HSFB2a(1) ---HSFC1(2) -->HSFC1(2) -------LBD16 ----ARR14(2)                                   <----------DOF2                  ---------->DOF2 ---->GLK1(2)                              <---------At4g35610         <---------ANAC58 ----TEIL                              --------->GLK1(2)               <---------ANAC46             - ---->ARR14(1)  <---------LBD16    --------->DAG2                 ------>ZmHOX2a(1)--------->DAG2  <- --->ARR10 --------->WOX13(1)     ---------->DOF2     <-----------GT1  <---------ANAC58          ----   tcgggattcgagtcaatcttcgggttatggcttcaaaaaagtttctgatgcttttatttctctatgtcctgtttcttgtagtcaaaagggtagtcacaag  19249800       <--------P     <------MYB83     <------MYB46(1)    --------->MYB59    --------->MYB111(1) -------->ATHB12          ----------->GT1 --------YAB1<---------ANAC58             ----------->GT1                                     ------- ----->YAB1  <---------ANAC58  ---------->DOF2---------->DOF2         <---------ANAC46 <------ZmHOX2a(1)   gatgatttggtagatgggtgtccaaaatgtgttaaaagttgaagaagtaaaaggaaatagacactctaactcgcgtagagcgtttgataggaattggaaa  19249900                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                     --------->YAB1                                                                                ------------>CBF ----                                                                                --------->MYB46(3)                                                                           <-----------GT1    <------      --------->ANAC55(2)                                             <---------ANAC58        <------      --------->ANAC46                                                <---------ANAC58        <------      --------->ANAC58                                            <----------DOF2   <---------ATHB12      --------->ANAC58                                      <---------ANAC58   --------->ANAC58  ----    <-----------GT1                <-----------GT1          <---------ANAC58   --------->ANAC58  ---- --->DOF2                   ----------->GT1                 <---------ANAC46   --------->ANAC46  ----   gcttatttacgaaacagggactgagttttttggtaatttacatgttcgcattacaaattgaagcgtgtctttacttgttacaaccaatgagaatggtcca  19250000               <-----------HVH21             ------->MYC3             <-------MYC3             ------->MYC4             <-------MYC4            --------->ANAC55(2)            --------->ANAC46            --------->TGA1a          --------->MYB46(3)            --------->O2             <---------MYB55(2)            <---------O2            --------->ANAC46         <---------REM1(2)        <---------ALFIN1        <-----------------PIF3(1)--------->MYB46(3)  <---------ATHB12              <------ZmHOX2a(2)                    ------>NtERF2 ----->ANAC58<-------MYC2       --------->CCA1(2)                 --------->At4g35610 ----->ANAC46------->MYC2      <---------ARR14(2)                 <---------At4g35610 ------ANAC55(2)               --------->ARR14(2)                <---------DEAR3(1) ----->ANAC55(2)       ------------>CBF                      --------->SPL7 ---WRKY12  <---------TGA1a    --------->ARR11(3)           <---------MYB52(1) ---WRKY38(1)<-------PIF5      <---------ARR11(3)          <---------SPL7  --------->YAB1 ---WRKY45<---------ALFIN1     --------->AGP1             <---------MYB46(3)                 <<<<<<<< ----->ANAC58------->PIF5   --------->YAB1                --------->MYB55(2)                 <<<<<<<< ----->ANAC55(1)   <---------At4g35610            <-------TEIL *TSS --------->WRKY38(1)     ------>MYB83 ----->bZIP60(2)   --------->At4g35610     --------->At4g35610--------->MYB52(2)            ------>MYB46(1)   cgtaatcagtctccacgtgtcatctgccaataagatccacccatcagcaaaattcatcggtcgttcgtcgctgactatcacaattccgaacaccaaattt  19250100                                                                             --------->ARR14(2)                                                                             <---------ARR14(2)                                                                             --------->GLK1(2)                                                                        <---------ANAC46                                                                      <-----------HVH21                                                                     <-----------RAV1(1)                                                                    ===============================HOX2a_HOX2a                             --------->TOE1(2)                      ------>ZmHOX2a(2)                             <---------SPL7                        ================================HOX2a_HOX2a                            ------>ZmHOX2a(2)                      <------ZmHOX2a(2)                        ----------->HVH21                         <---------ARR11(3)                       ------>ZmHOX2a(2)                          --------->ARR11(3)               <----------DOF2                  --------->GLK1(1) <---------AGP1             <-------  <---------ARR14(2)  --------->At4g35610  ----------->GT1        --------->AGP1            =========  --------->ARR14(2)  <---------At4g35610  --------->LBD16        --------->ARR14(2)        ========= <CBP60g      <---------ANAC58           <---------LBD16          <---------ARR14(2)        ------>ZmHOX2a(1) <SARD1       <---------ANAC58         <---------WRKY18(1)       <---------CCA1(2)  ---------->DOF2   cgaatttctgccacttgctttgtgatctgatcgttcgaaattgaccggagaattcttctgtgttcttagatctgtcgcgaatttgttaaagctcctcaga  19250200                    <-----------RAV1(1)              ------>ZmHOX2a(2)             <------ZmHOX2a(2)            <---------ARR14(3)            <-----------ARR10            <---------GLK1(2)            --------->AGP1            --------->ARR14(3)                       <-----------GT1            --------->ARR11(3)                  <---------MYB52(1)            --------->ARR14(2)            <---------At4g35610            <---------ARR11(3)            <------NtERF2           <---------CCA1(2)              --------->At4g35610                      --------->ZAT2    <---------MYB46(3)                    --------->ATERF1(1)                    <-----------RAV1(2) ----RAV1(2)<---------ARR14(2)           <---------ATERF1(1)                   -------->P           - ====================HOX2a_HOX2a         --------->RAP2.6(2)                 <---------ETT(2)       < ===================HOX2a_HOX2a         <---------RAP2.6(2)           <---------DAG2 --------->ALFIN1   aggttttggttacagatcttctctgtggtcttcaccactatggccgctccgtttttttcaactccatttcagccttatgtctaccaggtgtgcttcttct  19250300                               <---------ANAC58              <----------DOF2  <---------ANAC58      <---------ICU4   --------->YAB1   --------->YAB1     --------->ICU4       --------->MYB52(2)        <-------TEIL -------------------->WRI1 <---------AtMYB61                     <---------TOE1(3) ----------DOF2  --------->YAB1<---------ANAC46                  <---------TOE2(3)<------ZmHOX2a(1)   ctctttgatcatttcgctttcaaaatgatgaggtcgtgttcttcttagttgcaatttgactaaatttgaggttcattgtaagtaggatttagagaaattc  19250400                                                            --------->YAB1                                                            <---------ICU4                   <---------ZAT2                          <------ZmHOX2a(2)                   --------->ZAT2                         --------->ARR11(3)                   <---------At4g35610     --------->WOX13(1)                --------->ZAT14             <-----------GT1 --------->ANAC58             <---------ARR11(3)<---------ZAT6    --------->ATHB12         --------->ANAC58   <---------TOE2(3)           <-----------RAV1(1) <----------DOF2   --------->At4g35610   <-----------------AGL2          >>>>>>>ZML2   catctttgattagtttaacttagctgggagaacgcataatcgggccaattagggattttagatcatgacattgttctagtgttgtctaataagtggccat  19250500                                             ----------->GT1                                             <---------MYB46(3)                                             <------MYB46(1)                                             <------MYB83                                            <---------AtMYB61                                            --------->ALFIN1                                            <---------DEAR3(1)                                           <---------------------WRI1                                          <---------ANAC58                               <---------ANAC46                                          <---------ANAC58                               <---------ANAC58                                          <---------ANAC46                               <---------ANAC58                                    <---------GLK1(2)                           --------------->AGL15                                 --------->HSFB2a(2)                           <-----------------AGL3                         <-----------GT1 <---------MYB46(3)                    --------->TOE2(3)                --------->ARR11(3)  <---------ARR11(3)                         --------->YAB1                <---------ARR14(2)  <---------ARR14(2)                      <----------DOF2    ------                --------->ARR14(2)  --------->ARR11(3)                     <---------ANAC58  <-------                <---------ARR11(3)  --------->ARR14(2)                     <---------ANAC58  --------         <---------WRKY38(1)     <---------HSFB2a(2)            <---------TOE1(3)  <---------YAB1    <XXXXXXXXXXXXXXXXXXXXMIR172A/B--------->LBD16 <---------ARR14(2)<-------TEIL<---------------AGL15   ttgatgcagagtcaacaagatactattacaccgttccagattttgggtggtgaatcccaagttgttcaggtacatttgctttcttaatatagcgtgatct  19250600  Previous    Next  AGI:  At5g47410.1    Description:  similar to hypothetical protein 25.t00068 [Brassica oleracea] (GB:ABD64961.1) Range:  from: 19249442    to: 19249813    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g47420.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G17420.1); similar to hypothetical protein 31.t00054 [Brassica oleracea] (GB:ABD65092.1); contains InterPro domain Protein of unknown function DUF124 (InterPro:IPR002838); contains InterPro domain Tryptophan RNA-binding attenuator protein-like (InterPro:IPR016031) Range:  from: 19250063    to: 19252286    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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