Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        --------->ATHB12                     --------->ICU4         <---------TOE2(3) -------->GT1        <---------YAB1 ->AHL20(2)          <---------ATHB12                        <-----------GT1 --AHL20(2)<------ZmHOX2a(1) --------->YAB1            <-------TEIL                     ----------->GT1 ------AGL15    --------->YAB1                  --------->YAB1       <-----------GT1---------->DOF2<-   tagaaaaatataaggaaattgtaatgatttagcataagacaattggataatcacaaatgcattaaacctattaactagtctatatagaaagagttattag  19243600                            --------->ARR11(3)                            <---------AHL20(1)                            <---------AHL20(2)            <---------ICU4                            --------->AHL20(1)           --------->ICU4                         --------->AHL20(2)            --------->YAB1               <---------AtMYB61                --------->CCA1(2)             <-----------RAV1(1)               --------->ARR11(3)                            <-------         <---------------AGL15               <---------TOE2(3)                        ----------->GT1         --------------->AGL15        <---------------AGL15  --------->TOE2(3)      <---------At4g35610        <-----------------AGL3  ----------->GT1<---------ARR11(3)      <---------GLK1(1)<---------MYB52(1)        ==============================================MADS_MADS   ---------->DOF2  ------------>MYB.PH3(1) --------At5g28300  <------NtERF2     --------------->AGL15 ----------->GT1      ---------->DOF2   ttacagctatactatttgtggtggcattaatatatagtaacttatttaagatatatgtcataatgttaaaaagaaatcacagagaaagctgttatttttt  19243700                                                                                          --------->YAB1                                                                                      --------->AHL20(2)                                                                                      <---------AHL20(2)                                                                                     <---------YAB1                                                                                   <--------HAHB4                                                                                   <---------ICU4                                                                                   -------->HAHB4                                                                                   <--------ATHB1                                                                                   --------->ATHB51                                                                                   --------->YAB1                                                                                  <---------ATHB51                                                                                  --------->AHL20(2)                                                                                  <---------YAB1                                                                                  --------->ICU4         --------->AHL20(2)                              --------->AHL20(2)     --------->YAB1    ------>ZmHOX2a(1)               ----------->GT1      <---------AHL20(1)    --------->AHL20(2)----   --------->TOE2(3)       <---------TOE2(3)             <---------AHL20(2)   --------->ICU4     <--- --AHL20(2)          --------->ARR11(3)        <----------DOF2        <---------ICU4 --------->ICU4   ttaatcctaaatttaaaactttggatattgagattagcctgtaatacatctttttccaaaaaatttatacaaaaatggccattaataattaatagtaata  19243800                                                         --------->YAB1                                                         -------->HAHB4                                                      --------->YAB1                                                     <---------------AGL15                                                     --------------->AGL15                                                    <-----------------AGL3                                                    ----------------->AGL3                                               --------->ARR11(3)                                               <---------ARR11(3)                                             <---------AHL20(2)    ------->MYC3 ----->STY1(2)                              --------->AHL20(2)     <-------MYC3 ------STY1(2)    ---------->DOF2         --------->YAB1<---------YAB1   <---------WOX13(1)   gctagttggacttcttagttcaaagtaattcaacattttttctaaaataaatcttctaataatagaacacgttggattgactaattaagtcaaatatgaa  19243900                                     <---------ICU4                                     --------->AHL20(2)                                    --------->AHL20(2)        --------->AHL20(2)                                    <---------ATHB12      --------->AHL20(2)                                    <---------AHL20(2)    ----------->TBP                                  ------>MYB46(1)         <---------AHL20(2)                                  ------>MYB83          ----------->TBP                               --------->ANAC46       <---------AHL20(2)                       ------>MYB46(1)                --------->AHL20(2)       ----------->GT1 ------>MYB83 <---------ATHB51  ----------->TBP       <----------ID1 --------->MYB52(1)            ----------->TBP                                 -      ----------->GT1--------->DEAR3(1)           --------->AHL20(2)                         --------     --------->DAG2  --------->AtMYB61          --------->AHL20(2)             ---------->DOF2     --    ---------->DOF2 --------->MYB46(3)          <-----------TBP   --------->YAB1          --------->MYB52(1)   atatggaaaaggaaaaaaatccaccaacgatacaccaaataatttccgatttttatatatataaataaacatactaagagcaaaagaaaaacaaactgaa  19244000                 --------->AHL20(2)                --------->AHL20(2)             --------->AHL20(2)    ----------->GT1            --------->AHL20(2)  ------>NtERF2            <---------AHL20(2) --------->LBD16         --------->AHL20(2)  <---------LBD16        <---------AHL20(2) --------->GLK1(2)                  <---------ETT(1)    --------->AHL20(2)     <---------ARR14(2)            <---------AHL20(2) -------->AHL20(2)         --------->ARR14(2)            <---------ICU4                 <----------DOF2 --->GT1--------->AHL20(2)--------->RVE1(1)        --------->ANAC55(2)          <---------AHL20(2) ------->AHL20(2)*TSS   --------->AHL20(2)        <---------TOE2(3)             <---------YAB1  <----   aataaaaaaaataaataaataaaaaaaaaaatccggccagataaatcgaatttatgtaataaatccgaccagataaactgatattattgtctttcttccg  19244100                                                                   ------>ZmHOX2a(2)                                                                  <------ZmHOX2a(2)                                                                 <---------ARR14(2)                                                                 --------->ARR14(2)                                                              ------>ZmHOX2a(2)                                                             <------ZmHOX2a(2)                                                             --------->ARR14(1)                ------                                                             --------->CCA1(2)                -------                                                            --------->ARR11(3)                -------                                                            <---------ARR14(2)                <------ZmHOX2a(2)                                                            <---------ARR11(3)               <-------                                                            --------->AGP1                   --------                               <---------GLK1(2)            --------->ARR14(2)               --------     ---------->ID1          ----------->ARR10            ----------->ARR10                 --------- <----------DOF2            --------->YAB1  <---------At4g35610----------->ARR10           ---------- -----At4g35610  <----------DOF2--------->GLK1(2)  <------ZmHOX2a(2) --------->LBD16     <------ZmHOX2a(2)   ctcctttgtctctctatctctttctcacaattagattctgtgcttcttctgcgatcaactaagatccgatccgcgagcgtttcagacttcgatcagatcc  19244200                                                                                                -----                                                                                                <----                                                                                           --------->ALFIN1       --------->ANAC58                                                                  <---------ANAC46 >ZmHOX2a(2)                                                                             <---------ANAC58 -->CCA1(2)          <---------ANAC46                                                    <---------ANAC58 -->ARR14(1)       <---------ANAC46                                                     <------NtERF2 --ARR14(2)      <-----------HVH21                 --------->YAB1                       ------>NtERF2 ->AGP1--------->ANAC58  ----------->HVH21        <---------ATHB12                    <---------DEAR3(1) ->ARR14(2) --------->GLK1(2)                   --------->WOX13(1)                   <---------LBD16 >At4g35610 --------->ARR14(2)                <---------ZAT14                ---------->ID1---------- ->ARR10    <---------ARR14(2)                --------->ZAT14 <---------ALFIN1     <---------ATHB12<-   gattaagagaagcaaatcgggtcgggtatgactcgtcgatgttctcactgcaatcacaatggccacaactctcggacttgtcccaatcgcggcgtgaagc  19244300                                 ---------->DOF2                            <---------LBD16                            ------>ZmHOX2a(2)                           <------ZmHOX2a(2)                                               <---------ARR14(2)                          <---------ARR14(2)                                               --------->ARR14(2)                        ----------->ARR10                                             <---------AtLEC2                       <-------TEIL                                            <---------MYB46(3)                    <---------HSFB2a(1)                                       ------>ZmHOX2a(2)                    <---------HSFC1(2)                                      --------->ARR14(2)            ----------->HVH21 --------->LBD16                               <---------ARR14(2)          <---------At4g35610<---------HSFB2a(2)                         --------->HSFB2a(2)   ------          --------->At4g35610--------->HSFB2a(2)     --------->YAB1      <---------HSFB2a(2) <------- ---->ARR11(3)      --------->HSFB2a(1)              --------->TOE1(3)<---------ARR14(2)--------->ANAC58 -----ARR11(3)      --------->HSFC1(2) ----------------->AGL1    <---------LBD16  --------->ALFIN1 ->HVH21<---------DEAR3(1)--------->ARR14(2)  ----------->GT1  <---------REM1(2)<---------ANAC46 <--- ---------DOF2  --------->DEAR3(1)--------->DAG2     --------->TOE2(3)--------->ARR14(2)--------->ANAC58   tctttggtgttcggctcaccgaaggttcgatccggaaaagtgcaagtatgggtaatcttagccattacacgggttctggatcgggtgggcatggaaccgg  19244400                                                                            ------>NtERF2                                                                          <---------ANAC46                                                                          <---------ANAC58                                                                          <---------ANAC58                                                                         <---------ZAT2                                                                         --------->ZAT2           --------->ARR14(2)                                         <-------GAMYB         --------->LBD16                           --------->ARR14(2)<---------ANAC58       <---------LBD16                   <---------ANAC46         <---------GLK1(1)   <---------ALFIN1     <---------bZIP60(1)       <-------GAMYB   --------->GLK1(1)   --------->ZAT6 --------->LBD16    <-----------HVH21           --------->ARR14(2) ----------->RAV1(1)   ----------------------->TaNAC69(2)        <---------ARR14(2)                -- --->LBD16 <---------GLK1(2)  ----------->HVH21  <---------MYB46(3)  <---------ANAC58       ------>NtERF2 --LBD16<---------ANAC46--------->bZIP60(1)     <---------YAB1  <------ZmHOX2a(1)           --------- ------TCP16(1) <---------LBD16     <-----------RAV1(1)       <---------TOE2(3)      ------>ZmHOX2a(1)   gtccaacactccgggttctccgggtgatgtccctgaccatgtcgctggtgatggttacgcttctgaggatttcgttgctggctcttcctctagccgcgag  19244500  Previous    Next  AGI:  At5g47390.1    Description:  myb family transcription factor. similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT3G16350.1); similar to myb family transcription factor [Brassica oleracea] (GB:ABD65013.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447) Range:  from: 19244017    to: 19246085    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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