Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        --------->ZAT2                      --------->At4g35610              --------->AHL20(2)              <---------AHL20(2)              <---------AHL20(1)                                                   --------->ANAC58              --------->AHL20(1)                                                   --------->O2   <--        <---------TOE2(3)                                                          --------->ANAC55(2)     <---------WOX13(1)       ----------->GT1                                      --------->ANAC46   --------->ATHB12   <---------At4g35610                             ----------------------->TaNAC69(2)  --------->ICU4      <---------ZAT2 <---------YAB1     ----------->GT1            --------->ANAC55(1)  <---------YAB1     <-----------RAV1(1)             <-----------RAV1(1)           --------->ANAC58 ---->DOF2   --------->AHL20(2)      <---------AHL20(2) <---------ANAC46          <---------TOE1(3) -   agttatgattgacgaataaatttctgctggagttgaaatattattctatgtgactatgttgtatattcaagtcgtctacatgttcacgttacattgactt  19183700                                                                <---------ARR11(3)                                                                --------->AHL20(1)                                                            --------->YAB1                           <---------MYB52(1)            --------->YAB1                      <---------AHL20(2)                 <---------ICU4                            <-               --------->ANAC58                         --------->ICU4                           ----             ---------->DOF2 --------->MYB52(2)       --------->YAB1                             ----     --------->ANAC58--------->AHL20(2)             <---------ARR11(3)           <----------DOF2 <---     --------->ANAC58--------->YAB1               ----------->GT1  <-----------GT1             <----- -------ALFIN1 --------->ANAC58                 ---------->DOF2 <---------AHL20(1)             <----- -------->ANAC46    <---------YAB1   --------->YAB1 --------->ARR11(3)       <----------DOF2   ------   acaccgcaagcgatgaaaagctattatatgttagtttaatcagaataccaaaaagataataatcaaaatattccatcttctttctttgtgaaacgaatat  19183800                                                                                  --------->ANAC58                                                                                  --------->ANAC46                                                                                  --------->ANAC55(2)                                                                                  --------->ANAC58                                                                         --------->ATHB12<---------AHL20(2)                                                                        --------->AHL20(2)                                                                        <---------AHL20(2)        <-----------RAV1(2)             --------->ANAC55(1)           <---------------AGL15 --------GLK1(2)       ---------->DOF2  <---------ANAC55(2)           --------->TOE2(3)  --------->AHL20(2) ----->AHL20(1)      --------->AHL20(2) --------->ANAC58              --------------->AGL15 ----->ARR11(3)      <---------AHL20(2) --------->ANAC46             <-----------------AGL3<--------- ------ARR11(3)  --------->AHL20(2)     --------->ANAC55(2)     ----------->GT1   <---------ANAC55(2) ----AHL20(1)    <---------AHL20(2)     ----------->GT1        --------->DAG2  --------->ARR14(2) ----ARR11(3)----------->GT1            --------->ANAC58      ---------->DOF2  <---------ARR14(2)  -- --->ARR11(3)<---------MYB46(3)  ----------->RAV1(1)  <-------TEIL  <-------TEIL--------->CCA1(2) ---   atattctcttacaggtggtttaattaaaagcttgacaacagtacgtaatattagcatacatataaaaagttacattaattggatacgaaattttaatctc  19183900                                                                                                -----                                                                                                -----                                                                                         ---------->ID1                                                                                    =================     ----------->GT1                                                                <----------DOF2 <   <---------ARR11(3)                                                              ------------------   --------->ARR11(3)                    <----------ID1        ----------->GT1  <---------GLK1(2)  -- --GT1                                ---------->DOF2         >>>>>>>>>TBF1  <---------WOX13(1) ----- -------->DOF2                   ---------->DOF2       ---------->DOF2     --------->ATHB12   <------ --->ZmHOX2a(1)              --------->YAB1        <----------ID1        <---------WOX13(1) ------>ZmHOX2a(1)   ctaaagatagttattctccgattgtatagaatcaaaaaagaaaagaacaaaaatcgacaaagaagaagaaaaaagattgattgattcttttgtcctccac  19184000                           --------->At4g35610                           <---------At4g35610                         <-----------bZIP910(2)                        --------->TGA2(2)                       <-----------TGA1                       <-----------HVH21                      --------->ANAC46                      --------->bZIP60(2)                      --------->O2                      <---------bZIP60(1)                      --------->bZIP60(1)                      <---------TGA1a                                           <---------DAG2                      <---------O2                                              <----------DOF2                      --------->TGA1a                                      --------->TCP15(1) ---->ANAC58          --------->ANAC58                                     <---------PCF2 ---->ANAC46          --------->ANAC58                                     --------->TCP20        <-- ===============================bZIP_DOF                                  <---------TCP15(2)     <--- ---------CCA1(2)     <<<<<<<<<<AtbZIP1                 <---------AHL20(2)<------MYB46(1)     ------- ----->TaNAC69(2)    <-----------bZIP910(1)       --------->ANAC58       <---------MYB46(3) <-------- ----->TEIL         <---------ALFIN1         --------->AtMYB61          --------->ALFIN1<----------DOF2 ---->ANAC58      ------>NtERF2      --------->TOE2(3)  --------->AHL20(2)<------MYB83---------->ID1 ---ALFIN1        <-----------HVH21 --------->YAB1--------->ANAC58---------->DOF2    <-----------GT1-   gcatctctctgagttggctcggccacgtcagcattcaaacatcaaaaccaaaacgcatttaaatgtcgaaaagagtgggtccctttttttcttttttctt  19184100                                                                   <---------TGA1a                 --                                                                   --------->O2                   ---                                                                   --------->TGA1a               <---                                      ----------->RAV1(1)          --------->ANAC58         ------>NtERF2                                   --------->ANAC58                --------->ANAC55(2)     --------->DEAR3(1)                                 ============================================bZIP_DOF     <------NtERF2      <------------CBF       --------->ANAC58                      --------->ANAC58       --------->SPL7   <-----------HVH21         *TSS---------->DOF2                   --------->ANAC46       --------->ATERF1(1) -------At5g28300            --------->ANAC46                      <---------O2          <---------ATERF1(1) --------GT1       --------->ZAT18 --------->ANAC58          --------->KAN4(1)           ------>NtERF2 -->TOE2(3)        <---------ZAT18 --------->ANAC46         <---------KAN4(2)           --------->DEAR3(1) ---GT1<---------WOX13(1)    <----------ID1            ======================bZIP_DOF   ----------->HVH21 ------>GAMYB ---------->DOF2--------->ANAC58          ---------->DOF2                 --------->DEAR3(2)   aaccgtgtcattgacaaaaagagcacttaataagccaaagccacatagaagaaaaaaaaaagaacattcacgtctctctcgtttttttggccgacgacga  19184200                                   <---------ARR14(2)                       <----------DOF2                 --------->HSFC1(2)--------->ARR14(2)                 --------->HSFB2a(1)                             --------->YAB1                 <---------HSFB2a(1)                        --------->LBD16             <---------ANAC46      <---------GLK1(2)        ------>ZmHOX2a(1)            <---------LBD16       <---------At4g35610   ------->TEIL --------->ANAC58           --------->MYB52(1)    ----------->ARR10      <---------ARR14(2)                       ---- ------->At4g35610 --------->GLK1(2)--------->GLK1(2)   --------->ARR14(2)                      <---- --->ZmHOX2a(2)<------NtERF2  <-----------HVH21      <---------YAB1  --------->ANAC58       <-------- ---ZmHOX2a(2)--------->LBD16--------->YAB1       --------->ICU4 ----------->GT1      <---------MYB52(1)   tcgctgaattgactgccggagattcctttaatcgtcagattctcgttgagggataatgaatcctgaatagtaagaaacttgtcttctcgttgtttcatgt  19184300                                                                                             <------MYB83                                                                                             <------MYB46(1)                                                                                         <-------GAMYB                                                                                        --------->MYB111(2)                                                                                        --------->MYB55(2)                                                                                        <---------MYB46(3)                                                                                        --------->MYB111(1)                                                                                      <---------ANAC58                                                                                     --------->MYB52(2)                                                                                     <------MYB83                                                                                     --------->MYB55(2)                                                                                     <------MYB46(1)                                                                                     <---------MYB46(3)                     <----------DOF2                                                <---------AtMYB61                   --------->LBD16                                               <-----------RAV1(1)                 ------>ZmHOX2a(2)                                             <----------DOF2                <------ZmHOX2a(2)                                             ------>ZmHOX2a(2)               --------->ARR14(2)                                           --------->ARR11(3)               <---------ARR14(2)                                           <---------ARR11(3)             ----------->ARR10              <------MYB83                    --------->ARR14(2)            <------ZmHOX2a(2)               <------MYB46(1)                 <---------ARR14(2)   ----           --------->ARR14(2)              --------->MYB46(2)               <---------AGP1<---------MYB52(1)       <---------LBD16     <---------AHL20(2)       <------MYB83           <---------CCA1(2)--------- --->TEIL  <---------ARR14(2)              <---------MYB46(3)          <----------DOF2<---------ANAC58 -----CCA1(2)------>ZmHOX2a(2) <---------AHL20(2)   <------MYB46(1)   <---------ANAC58<---------ANAC46 -ANAC46<---------ANAC46  <---------AHL20(2)----------->GT1           <---------ANAC58<-------GAMYB   atctattgtttcggatcgatccgcgttttttattttttgatgtgtttggtgatttggtttttgttcgattttgctttggatctttgttggttgttaggtt  19184400                                                                                                -----                                                                                                =====                                                                                 ------>ZmHOX2a(2) --                                                                               <---------AGP1   <----                                                                               <---------ARR11(3)  <-                                                                               --------->ARR11(3) <--                                                                               ------->TEIL    <-----                                                                               --------->ARR14(2) <--               ------>MYB83                                                    <---------ARR14(2)----               ------>MYB46(1)                                            <---------ANAC46     ------             <---------MYB46(2)                                           <---------AtLEC2    <------             --------->TOE2(3)   <---------RVE1(1)                   <---------ANAC58         -------             <---------MYB59  <---------TOE1(3)                      <---------ANAC58        --------           -------->P <---------ANAC58                             <-----------GT1        <----------           ------->TEIL       <---------TOE2(3)                  <---------GLK1(1)       --------->ANAC46 ------->GT1 <---------MYB111(1) <---------CCA1(1)              <---------GLK1(2)==================== >MYB59------->TEIL   <---------ANAC58     --------->YAB1 --------->ARR11(1)  <---------CCA1(2)------   tgtgaattgaatctacctaattttgctcgtttaaggtattttgtattagaattttgtatagatttggattttcgttccatggatcttatacaggtcagat  19184500  =======================HOX2a_HOX2a  <------ZmHOX2a(1)  ======================HOX2a_HOX2a  =================HOX2a_HOX2a ---->CCA1(2)     ------>ZmHOX2a(2) ========HOX2a_HOX2a ------->LBD16   --------->At4g35610 --ZmHOX2a(2)    <------ZmHOX2a(2) --------LBD16   --------->CCA1(2) -------TOE1(1) <---------ARR11(3) ----ARR14(2)   --------->ARR14(3) -------TOE2(1) --------->AGP1 -->ZmHOX2a(2)  <---------ARR14(2) --->AGP1       --------->ARR14(2) ---At4g35610   <---------ARR14(3) -->At4g35610   --------->ARR11(3) --->ARR10     <---------GLK1(1)      <---------REM1(1) -HVH21     ------>ZmHOX2a(2)      <-----------RAV1(1)               <-----------GT1 ========HOX2a_HOX2a           <---------ZAT14             ----------->HVH21    ------>ZmHOX2a(2) --->ARR14(2) ----------->ARR10--------->ZAT14           --------->ALFIN1 <----------DOF2    --------   ccgaggaaatttgatcgagatctgcaatttctgtttactgttgtagttgaaattcgcgagtgtgacacaattttccctttgatctcattagcatattgta  19184600  Previous    Next  AGI:  At5g47200.1    Description:  AtRABD2b/AtRab1A (Arabidopsis Rab GTPase homolog D2b); GTP binding. similar to RAB1C, GTP binding [Arabidopsis thaliana] (TAIR:AT4G17530.1); similar to GTP-binding protein, putative [Brassica oleracea] (GB:ABD65068.1); similar to GTP-binding protein, putative [Brassica oleracea] (GB:ABD64935.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain RNA polymerase sigma factor 54, interaction; (InterPro:IPR002078) Range:  from: 19184129    to: 19186253    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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