Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 <---------AHL20(2)                                                                               --------->AHL20(1)                                                                               --------->AHL20(2)                                                                          <---------YAB1                                                                        --------->YAB1                                                                        <---------ICU4                                                             <---------TOE2(3) <---------AHL20(1)                                                          <---------AHL20(2)<---------AHL20(2)     <-                                                     <---------YAB1     -------->ATHB1             --                                     <---------YAB1--------->YAB1      <---------AHL20(2) --------->ATHB12                                   --------->YAB1  <---------ICU4      --------->AHL20(2)<---------YAB1        --------->ARR11(3)        <---------YAB1   <--------ATHB1      --------->AHL20(1)--------->ICU4        <---------ARR11(3)     <---------TOE2(1)   --------->ATHB12    --------->ICU4  --------->YAB1       <---------CCA1(2)       <---------TOE1(1)  --------->ICU4       <---------YAB1 --------->ICU4   <-----------GT1            --------->SPL7      <---------ATHB12  <---------YAB1  --------->YAB1 <- ---------->GT1             <---------SPL7        <---------YAB1   --------->AHL20(2) <---------YAB1< ---------REM1(1)         <---------------AtSPL8--------->YAB1     <---------AHL20(2)<---------TOE2(3)   agttgtaacatatcttaagtagttttatatggtacgatgataatttgctacaatgattattttatggattaaaattattattttattgatgatgatttat  19139700                                                                    --------->ARR11(3)                                                                    <---------ARR11(3)                                                                   --------->YAB1                                                            <--------ATHB1                                                            --------->AHL20(2)                                                            <---------AHL20(2)          --------->DAG2                                    --------->ATHB51         ---------->DOF2                   <---------ARR14(2)     <---------YAB1 ------>ZmHOX2a(2)                         --------->ARR14(2)  <---------AHL20(2) --------ARR11(3)                          <---------ICU4   <---------ICU4 ------->ARR11(3)                  <---------ZAT18         <---------YAB1                         <-- --------AGP1 --------->ZAT18      --------->ZAT14         --------->ICU4     --------->AHL20(2) <--- ------ZmHOX2a(2)     --------->AHL20(2)--------->YAB1   --------->YAB1       <---------AHL20(2) <---   agatctcaaaataaagtgaacaaaaaaaatcaaactatgcactcatatttgcagaggcataataatttatgatcatctgttttaatacatttgccaattc  19139800                                    <---------ALFIN1                                   --------->ZAT2                                   <---------ZAT2                                   --------->At4g35610                                   <------NtERF2                                   <---------At4g35610            --------->ANAC58      --------->ANAC58            --------->ANAC58      --------->ANAC58                                       ------->TEIL     <---------ARR14(2)       --------->ANAC46                                          <---------GLK1(2)     --------->ARR14(2)       --------->ANAC58                                          <---------CCA1(2)     --------->MYB52(1)       --------->ANAC58                                       ================  <---------HSFB2a(2)    --------->ZAT14                                             ------>ZmHOX2a(1)  --------->HSFB2a(2)    <-------TEIL            --------->ARR14(2)               ---------->ID1 --------DOF2          <---------SPL7  <---------ALFIN1                    <---------ANAC46 ------ANAC58        --------->ANAC46----------->RAV1(1)                   <---------ANAC58 ------ANAC58 --------->YAB1--------->ANAC46<---------ATHB12               <---------ANAC58        <-   ctttccataactgcaagcacaacgcggtacacgagccagcaccacaatcagtttccgataaaaacttttgacatattgcgttttgtccttgaatctcatt  19139900                    --------->ICU4               ----------->GT1         ------>ZmHOX2a(1)        --------------->AGL15                                                <-----------GT1       ------>ZmHOX2a(2)                                                    <---------YAB1     --------->ARR11(3) <---------AHL20(2)        <---------AtLEC2       <---------AHL20(2)  <-------GAMYB =============HOX2a_HOX2a                   --------->MYB52(2)        <---------ARR11(3)    <-------- --------YAB1---------->DOF2          ---------->DOF2   ----------->GT1 --------->AHL20(2)  ---------   caccattgatcctgtaaaagtaatatttaaaacacaaacacaaagttagttttcatggtagtaaaactacatgattttataactgaattagagatggtta  19140000                                                                                         ------->GAMYB                                                                                        -------------                   <---------REM1(1)                                                  <-----------GT1                   <---------ANAC46                        <------------CBF           --------->MYB52(1)              <------ZmHOX2a(1)                           --------->ATHB12      --------->YAB1    <--              --------->YAB1                             <---------YAB1      <---------ICU4     -----            <---------TOE2(3)     --------->DAG2         --------->ICU4      --------->YAB1   -------    --------->TOE1(2)           ---------->DOF2        --------->YAB1       --------->ICU4    <------ -MYB46(3) --------->YAB1   ---------->DOF2           <---------YAB1       --------->AHL20(1)-------- -->GT1 --------->YAB1<---------ETT(2)  <---------ARR14(2)<---------ICU4  --------->YAB1-------------   aaaaaacctagaataaggatgatgtagacaaaaagaaaggtggatttagtcattgtatgataattggagtttacaaaaataatgagaataacggtactat  19140100                                                     <-----------TBP                                                 <---------AHL20(2)                                                 <-----------TBP                                                 --------->AHL20(2)                                               --------->AHL20(2)                                               <-----------TBP                                               <---------AHL20(2)                                             <-----------TBP                                             <---------AHL20(2)                                             --------->AHL20(2)                                           <---------AHL20(2)                                           <-----------TBP                                           --------->AHL20(2)                                         --------->AHL20(2)<---------AHL20(2)                                         <-----------TBP <-----------TBP                                         <---------AHL20(2)----------->TBP                                       --------->AHL20(2)--------->AHL20(2)                                       <---------AHL20(2)<---------AHL20(2)  --------->AHL20(2)                   <-----------TBP <-----------TBP -->AtSPL3                           --------->AHL20(2)--------->AHL20(2)    <---------YAB1 -------AHL20(2)                     <---------AHL20(2)<---------AHL20(2)  --------->YAB1 ------>TBP                          <-----------TBP <---------AHL20(2)   <---------YAB1 -------->AGL15                    <-----------TBP   --------->AHL20(2)  <-----------GT1          <-- ---------AGL15                  --------->CCA1(2) <-----------TBP <---------CCA1(2)          <------ --------->AGL3                 --------->ARR11(3) --------->AHL20(2)   --------->YAB1    ---------->ID1 -->AtSPL8      ---------->DOF2 <---------ARR11(3) <---------AHL20(2)  <---------AHL20(2)<-----------GT1   ataatgaaatatcacatagaaagacacacacacagatatatatatatatatatatatatatatatatgcatatattatcatttttgatttttttctcttt  19140200                                                   <---------YAB1                                               <---------AHL20(2)                                             <---------AHL20(2)        <<<<<<<<<MYB98                      --------->AHL20(1) -------ANAC46  --------->AHL20(2)          <---------AHL20(1)                       <-------TEIL ----DOF2       <---------AHL20(2)    >>>>>>>>>MYB98      <-----------GT1    >>>>>>>>>MYB98       ---   gtgtatatatgttactaaaaaaatatggatagtttttagtaacatatatatttttgatagtatccatatgttttttagtaacatatatacataagtggaa  19140300                                                                                                   --                                                                                                  ---                                                            <--------ATHB1                        <--                                                            --------->ATHB51                    <----                                                            <---------ICU4                      -----                                             --------->ANAC46                                   -----                   --------------->AtSPL8    --------->ANAC58                                  ------                   <---------------AtSPL8    --------->ANAC58                     ----------->RAV1(1)                <------ZmHOX2a(1)      <---------WOX13(1)  <---------ATHB51 ------->GAMYB      <-----              <---------TOE2(3)      --------->ATHB12      <---------ATHB12 --------->TOE2(3) <------           --------->CCA1(2)      <------------CBF   <------MYB46(1)       --------->MYB46(3)--------          --------->ARR11(3)    <---------YAB1 ---------->DOF2        <-------GAMYB        <---------YAB1      ---------->DOF2          --------->AHL20(2)    ----------->GT1 <---------MYB46(3)    <---------AHL20(2)  <---------ANAC55(2)          <---------AHL20(2)    <------MYB83 <---------At4g35610     --------->YAB1 ------>YAB1---------->DOF2   --------->AHL20(2)    --------->MYB59  ----------->GT1      --------->TOE2(3)   tgatacttaaaagataaaggataagtacaaaattaaaattgattaatacgaaagtaggtcaataattcagatggttaaccacaacaacataatattaatg  19140400      --------->DAG2     ---------->DOF2  --------->YAB1 <---------YAB1 ------->YAB1 ------>ICU4 -------YAB1 -----ICU4 --->HAHB4                                                                               ------>NtERF2 ---->YAB1                                                  <---------AHL20(2)          ------>NtERF2 --->ICU4                        <---------AHL20(2)         --------->AHL20(2)          --------->LBD16 ----ATHB12               ----------->GT1               --------->AHL20(2)             <---------RAP2.6(2) ---TOE2(3)            <---------YAB1       --------->AHL20(2)                        <---------LBD16 ->YAB1              --------->YAB1 <---------YAB1   <----------DOF2 <----------DOF2<-----------GT1   atgatgataaagttgaatatggatgatgatgtaaatttatgaaaaaaaaaataaacttttatatatatagactttggtttaaaaattttccggcctattg  19140500                                                   <---------ARR11(3)                                                  <---------CCA1(2)                                               <---------AHL20(1)                                         ----------->GT1                     <---------AHL20(2) <---------TOE2(3)                     --------->AHL20(2)---------->DOF2                  --------->WOX13(1)  <---------AHL20(2)                      <----------DOF2            ---------->DOF2         --------->CCA1(2)                       ---------->ID1         <---------MYB59           <---------ARR11(3)            <---------At4g35610         --------->TOE2(3)         --------->ARR11(3)<---------MYB59       <-----------GT1    <------        <---------ANAC55(2)    ---------->DOF2 --------->AHL20(1)--------->At4g35610    <-----------GT1   aatatcaaatacctaaaagtcaattaaacgaataaaagatttaaagtaatatatatctaactaattcttctgaattttttctttttgaataaacaatttc  19140600  Previous    Next  AGI:  At5g47075.1    Description:  LCR20 (Low-molecular-weight cysteine-rich 20). Identical to Putative low-molecular-weight cysteine-rich protein LCR20 precursor (LCR20) [Arabidopsis Thaliana] (GB:P82734); similar to LCR6 (Low-molecular-weight cysteine-rich 6) [Arabidopsis thaliana] (TAIR:AT5G47077.1); contains InterPro domain S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851) Range:  from: 19139730    to: 19140053    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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