Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <-----------GT1          <---------ANAC55(2)          <---------ANAC46          --------->ANAC58          --------->ANAC58          --------->ANAC55(2)                           ---------->DOF2                        <----- ---------ARR11(3)                                      <---------DOF5.7(2)            ------>MYB46(1) -------->AHL20(1)       <---------AHL20(2)           --------->DOF5.7(2)              ------>MYB83 ---------AHL20(1)       --------->AHL20(2)          --------->TOE1(3)            <-----------GT1 -------->AHL20(2)  <---------AHL20(1)               --------->TOE2(3)<---------AHL20(2)      -------   aaaatattagttacgcatataacatatttatattcaatagaactataagtattttcgttaaagcttcaaaaatttatagagaaattacctagcaaatttt  19123200                            --------->AHL20(2)                            <---------AHL20(2)                          --------->AHL20(2)                          <---------AHL20(2)                        <---------AHL20(2)                        --------->AHL20(2)                      --------->AHL20(2)                    --------->AHL20(2)<---------RVE1(1)                                      <-------                   <---------AHL20(1) <---------CCA1(1)                                     <--------           <---------AHL20(2)         --------->GLK1(1)       <------MYB83           <-----------GT1           --------->AHL20(2)        <---------ARR14(2)       <------MYB46(1)   <---------AHL20(2)   <---------ANAC55(2)<---------AHL20(2)   <-----------GT1   <---------TOE2(3) <---------AHL20(1)   <---------ANAC46--------->AHL20(1)--------->ARR14(2)      --------->MYB59   <---------AHL20(2) ----AHL20(2)  <---------AHL20(2)  ----------->GT1      <---------AHL20(2)     --------->AHL20(2) -->AHL20(2)  --------->AHL20(2) <---------LBD16   --------->ARR11(3)          --------->AHL20(1)   atattacttatatttatataatatatatatatatatacggatatttttctattgatattgaattaggttttcactgaaaaataaaattttctattttcca  19123300                                                                   --------------->AGL15                                                                   <---------------AGL15                                                                 <---------YAB1                                                           ------>ZmHOX2a(1)                                    --------->CCA1(2)     --------->TOE2(3)                            --------->AHL20(2)          ------>MYB46(1)                       <---------AHL20(2)               ------>MYB83      ----------->GT1 --------->ANAC58 ----GT1               --------->AHL20(2)             <---------MYB59--------->AHL20(2)   --------->ANAC46 ---GT1            --------->AHL20(2)<-------TEIL  <-----------GT1--------->YAB1          --------->ANAC58   actcaaacacatatatagcatatatataaattgaatagatacattgcaactagttaccttcctcattttcataaattagtaaaacaaaatacaagaaact  19123400                                                                              <---------AHL20(2)                                                                           --------->AHL20(2)             <---------ICU4       --------->ANAC58                ----------->GT1            <---------ATHB12      --------->ANAC58               --------->DAG2       <---------TOE2(3)        --------->MYB52(1)   --------->AHL20(2)   --------->AHL20(2)    <---------WOX13(1)<---------CCA1(2)             --------->AHL20(2)    <---------AHL20(2) <---------YAB1     --------->ANAC55(2)   <-------TEIL         ---------->DOF2--------->AHL20(2) <---------TOE2(3)  --------->ANAC46     <-----------GT1---------->DOF2 --------->YAB1   gctaagattgacgaatcaatacgcgtatcaaaaaaaacgaaatatacgtttccattaaaaaagaagaaaggtaaaaataaataaatgtagatgcgattca  19123500                                   <---------YAB1                       <---------AHL20(2)                       --------->AHL20(2)                 <---------ANAC55(2) <---------ANAC58                 --------->ANAC55(2) <---------ANAC58                 ----------->GT1 --------->YAB1     <---------YAB1 *TSS          --------->TOE1(3)                --------->MYB59--------->GLK1(2)    <---------AHL20(2)---------->DOF2            <---------ZAT6 --------->YAB1      <-------TEIL        <---------YAB1--------->TOE2(3)       --------->YAB1 --------->ICU4<---------ICU4 --------->AHL20(2)<---------AHL20(2)   aatattcaaacatagagttatgtaataaatgagaatcatgcttactatgtgcatataatagagagacttattaaaagcccttcccttaaaaacttcccaa  19123600                                                                                         --------->ANAC58                                                                                         --------->ANAC58                                                                                  <---------ARR14(2)                                                          --------->YAB1          --------->ARR14(2)                                                         <---------YAB1           --------->GLK1(2)                                                       <---------ICU4            <---------GLK1(2)                                      <-----------GT1  --------->YAB1         --------->YAB1                                  <<<<<<<<<TBF1     --------->YAB1         --------->WOX13(1)                            <<<<<<<<<TBF1    <---------AHL20(2)        ----------->GT1 --------->LBD16            ------>ZmHOX2a(1)  <<<<<<<<<TBF1 --------->AHL20(2)       --------->DAG2  --------->LBD16      ------>ZmHOX2a(1) ------>ZmHOX2a(1)   --------->AHL20(2)       ---------->DOF2 <---------HSFB2a(2)   ttccattcctcttcctcttccttctccttcttcttcttcttcaccatttatttctcatcatcatacttataaaaagtaaatcagaatcccgaagcaaact  19123700                   <---------ICU4                    <---------ANAC58                --------->YAB1                       <---------ANAC46           <---------GLK1(2)                <---------ICU4                    <----------DOF2             ----------->ARR10               <---------YAB1                  <---------ARR11(3)       ---------->DOF2             --------->YAB1                <-------TEIL            --------->ICU4--------->GLK1(2) <-             <---------ICU4            <-------TEIL  <---------ANAC58 <---------YAB1               <-            <---------YAB1         <-------TEIL--------->ARR11(3)  <---------------AGL15           --          --------->YAB1   --------->ARR14(2)  <---------ARR11(1)  --------------->AGL15           --          <---------ICU4   <---------ARR14(2) <---------CCA1(2) <-----------GT1 --------->ARR14(2) --   ttcaatcttccatcatcatcatcatgtccgatacacatacatacatacatatctttcgtgtgatttatacttattaaagagagattctctcattaagaag  19123800                                         <-------GAMYB                                        <---------DEAR3(2)                                        <---------MYB46(3)            <----------DOF2            <---------ANAC58        <----------DOF2                <---------ANAC46                               ------->GAMYB --------HSFC1(2)                      <---------DEAR3(1)                            --------->MYB46(3) --------HSFB2a(1)                     <---------RAP2.6(2)                         --------->MYB52(1) ------->At4g35610                     <---------DREB2C(2)   ------>ZmHOX2a(1)    --------->MYB46(3) ------->HSFB2a(1)                     <---------ANAC58   ------>MYB83        ------>ZmHOX2a(1)     - ------->HSFC1(2)<----------DOF2  <---------AtLEC2        ------>MYB46(1)    --------->TOE2(3)     <-   aagcttccttctttcttttctttttcttctctctgttcatggcggttcaagctcatcaccatccttctactctcttcttcctcaacaacggacaagaagg  19123900                                          <---------MYB52(1)                                         <---------MYB52(1)         --------->LBD16                <---------DEAR3(2)        --------->RAP2.6(2)           <---------LBD16                                               -        ----------->RAV1(1)          ------->GAMYB                                                  -        --------->RAP2.3(2)         --------->DEAR3(1)                                      <--------      <---------At4g35610        <---------WRKY38(1)                                   <---------YAB1      --------->At4g35610       <---------ATHB12                                 ----------->GT1----- --------->YAB1                 --------->MYB46(3)                           --------->WOX13(1)------ -------->ICU4                --------->WOX13(1)                           <---------ATHB12 --------- --------KAN4(2)        <-------TEIL--------->ANAC46  <---------GLK1(2)  --------->GLK1(1)  <--------   gaatgatcagccgcataaatctcagtttcattcaatcaacgccggtttgttttctaaattctcgtttttgttgagaaatcaatcggtttattaatatcta  19124000                                                                                                    <                                                                                                    <                                                                                                    <                          <------NtERF2                                                          ----     <---------ARR14(2)   ----------->GT1                                           --------->ATHB12< --------->At5g28300     <---------MYB46(3)                                       <---------WOX13(1)< -------->LBD16          ----------->GT1                                        --------->ATHB12<---- ---------->GT1         <---------ANAC46                                        <---------MYB46(3) -- ---ARR10               <---------ANAC58           --------->ANAC58         <---------DEAR3(1)  <---- ---->MYB52(1)          <---------ANAC58           --------->ANAC58  --------->HSFC1(2)     <-------- ----->HVH21           <---------LBD16             --------->ANAC46  <---------HSFC1(2)    --------->ARR11(3) >ARR11(3)      <----------DOF2            <--------P---------->DOF2 --------->HSFB2a(1)   <---------ARR11(3) -ARR11(3)   <-----------GT1             <---------MYB46(3)          <---------HSFB2a(1)  <<<<<<<<<RAP2.2   accggtgaatcggtttatctttttgggcgggtaaaaaaaacaggggttgatacaagaaagcgagcgagagaagtttcttcggtgattgatttagatatca  19124100  Previous    Next  AGI:  At5g47050.1    Description:  ATP binding / protein binding / shikimate kinase/ zinc ion binding. similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G17680.1); similar to hypothetical protein 40.t00029 [Brassica oleracea] (GB:ABD65150.1); contains InterPro domain Shikimate kinase; (InterPro:IPR000623); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841); contains InterPro domain S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066) Range:  from: 19123567    to: 19125575    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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