Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     xx                                                                                                  <xx                                                                                                  xxx                                                                                                  xxx                                                                                                  xxx                                                                                                  <--                                                                                                 <---                                                                                                 xxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                              -------                                                                                              xxxxxxx                                                                                             --------                                                                                             <xxxxxxx                                                                                            xxxxxxxxx                                                                                           <---------ICU4                                                                                           --------->YAB1                                                                                           <xxxxxxxxx                                                                                           xxxxxxxxxx                                                                                          <---------YAB1                                                                                          --------->ICU4                                                                                        xxxxxxxxxxxxx                                                                                        --------->YAB1                                                                                        xxxxxxxxxxxxx                                                                                      xxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                               <---------MYB46(3)<xxx                                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                         --------->MYB52(1)<xxxxxxxxx                                                                         <---------ICU4--------->ICU4                                                                         --------->YAB1xxxxxxxxxxxxxx                                     --------->ALFIN1                   --------->ICU4xxxxxxxxxxxxxxx                                     <---------AtMYB61                  <---------ATHB51xxxxxxxxxxxxx                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                 --------->ZAT14                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                 <---------ZAT14                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             --------->ATHB12                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                            <---------YAB1                            xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         ----------->TGA1                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         ----------->HVH21                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ICU4     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <--------P    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        --------->YAB1 <---------MYB46(3)        <---------YAB1  <---------LBD16xxxxxxxxxxxxxxxxxxxxx       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)xxxxxxxxxxxxxxxxxx     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <---------AtMYB61xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)xxxxxx --------->At4g35610  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <---------------AGL15<xxxxxxxxxxxxxxxxxxx ------>HVH21         --------->ALFIN1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxxxx ---At4g35610      <-----------RAV1(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) -->At4g35610  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     ----------->HVH21xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   gacagcgtaatggtagtttctatggtggtgacgattgcagtggtgatggtgatgatggtatgacatttgtggaaataatggtggatgcgatgatgatgac  19019500             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)            <---------MYB46(3)        xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      --------->YAB1      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -----GAMYB<---------YAB1 ------MYB46(3) xxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(le3) ----->AtMYB77 xxxxxxxxxxxxxxx>smallRNA(si3) --->TGA1  --------->ICU4 xxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxsmallRNA(si3)                  <---------ANAC46 xxxxxxxxxxxx>smallRNA(se3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxx>smallRNA(i2)               <---------MYB46(3) xxxxxxxxx>smallRNA(fl3)             xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxx>smallRNA(se3)      ---------->DOF2     --------->CCA1(2) xxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------YAB1 xxxxxxxxxxxxxsmallRNA(le3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           <---------AHL20(2) xxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     <---------YAB1 xx>smallRNA(i2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        --------->AHL20(1)     --------->ARR11(3) xxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)        <---------ARR11(3)     <---------ARR11(3) xxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(le3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                --------->RVE1(1) xxsmallRNA(le3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <----------DOF2    --------->AHL20(2) x>smallRNA(le3) <---------YAB1    xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->YAB1    --------->CCA1(1)   ggttgcaagggtaatggttgtaatagcataaaaaagatggtgattgtgtagataagagtactttagtatatattatagtttatatacaaaatatcatctc  19019600                   --------->TOE2(3)              --------->MYB52(2)            <---------MYB52(1)            <--------P                                             <---------AHL20(2)           <-------GAMYB                                     ----------->RAV1(1)          <---------MYB46(3)                                 ------>NtERF2          <------MYB46(1)                                   --------->ANAC46          --------->MYB55(2)                                <---------ETT(1)          <------MYB83                                      --------->LBD16      <-----------RAV1(1)-------->HAHB4                    --------->HSFB2a(2)                      -      <---------MYB46(3) --------->YAB1                    <---------HSFB2a(2)                  <----   <-----------RAV1(1)  <---------YAB1<---------MYB52(1)<-----------GT1          ------------>CBF  --   tgtttttgttgttggttagtttcttaattatagtttttttgttagtcaattttgcaaatttcccgacatataatcgtgtttcattcaatccattttgttc  19019700                                                                                      <-------GAMYB                                                                                     ----------->GT1                                                                                     <---------MYB46(3)                                                           <---------ZAT6      ------->MYC3               --------->DOF5.7(2)                 <------MYB46(1)             ------->MYC2         -      ------------>CBF                             <---------ANAC55(2)         <-------MYC3         =  --------->ANAC58                                 <------MYB83                <-------MYC2      ----  --------->ANAC46                            ----------->HVH21      <---------At4g35610      <------  --------->ANAC58                       ----------->RAV1(2)         --------->At4g35610 --------->AHL20(2) ------>GAMYB  <---------MYB52(1)   ------>ZmHOX2a(1)----------->HVH21        ================MYC_MYB -----WRKY12  <-----------HVH21     <----------DOF2--------->ANAC55(2)        ======================= ------->MYB46(3)             --------->ALFIN1<---------YAB1   <-------TEIL   <---------TGA1a--------   aacgacgaaacaatcccgttacctagaaaaatgtggtccttttacctggtgataggtgatagtgatacatcagctatcgcacatgggtcgttaaaattca  19019800                                      <---------TGA1a                                      <---------O2                                      --------->TGA1a              --------->ZAT14                                 <---------ZAT18                   <---------ZAT14                         --------->ARR11(3)                    --------->ANAC46                         --------->AHL20(1)                 --------->ZAT18                         <---------ICU4                     <---------ZAT14                         - --------->DOF2          <---------ARR11(3)                 --------->ZAT14                         - ===============================================bZIP_DOF    <---------ZAT18                         < ----->AtLEC2            <---------AHL20(1)             --------------->AtSPL8                    --- -TEIL   ----------->RAV1(1)    --------->AtLEC2        <---------------AtSPL8                  ----- ==========bZIP_DOF----------->GT1    --------->O2   ---------->DOF2                           ------ ---------------->ANAC81--------->ICU4==========================bZIP_DOF                      <<<<<<<   tgaaaagaaaaccacagaaaaatgtaatattttcatgcactcgtgtgaaacaaaataaagagtacactctatactctatagtttctcgtttagtttagat  19019900                                              <---------WOX13(1)                                              <---------YAB1                                        -                                            --------->ATHB12                                        < ---------->TBP                            --------->ICU4                                       ----- -------->AHL20(2)                         <---------YAB1                                      <----- ---------AHL20(2)                       --------->YAB1                        --------->ARR11(3) <-- -------->TBP                           --------->ICU4                         <---------ARR11(3) <-- ---->CCA1(2)                      --------->LBD16                  --------->YAB1            ------- --->ARR11(3)                      ------>NtERF2     --------->TOE1(2)    ------>ZmHOX2a(2)   <------ <<RAP2.2                        <---------LBD16    --------->DEAR3(2)<---------YAB1  <---------WRKY18(1)   atataaatacaaagacttgagacgacttctaatactccggcaacgatgattaataccgacgataacttattgatgatcgaagctctcttgacctccgatc  19020000        <---------MYB52(1)      --------->AtMYB61      <---------ICU4    ------>NtERF2    ----------->RAV1(1)   --------->DEAR3(1)  --------->ATERF1(1)  <------NtERF2      --------->ARR14(2)                                                       <------ <---------ATERF1(1) <---------ARR11(1)                                                       ------- ------>NtERF2       <-----------ARR10                                                     <---------ARR14(2) -------->DEAR3(1)   --------->GLK1(2)                                          ------->PIF5  <------ ---------ETT(2)     ------->TEIL                                               <-------PIF5<-------- ->ZmHOX2a(2)        <---------ARR14(2)                                     --------->TOE1(2) ------- -ZmHOX2a(2)        <---------CCA1(2)                                      --------->DEAR3(2) ------- -------ATERF1(1)   <---------ARR14(1)                                    --------->PCF2   --------->ARR14(2) ---------HVH21 ------>NtERF2                --------->LBD16 <---------ANAC46  <---------TGA1a------- -->ARR14(2)    --------->LBD16             --------->HSFB2a(2)     <---------AtLEC2 <---------LBD16 ---ARR14(2)  <---------LBD16               <---------HSFB2a(2)--------->ALFIN1--------->TGA1a-------   cgtcgccaccattacttccggcgaatctcagcctcgagactactctcccgaagcgtttacatgctgtgttgaatggaacccacgagccctggagttacgc  19020100    <---------HSFC1(1)                                                                            <--    --------->HSFB2a(2)                                                                           <--    <---------HSFB2a(2)  <---------DAG2                                                           <--    --------->HSFC1(1)   <----------DOF2                        <<<<<<<<<<<<<<<<<LFY             <---   <---------LBD16<---------TOE1(1)                     <------NtERF2                      --------->O2 ---ANAC55(2)     <---------TOE2(1)                     --------->ATERF1(1)                <---------O2 -->ANAC58       --------->SPL7                        ------>NtERF2                       <---------TGA1a ---bZIP60(1)    <---------TOE1(2)                     <---------ATERF1(1)                 ========== ---GT1     <-----------HVH21                         ----------->HVH21                    --------->TGA1a -->ANAC55(2)    <---------TOE2(2)---------->DOF2     --------->ETT(2)              =================bZIP_DOF -->bZIP60(1)  <---------SPL7    ----------->HVH21    <---------DEAR3(1)            ---------->DOF2 - -->ANAC46--------->MYB46(3)   --------->LBD16       --------->ATERF1(1)  <------NtERF2  --------->CCA1(2) -->ANAC58--------->DEAR3(2) <---------LBD16     --------->ALFIN1 --------->ZAT6  <------ZmHOX2a(1)<-   cattttctggaaaccgtcgtacgatgacttttccggtgaagcagttctcaaatggggcgacggagtttacactggtggcaacgaggaaaagacacgaggg  19020200                                                                                                 <---                                                                                                 ----                                                                                              <------                                                                                              <------        <------ZmHOX2a(1)       --------->LBD16                                       <---------DEAR3(1)     <------ZmHOX2a(1)        <---------LBD16                                        <---------LBD16 ----MYB83                 --------->ATERF1(1)                                    <---------GLK1(1) ----MYB46(1)            <---------ANAC58                           --------->At4g35610------>NtERF2 -------MYB46(3)         <---------ANAC58                       <---------HSFB2a(2)------>ZmHOX2a(2) ------AtMYB61        <-----------RAV1(1)         <------NtERF2<---------LBD16    --------->GLK1(1) ======MYC_MYB     --------->GLK1(2)            <---------DEAR3(1)  <---------At4g35610--------->LBD16 -------->ALFIN1  <---------ARR14(2)   ---------->DOF2        <---------LBD16    <---------ARR11(3) ------GAMYB      <---------GLK1(2) <------ZmHOX2a(1)   ----------->GT1          --------->ARR11(3)<-   aggttgaggaggaagaagacgattctgtcgtctccggaggagaaagagcgtcggagtaatgttattcgggagcttaacttgatgatctccggcgaagcgt  19020300                 <-----------TGA1                 <-----------HVH21                --------->TGA1a   <---------ANAC58                --------->bZIP60(2)                <---------TGA1a   <---------ANAC46                --------->O2      <---------ANAC58     =======================================MYC_MYB        <---------ARR14(2)     =====================MYC_MYB --------->O2           <---------MYB46(3)     --------->ALFIN1     <-------GAMYB--------->TGA2(2)                     --------->ALFIN1      <---------ANAC58    --------->MYB55(2)            <---------TGA1a       <---------AtMYB61     --------->O2    <---------MYB46(3)            <---------bZIP60(2) <---------ANAC58        <---------O2   --------->ALFIN1             <---------TGA2(2)     <---------ANAC46        <---------bZIP60(2)   <---------AtMYB61     ----------->TGA1    <---------ANAC46                 <---------TGA1a       <  <---------MYB52(1)   --------->YAB1      --------->MYB52(1)                 <---------ANAC58     -- --------->LBD16<---------O2   ----------->TGA1  --------->GLK1(1)            <---------ANAC46     <- ------ARR14(2) --------->bZIP60(1)       ----------->HVH21--------->ARR14(2) ======================= ----->ARR14(2) <---------bZIP60(1) --------->ALFIN1  <---------ANAC58      <---------TGA2(2)     <-- ---ANAC58      <---------TGA2(1) <---------O2  <---------ARR14(2)         ----------->HVH21     <--- ---ANAC58      --------->TGA2(1)----------->STF1--------->CCA1(2)         ----------->TGA1      ---- --------LBD16 <-----------STF1----------->HVH21--------->ARR14(2)       <---------AtLEC2   ---------   ttccggtggttgaagacgacgtcagtgatgacgatgacgtggaagtgacggatatggagtggttcttcttggtttccatgacgtggagttttggtaacgg  19020400  Previous    Next  AGI:  At5g46830.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to ATMYC2 (JASMONATE INSENSITIVE 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G32640.1); similar to basic helix-loop-helix (bHLH) family transcription factor [Brassica oleracea] (GB:ABD65632.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 19019946    to: 19021481    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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