Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  --------->ATHB12                                    ------>ZmHOX2a(2)                                <---------AHL20(2)                                 <------ZmHOX2a(2)                 <---------------AGL15                                            ------->TEIL                 --------------->AGL15                                            <---------AGP1                <-----------------AGL3                                            --------->ARR14(2)                ----------------->AGL3                                            <---------ARR14(2)                ----------------->AGL2    <-----------GT1                         <-----------ARR10              <-----------GT1  --------->AHL20(2)                            --------->MYB52(1)      <-----------GT1          <---------AHL20(2)                        --------->YAB1   --------->ANAC46         --------->AHL20(2)    ---------->DOF2       <---------YAB1      <--------   actctaagtcactatatcaccataaatggattatttattagttttttctccataaaacaataagtggctatgtgataataaacggatctaagttatgttt  18991100                                                                                    <------MYB46(1)                                                       <---------ANAC58          <---------MYB52(1)                                           <---------AHL20(2)                 <---------TOE2(3)                                           --------->AHL20(2)            <---------ICU4                                    --------->YAB1     <---------ANAC58  -------->ATHB1                             --------->ANAC46    --------->ANAC55(2)     --------->YAB1                             --------->ANAC58   <---------TOE2(3)       <---------AHL20(2)                             --------->ANAC58  <-----------GT1          --------->ICU4                           --------->ZAT6 <---------AHL20(2)            --------->AHL20(2)                           <-----------GT1--------->AHL20(2)            <---------ATHB51                          <---------YAB1  --------->AHL20(1)          ------>MYB46(1)                         <-----------GT1  <---------AHL20(1)          ------>MYB83  <------MYB83                        --------->YAB1 --------->ATHB51--------->ANAC55(2) <---------YAB1       ----- -YAB1                  <---------ICU4 --------->AHL20(2)           <---------MYB59<---------AtMYB61   cagacaaaacagtgtccaaacgagaattatcactccatgaataatttatttacgttttcgtaacagttaaccaaattattatcgtttggtttttgtcata  18991200                                                    <------------CBF         <---------AHL20(2)                                                 ------------>CBF            --------->AHL20(2)                                            --------->AHL20(2)               --------->AHL20(1)                                            <---------AHL20(2)            --------->YAB1                                           <---------AHL20(2)           --------->AHL20(2)                                        <---------AHL20(2)             --------->YAB1                                        --------->ICU4     <---------HSFB2a(2)                                        --------->AHL20(2) --------->HSFB2a(2)  <-----------RAV1(1)              ----------->GT1<---------YAB1       --------->AHL20(2)          -- ---->AHL20(2)               --------->AHL20(2) <-----------GT1   ------------>CBF     <------------CBF   taatatgtcgcaactctcaacaaaaacttaagaaaataagaaaaaattatttacaattgttttagaaaaacaataaaaataaaatatagtattgtagaga  18991300                                                                            <---------At4g35610                                                                         --------->TGA2(2)                                                                         ----------->HVH21                                                                        <-----------TGA1                                                                        <-----------HVH21                                                                       --------->ANAC55(1)                                                                       <---------TGA1a                                                                       --------->bZIP60(2)                                                                       --------->ANAC58                                                                       --------->TGA1a                                                                       ==============================                                                                       --------->O2                                                                       <---------O2                                                                       --------->ANAC46                                                                       --------->ANAC58                                                                       --------->ANAC55(2)                         --------->ANAC58            <---------YAB1   <-----------STF1                         --------->ANAC46   ---------->ID1           <---------ALFIN1                         --------->ANAC58   <-----------GT1    ------>ZmHOX2a(1)             <---------ATHB12           =========================================bZIP_DOF             ------------>CBF           <----------DOF2    <-----------GT1  --------->At4g35610     -            --------->ANAC46            <---------DAG2    ----------------------->TaNAC69(2)   ------ --------->YAB1--------->WOX13(1) <---------ANAC58<----------DOF2   <---------REM1(2)          ------ ------->GLK1(2) <---------ATHB12 <---------ANAC58===============================bZIP_DOF    <-------   gaatcatcttctccaaacaatcactaaacgccatttgcttagctttttccctcttttgatttttcctccctacacgtcacctctctcttcttctcaccgg  18991400                                           <---------ANAC46                                         --------->LBD16                                        --------->DEAR3(1)                                        ------->GAMYB                   ----------->GT1     --------->DEAR3(2)                 --------->WOX13(1)             <-----------HVH21 <---------DAG2 <---------TOE1(2)         <---------YAB1            --- ==========bZIP_DOF--------->LBD16     --------->MYB46(3)  --------->ANAC58                       --- --------->DOF2  <---------LBD16<----------DOF2          --------->MYB52(1)                  ------>NtERF2 --->LBD16  <----------DOF2 <-----------GT1<---------ANAC58--------->ANAC58           <---------WRKY18(1) ----->GT1 <---------DAG2 --------->ARR11(3)<---------SPL7------->TEIL --------->TOE2(3)    --------- --LBD16<-----------GT1  --------->RVE1(1) <---------ANAC58--------->ANAC46 <---------ATHB12---------   aaaaaagtcttcacctttcaccggaaaatatcaccttttcaaccggcgtatgttcacatgaacggcacaacatcatcaatcaacttcttgacctccgacg  18991500             <---------MYB46(3)             <---------RAP2.3(1)             ------>NtERF2             <---------ERF1            <---------DEAR3(1)            <---------RAP2.6(2)            --------->ATERF1(2)            --------->DEAR3(1)            <---------ANAC46           --------->RAP2.3(1)           --------->DEAR4(2)           <---------At4g35610           <------NtERF2           --------->DREB2C(1)           <---------DREB2C(1)           --------->ATERF1(1)          <---------RAP2.3(1)          ------>NtERF2          <---------ORA47(2)          <---------RAP2.6(1)          <---------ERF1          <---------ATERF1(1)          <---------DEAR4(2)         --------->ATERF1(2)         <---------RAP2.6(2)         <---------ATERF1(2)         --------->DEAR3(1)         <---------DEAR3(1)         <---------RAP2.3(2)         <---------RAP2.3(3)         <---------RRTF1(3)        --------->At4g35610        <---------ABI4(1)        <---------At4g35610        <------NtERF2        --------->ATERF1(1)       <---------RAP2.3(1)       <---------DEAR3(2)       <---------ORA47(2)       <---------ERF1       ------>NtERF2       <---------ATERF1(1)       <---------RRTF1(1)      <---------At1g77200      <---------DEAR4(1)      <---------DREB2C(2)                                                     ------->GAMYB      <---------RAP2.3(3)                                                     <---------ALFIN1      <---------DEAR3(1)                                                     --------->MYB46(3)     --------->ATERF1(1)                                                     <---------MYB55(2)     <------NtERF2                                                          -------->P    <-----------HVH21                                                      ------->GAMYB   =================================bZIP_DOF                              <---------MYB55(2)   <---------TGA1a                      <---------MYB55(2)                --------->MYB46(3)   <---------O2                       --------->ANAC46               --------->AtMYB61   --------->TGA1a                  --------->MYB46(3)               <---------ALFIN1   --------->O2          <----------DOF2--------->MYB46(3)        <---------ALFIN1 <---------ANAC58      --------->HSFC1(2)                         --------->AtMYB61 <---------ANAC46      --------->HSFB2a(1)        <---------CCA1(2)----------->RAV1(1) <---------bZIP60(2)   <---------HSFC1(2)   <---------ALFIN1      --------->DEAR3(1) <---------ANAC58      <---------HSFB2a(1) --------->MYB46(3)    --------->MYB46(3)    --------->TOE2(3) -------->TGA1<------NtERF2         <---------MYB52(2)  <----------DOF2   <---------MYB111(2) <------ -------->HVH21<---------ARR14(2)<----------ID1<---------ATHB12<---------ALFIN1  --------->AtMYB61 -->HVH21<---------RRTF1(2)<---------YAB1--------->AtMYB61     --------->ANAC46 --------->bZIP60(2) >DEAR3(1)<---------RRTF1(1)--------->ATHB12--------->AtMYB61------>ZmHOX2a(1)--------->AtMYB61     -   atgacgcgtcggcggcggctatggaagctttcattggaacaaaccaccactcatctctctttcctccaccaccacaacaaccacctcagcctcagttcaa  18991600                                                                                    --------->ANAC58                                                                                    --------->ANAC46                                                                                    --------->ANAC58                                                                                  --------->ANAC46                                                                               ----------->HVH21                                                                              ------>ZmHOX2a(2)                                                                             --------->GLK1(1)                                                                             <------ZmHOX2a(2)                                                                            --------->ARR11(3)                                                                            <---------AGP1                                            <------NtERF2                   <---------ARR11(3)                                           --------->LBD16                  <---------ARR14(3)   --------->ARR14(1)                    <---------LBD16                   --------->At4g35610  <---------GLK1(2)                     --------->LBD16                    <---------At4g35610  --------->ARR11(3)                    ------>NtERF2                 --------->HSFB2a(2)  <---------ARR14(2)                   --------->ANAC46               <---------HSFB2a(2)<-----------  <---------ARR11(3)                <---------ARR14(2)      --------->ANAC58<-----------ARR10       -  --------->ARR14(2)                --------->ARR14(2)      --------->ANAC58<---------ARR14(2)     <- ---WRKY12                 <----------DOF2--------->DEAR3(1)--------->ANAC46--------->ARR14(2)    --- ---------->ARR10<-----------TGA1   --------->GLK1(2)    <---------SPL7    <---------CCA1(2)  <------   cgaagatactcttcaacaacgtctccaagctttaatagaatccgccggagaaaactggacttacgctatcttctggcagatctcacacgacttcgattca  18991700                                                                                             <------NtERF2                                    <---------MYB46(3)                                      ---------                                    ----------->GT1                                        <---------DEAR3(1)                           --------->ALFIN1                                                --------->ALFIN1                         <---------ZAT2                                                   <---------LBD16                         --------->ZAT2                                                 --------->ANAC46   --------->LBD16       ----------->RAV1(2)                                          <---------ALFIN1 <---------LBD16         --------->At4g35610                                         ------>MYB83 ----------WRI1          <---------At4g35610                         <xxxxxxxxxxxxxxxxsmallRNA(i) -------->MYB52(1)     <---------DEAR3(1)                            >>>>>>>>>TBF1   ------>MYB46(1) --------ALFIN1       <---------LBD16                     --------->ARR11(3)        ----------->RAV1(1) ------>MYB46(3)      ------>ZmHOX2a(1)      ---------->DOF2---------->DOF2        --------->AtMYB61 -TEIL              ------>ZmHOX2a(2)<-------GAMYB    <------ZmHOX2a(1) >>>>>>>>>TBF1-------->P   tccaccggagataacacagtgatcctcggctggggagatggttactacaaaggagaggaagataaagagaagaagaagaacaacaccaacacggcggagc  18991800                                                 --------->ARR14(2)                                   <---------MYB52(1)     <---------ARR14(2)                    <---------ANAC58             <---------ARR14(2)                    --------->ANAC55(2)        --------->LBD16                    <---------ANAC55(2)      <---------LBD16                    <---------ANAC55(1)    <---------DEAR3(1)      ------->TEIL           --------->ARR11(3)                    <---------ANAC58      <---------LBD16--------->GLK1(1)                <---------ARR14(2)             ----------->GT1     ----------->GT1<------NtERF2 --------->At4g35610         --------->ARR14(2)    --------->At4g35610  --------->At4g35610--------->LBD16   <---------At4g35610         <---------GLK1(2) >LBD16  ---------->DOF2 <---------At4g35610------>NtERF2<---------GLK1(1)           --------->MYB52(1)   aagagcatcggaaaagagtaatacgtgagcttaactcgttaatctccggcggaattggggtttccgatgaatcaaacgatgaagaagtaacagatactga  18991900                                                         --------->ARR11(3)                                                         --------->GLK1(2)                                                         <---------ARR11(3)                                                         --------->ARR14(2)                                                  <---------HSFB2a(2)                                           <------MYB46(1)               <---------ANAC58                                           <------MYB83  <-----------ARR10                       <---                                          <---------AtMYB61    --------->TOE2(3)   <------MYB46(1)                                         ==========================================MYC_MYB      <----                                  <---------DOF5.7(2)    <---------ARR14(2)        <------MYB83 <----                                  --------->MYB52(1)--------->LBD16      --------->TGA1a     --------                                --------->DOF5.7(2)--------->ANAC46      <---------O2        <-------                               --------->TOE2(3)  --------->LBD16        ============================                             <-------TEIL<--------P--------->LBD16       <---------ANAC46    <-------                          --------->HSFC1(2)      --------->HSFB2a(2)    --------->O2 <---------GLK1(1)                          <---------HSFC1(2)      <---------LBD16        <---------TGA1a   --------->LBD16                       ---------->DOF2 --------->ALFIN1 <---------GLK1(2)<---------ANAC58<---------LBD16   atggttcttcttagtttcgatgactcaaagcttcgttaacggtgttggtctccccggagaatctttcttaaactctcgtgtgatttggttatccgggtct  18992000  Previous    Next  AGI:  At5g46760.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT4G17880.1); similar to basic helix-loop-helix (bHLH) family transcription factor [Brassica oleracea] (GB:ABD65632.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 18991458    to: 18993236    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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