Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         --------->HSFB2a(2)          <---------GLK1(2)--------->GLK1(2)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <xxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                              xxxxxxxxxxxxxx    --------->YAB1     --------->HSFC1(1)                                           xxxxxxxxxxxxxxxxx   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                         xxxxxxxxxxxxxxxxxxxx   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                         <---------ANAC46   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                           --------->TOE2(3)xxxxxxxxxxxxxxxxxx ------GLK1(1)         <---------HSFC1(1)            <<<<<<<<<<MYB80      <---------YAB1 ------At4g35610    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ----->At4g35610<---------TOE2(3)                   ----------->GT1      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ----->GLK1(1)  <---------TOE2(2)    -------->P     <------MYB83<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -ZmHOX2a(1)    <---------TOE1(2)<-----------ARR10  <------MYB46(1)<---------MYB52(1)  <xxxxxxxxxxxxx -----------TaNAC69(2) <---------HSFB2a(2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<xxxxxxxxxxxx   gctccatcatcaaattcttaggtttctagaatccaaaactaccctctcttaagttggtttaatacaaacgttatttatgaattatgtgtatgatgcattg  18937300                                                                                     --------->AHL20(2)                                <---------AHL20(2)                                   <---------AHL20(2)                    --------->AHL20(1)                                           <---------YAB1                    <---------AHL20(1)                                          <---------AHL20(1)                  --------->AHL20(1)                                     --------->YAB1                  --------->ARR11(3)                                    --------->AHL20(2)  <--------                  <---------ARR11(3)                         <---------ICU4     --------->AHL20(1) <- xxxxxx>smallRNA(l2)--------->ARR11(3)                       <--------HAHB4     <---------AHL20(2) -- xxxxxx>smallRNA(i2)<---------ARR11(3)                       --------->YAB1 <---------ICU4--------->AHL20(2) >smallRNA(si3)--------->AHL20(2)---------->DOF2             --------->ATHB12  --------->AHL20(2)  -- xxxx>smallRNA(i2)<---------AHL20(1)     ----------->GT1     --------->ATHB51  --------->YAB1      -- xxxxxxxxxsmallRNA(i2)         <---------AHL20(2)           --------->ICU4 --------->ICU4 <---------AHL20(2) xxxxxxxxxxsmallRNA(fl3)       --------->AHL20(2)           --------->AHL20(2) <---------AHL20(2)  --   ttgagaatgttgttagaaaaaatatttttaaaattaaaaggaattgtttattgtataagtgaataattagataaataaaaattatatttaaattaaacaa  18937400                                 <---------ZAT2                                 --------->At4g35610                                 <---------At4g35610                               <-----------RAV1(2)                             <---------ANAC46                        <---------ANAC46                        <---------ANAC58                       ------>NtERF2                 <--------ATHB1                           -------                      ------>NtERF2                  -------->HAHB4                         ------>MYB83           --------->LBD16<------NtERF2              --------->ATHB51                       ------>MYB46(1)       --------->GLK1(2)<---------ANAC58             --------->ATHB12                       ---------       <---------ARR14(2) --------->ATERF1(1)        <---------ICU4                       <---------MYB111(1)      --------->RVE1(1)<------NtERF2                <---------ATHB51                      <---------MYB59 ---GT1--------->ARR14(2)<---------SPL7             <---------YAB1                       <---------ANAC55(2) ---------ID1         --------->LBD16               <---------AHL20(2)              --------->MYB52(2) --------->GT1       <---------DEAR3(1)             --------->ICU4                  <---------MYB46(3) ------->ANAC58     <---------LBD16               --------->YAB1             >>>>>>>>>EIN3<---------MYB46(2) ------->ANAC58     --------->LBD16           ----------->GT1      <---------ARR11(3)    --------->ANAC55(2) ------->ANAC46  <---------At5g28300          <---------ZAT6       --------->ARR11(3)  <-----------GT1   tacgaaaaaaatccgaaaataccgcggcgtagcgcaggtgatcacctagtgttaataattgaaaattaagaacttctatacattgtttgttacctaacca  18937500                                   --------->CCA1(2)                               <---------TOE2(3)                --------->ANAC58                            <---------REM1(1)           --------->ATHB51                            <---------YAB1              <---------ICU4                          --------->YAB1                --------->ATHB12                         --------->ICU4                --------->ICU4 --------->ANAC58                       --------->YAB1                  <---------YAB1 --------->ANAC58                       <---------ICU4                  <---------ATHB12       --------->GLK1(2) -->MYB46(3)       --------->AHL20(2)         --------->ZAT14   --------->ANAC58 >MYB52(1)         --------->YAB1<------ZmHOX2a(1)     <---------ATHB51      <---------GLK1(2)   ttcttcatatgtaaacaacaattaaaaatgatgaaggatataatgtactacaggcccataattgagacgcacaggcccagaatcgaataagaccggccca  18937600                                                                 *TSS                                                            --------->CCA1(1)                                     <---------YAB1     <---------AHL20(2)                              <---------------AGL15     --------->AHL20(2)<---------MYB46(3)                              --------------->AGL15 --------->AHL20(2)  <---------At4g35610         -                           <-----------GT1  ---------->DOF2 --------->RVE1(1)               <------NtERF2   <---------ICU4------------>CBF <---------AHL20(2)<---------AHL20(2)  <-------GAMYB     <---------DEAR3(1)   ttccaaaatgacgactgaattcaattttgtttctattttttgataaaaaagaaattaaaaaaatatcgcatttcagttgttcaacttcttcgtcgtcgtc  18937700                                                              ------>ZmHOX2a(2)                       ===================================HOX2a_HOX2a                       ------>ZmHOX2a(2)                    <---------ARR11(3)                      <------ZmHOX2a(2)                     --------->ARR14(2)                      ====================================HOX2a_HOX2a        <------ZmHOX2a(2)                     <---------ARR14(3)            ==================================HOX2a_HOX2a                     --------->ARR11(3)            =================================HOX2a_HOX2a                     <---------ARR11(3)            =================HOX2a_HOX2a          ------->TEIL                     --------->ARR14(2)          ----------->RAV1(2)        --------->ARR14(2)                     <---------ARR14(2)      --------->ARR14(2)             <---------ARR14(2)                <------NtERF2        <---------CCA1(2)      --------->ARR11(3)          <---------GLK1(2)              <---------DEAR3(1) --------->TOE1(3) ------>ZmHOX2a(1)   <-----------GT1  <---------CCA1(2)            <-----------HVH21    --------->TOE2(3) ==================HOX2a_HOX2a <---------ANAC58    <----------DOF2  --------->ARR14(3) --------->TOE2(3)   <---------ARR14(2)   <---------ANAC58 -------------------->WRI1     ------->TEIL <---------CCA1(2)<------ZmHOX2a(2)------>ZmHOX2a(2)  <---   ttcttcctttgctccgtcgtcgagatctcgtcgaacctcaaatctcaaatctcctgtaaccagatcgtctaattatccgatctgcgtttcgaatctcaga  18937800                                                                                    <---------MYB46(3)                                                                                 <-----------HVH21                                                                                =====================                                                                                --------->TGA1a                                                                                --------->O2                                                                                <---------TGA2(1)                                                                                --------->TGA2(1)                                                                                <---------TGA1a                                                                                <---------O2                                                                                --------->bZIP60(1)                                                                                <---------ANAC58                     ------>NtERF2                                              ================MYC_MYB                    --------->ANAC58                                            <---------bZIP60(2)                    --------->ANAC58                                            <---------bZIP60(1)                    --------->ANAC46                                            <---------ANAC58               <---------At4g35610                                             ----------->STF1             <---------RAP2.6(2)                                      ====================MYC_MYB            <---------At4g35610                                       ------>MYB46(1)            <------NtERF2                                             -------->P<---------ANAC46            --------->ATERF1(1)                                       --------->MYB52(1)           <---------ATERF1(1)                                       --------->MYB55(1)           ------>NtERF2                                            <---------MYB111(1)           --------->MYB55(2)                                       --------->MYB46(3)           --------->ABI4(2)                                        --------->AtMYB61           <---------MYB46(3)                                       <---------MYB52(2)          <---------DEAR3(1)                                        <---------MYB111(2)          --------->ALFIN1                    <------NtERF2         <---------MYB46(2)         <---------MYB52(1)                 --------->ALFIN1        --------->DEAR3(1)       <-------         --------->ATERF1(1)               --------->LBD16          <---------MYB55(2) <--------P       <---------DREB2C(2)               <---------LBD16   ---------->DOF2   ----------->TGA1--------       <---------ATERF1(2)            <---------GLK1(1)    ===============================bZIP_DOF       <---------DEAR3(1)            --------->ARR14(2) --------->YAB1------>MYB83 <---------ANAC46  --------->HSFB2a(1)--------->LBD16 ------->TEIL--------------->AtSPL8      ----------->HVH21<------ ---ZmHOX2a(2) --------->At4g35610  <---------GLK1(2)------->TEIL ------->TEIL<---------TGA2(2)   tcgaagatgccggtggctgcttccgccatctattttctgaatctccgtggcgatgtactcataaatcgcacctaccgagatgacgtcgggtaagagagct  18937900                            <---------AHL20(2)                            --------->AHL20(2)          <---------At5g28300  <----------DOF2       <---------AHL20(2)          <---------At4g35610 ============bZIP_DOF   --------->AHL20(2)          --------->At4g35610                           <-- --ARR11(3)           <----------DOF2               --------->ZAT2                              <---- ->ARR11(3) --------->DEAR3(1)                      <---------ZAT2  <---------YAB1         <--------- ---At4g35610      ------>ZmHOX2a(2)      <----------DOF2        ---------->ID1      --------------->AtSPL3   tctccttttcttcaccgtcgatctctttaattttttgaattcggcttcattttcagctccatgttttgttcttatcgcttctaagtagtcgtactttgta  18938000                                                                               --------->ANAC58                                                                               --------->ANAC58                                                                              --------->SPL7                                                                            <---------SPL7                                                                           <---------ANAC46                                                                           <---------ANAC58                                                                           <---------ANAC58                    --------->ARR11(3)                                    <---------------AtSPL3     --------->At4g35610                                                  --------------->AtSPL3     <---------At4g35610         --------->ATHB12                      ------->TEIL ----ZmHOX2a(1)     <---------ARR11(3)                               <-------TEIL             ------- -----TOE1(2)     <---------TOE2(3)        <---------YAB1         ----------------------->TaNAC69(2) -DOF2        --------->CCA1(2) <---------YAB1                   <---------MYB46(3)           -------   ggattttagctgtgagatttgagattttaaaattttgatttgattttgatacttaggggaaacatggtggatgcatttcgtacgcatataatgcagacga  18938100                                    --------->At4g35610                                   <---------ATERF1(1)                                  <---------RAP2.3(3)                                 <---------At4g35610                                 --------->ATERF1(1)                                <---------MYB46(3)                               <---------RAP2.6(2)                             <------MYB83                             <------MYB46(1)                            <---------AtMYB61                           <---------WOX13(1)                         --------->REM1(1)                       <-----------RAV1(2)                         --------->ETT(2)                     <-----------HVH21   <----------DOF2           <---------ETT(2)    --------->At4g35610    --------->MYB59 <---------ANAC58<---------ZAT2      --------->GLK1(2)     <---------YAB1        < -->ANAC58          <---------ANAC58<---------At4g35610 --------->ARR14(2) <---------YAB1          <- -->ANAC58      ------>ZmHOX2a(1)<------NtERF2          <---------ARR14(2)<-----------TGA1     ------   aagagttagggaattgtcctgtgcgtcagattggtggctgctcctttgtttatatgcgaatcagcaatgtctacatcgtcattgttgtcagtagcaatgc  18938200  Previous    Next  AGI:  At5g46630.1    Description:  clathrin adaptor complexes medium subunit family protein. similar to clathrin adaptor complexes medium subunit family protein [Arabidopsis thaliana] (TAIR:AT1G60780.1); similar to hypothetical protein OsI_008369 [Oryza sativa (indica cultivar-group)] (GB:EAY87136.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63440.1); similar to unknown [Populus trichocarpa] (GB:ABK94434.1); contains InterPro domain Longin-like; (InterPro:IPR011012); contains InterPro domain Clathrin adaptor, mu subunit, C-terminal; (InterPro:IPR008968); contains InterPro domain Clathrin coat associated protein AP-50; (InterPro:IPR015629); contains InterPro d Range:  from: 18937665    to: 18940777    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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