Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 --------------->AGL15                                    --------->DAG2                            <---------ANAC58                                   --------->DAG2                             <---------ANAC46                                  ---------->DOF2                         <-------MYC3                             ----------->GT1                              ------->MYC3                            --------->ALFIN1                             <---------O2                          <---------bZIP60(2)                            --------->O2                          <---------ANAC46                               ============================               --------->REM1(2)  =================================================bZIP_DOF      ---------->DOF2   --------->YAB1                                   --------->ALFIN1  <---------ZAT14      <---------ATHB12                                  <---------TGA1a     <-------  --------->ZAT14      --------->ICU4                      <---------GLK1(2)  <---------ANAC58   acagtgaagaaagagtgtgaagacaatgatgtggagaaaagggaagcagtgagagaatgtagattatctaatgacatgtggcttgttagagaaaactttt  18857100                                                                   <---------GLK1(2)                                                                  <---------At4g35610                                                                  --------->At4g35610                                                               <---------At4g35610                                                               --------->At4g35610           ------->TEIL                                     --------->At4g35610         <-------TEIL                                       <---------At4g35610                  ----        --------->AtLEC2                            --------->REM1(1)                        --------        --------->ANAC58        <---------DAG2    <---------HSFB2a(2)                       --------- ===bZIP_DOF         ---------->DOF2  <------------------------ANAC81               --------->ICU4 ---DOF2--------->ANAC58        <----------DOF2   --------->HSFB2a(2)  <----------DOF2 --------------   atctaatgacatgcatcttcaaacaaagttttctctttttgttttttgttttctacaacttcatctgcagatgctttgttgaagtaattcttgtaccata  18857200                              <---------At4g35610              --------->HSFC1(2)              <---------HSFC1(2)     --------->ATHB12<---------At4g35610    <---------YAB1<---------ANAC58         --------->ANAC58              --------->ARR11(3)  <-----------GT1 <---------ANAC58         --------->ANAC46              <---------ARR11(3)   <------ ----->AHL20(2) <-----------GT1 <----------DOF2                          <---------GLK1(2)    ------- ------->AGL15--------->HSFB2a(1)          --------->ANAC58       <---------YAB1<-------GAMYB ------- -------->AGL3<---------HSFB2a(1)--------->At5g28300           --------->ICU4  <-----------RAV1(1) ->AtSPL8    <---------KAN4(2)--------->At4g35610    <------ZmHOX2a(1) ----------->ARR10   ----------   tatataacgattgggaattttcttgctgactctgctgtaacttaaacgcaaatgaggaacatgaaatgttgataagattttctgttgtattcaagtttgt  18857300                                  <---------ANAC58                                  <---------ANAC58                               ------>ZmHOX2a(1)                             ------>ZmHOX2a(2)                             ==================================HOX2a_HOX2a                            ===================================HOX2a_HOX2a                            <------ZmHOX2a(2)                           --------->ARR14(2)                           --------->ARR11(3)                                    <-----------GT1                           <---------ARR11(3)                                  <---------AHL20(2)                           <---------ARR14(2)                                 --------->AHL20(2)                           <---------ARR14(3)                           --------->ANAC46                           --------->ARR14(3)                        <---------ARR14(2)          <--- ---MYB46(3)              <------ZmHOX2a(1)                          <---------ZAT14            ----- ---->GT1           ---------->DOF2        <------------CBF          --------->ZAT14     <---------HSFB2a(2) -->MYB52(2)     <---------AHL20(2)   <---------ANAC58               --------->ARR14(2)  <-----------RAV1(2) -->MYB.PH3(2)   --------->AHL20(2)   <---------ANAC58  ------>ZmHOX2a(1)------------>CBF--------->HSFB2a(2)   tacatagagagcctcttatttaaaaagaggatcctggtttgcctacattgtcccagtccttactaaacctgtatactcaatttaaaccggtccagaagat  18857400                                                                                                 <---                                                                                                <----                                                                                          ===========                                                                                    <-----------RAV1(1)                                                                                  <---------ANAC46                                                            <---------MYB52(1)    <---------ANAC58                                                           <---------RAP2.6(3)    <---------ANAC58                                                          <---------ANAC58    <------------CBF<------           ------------>CBF                    --------->HSFB2a(2)      ------->TEIL--------->ALFIN1         --------->ANAC58           <---------DAG2        <---------ANAC58  <-------TEIL  <----------DOF2     <---------HSFB2a(2)---------->DOF2        <---------HSFB2a(2)   --------->ANAC46    <---------ANAC58 ----TEIL--------->ANAC58           <----------DOF2  <----------DOF2 --------->ANAC58    <---------ANAC46 ---->CCA1(2)        --------->ETT(1)         <---------LBD16        --------->ANAC58    <---------ANAC58   tcaaaatcgcgaagccaattttgtcggaaagttcaaaacttttttgactctggaactttgccgttctatacacgaagctacattgagtgtggctttgtga  18857500                    <---------REM1(1)                <-----------------AGL1           --------->bZIP60(1)                                                      --------->ANAC58           <---------bZIP60(1)                                                      --------->ANAC58           <---------TGA1a <---------GLK1(1)                                        --------->ANAC46      <---------At4g35610<------ZmHOX2a(1)                      <---------ANAC58    <---------ANAC55(2)   <-----------GT1<-------GAMYB      <---------ANAC58           <---------ANAC58   <---------TOE1(2) ------WOX13(1) ----------------->AGL1                    <---------TOE1(3)   <---------ARR11(3) --------CBF ----------->HVH21       <---------ANAC58     <---------TOE2(3)   --------->ARR11(3) ====================bZIP_DOF  --------->ALFIN1   <-----------GT1    <----------DOF2--------->ANAC55(2) ---YAB1   ===============MYC_MYB   --------->ALFIN1     <-----------RAV1(2) <---------CCA1(2)   ttgttttacgctgatgtgaccgttgtaggaaatgtggagtcgtgccatttttcaacgattcaggtttcgagctttctctatatctcacgttatccatggg  18857600                     <---------At5g28300                   <---------MYB52(1)          --------->HSFC1(2)          <---------HSFB2a(1)        --------->GLK1(2)          <---------HSFC1(2)        <---------GLK1(2)          --------->HSFB2a(1)       <---------ARR14(2)               <---------ANAC46     <---------HSFB2a(2)            --------->ARR14(2)--------->ANAC55(2)     --------->HSFB2a(2) --------->ALFIN1             <---------ANAC55(2)     ------->TEIL   aaatgttacagaagtttctcagttactgtggagtttcagaatcgcgaggttttgatatgtaatcacttgttgagtcgacgaatcgatgaggctcgagagg  18857700                                                     --------->CCA1(2)                                                <---------ANAC46                                                --------->ANAC55(2)              <---------ANAC58                                                <---------ANAC55(2)              <---------ANAC46                                           <---------ICU4                   <---------MYB46(3)                              <----------DOF2  <---------LBD16             <--------P                      ===================bZIP_DOF   --------->ARR14(2)     <---------WOX13(1)                      ===================bZIP_DOF--------->LBD16         <---------MYB46(3)                      <---------TGA1a      --------->ATHB12              <------MYB46(1)                      --------->TGA1a     <---------YAB1                 <------MYB83     --------->YAB1------>ZmHOX2a(1)      --------->ICU4     <------ZmHOX2a(1)   <---------ANAC58    <---------ATHB12  --------->O2      --------->YAB1<-------TEIL   --------->ATHB12  ------->TEIL  --------->WOX13(1)  <---------O2   ---------->DOF2<---------ARR14(2) <---------WOX13(1)        ----   ttttcaatcaggttccatctcctcatgtgagtctttacacaaagatgattacgggatacacgaggagtaatagattggttgatgcgttgaatctgttcga  18857800                                                          <---------ANAC46                                                          ----------->GT1                                                         --------->ALFIN1                                                        --------->ZAT18                                                        <---------ZAT14                                                        --------->ZAT14                                                     <---------ANAC58                                                     <---------ANAC58                                                <---------ANAC58                                                <---------ANAC46                                                <---------ANAC58              ---------->DOF2                                           <---------MYB46(3)    <---------YAB1       <-----------HVH21                   --------->MYB55(2)  --------->CCA1(2) <---------At4g35610    <---------ANAC58                   --------->ATHB12--------->ALFIN1  --------->ZAT18    <---------ANAC58                  <---------YAB1 <---------ANAC46    <---------ZAT14 ----->ANAC46 --------->ARR11(3)    --------->YAB1 <---------ZAT14       --------->ZAT14   cgaaatgcctgtgagagatgttgtatcatggaattcgatgatcagtggttgtgtggagtgtggtgatatgaatactgcagtgaagctgttcgatgaaatg  18857900                                                                                                    -                                                                                                    <                                                           <-------TEIL                             -                                                          <--------P                                <                                                       <---------AtMYB61                            <                <---------ANAC46                       <---------TOE1(3)                            -                <---------AtLEC2     <---------ANAC58  <---------TOE2(3)                        -----        <---------ANAC46             <---------ANAC58  --------->DAG2                         -------        <---------ANAC58      --------->At5g28300    <--------P                           <---------ANAC58        <---------ANAC58     ----------->GT1 --------->MYB59   ---------->DOF2            <---------ANAC58   cctgagagaagcgtggtttcatggacagcgatggtaaatgggtgttttaggtctggtaaggttgatcaagcggagagattgttttatcaaatgcctgtga  18858000  Previous    Next  AGI:  At5g46460.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G09410.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66891.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 18857532    to: 18859625    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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