Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100     <-------GAMYB                                                                        <---------TOE2(3)   <---------ANAC58                                                                     ----------->ARR10   <---------ANAC58                                                      --------->KAN4(2)  <------MYB83                                        <-----------GT1   <---------KAN4(1) --------->ARR11(3)  <------MYB46(1)          ------>MYB46(1)         <---------ICU4 <---------ANAC46  --------->At4g35610 -------->ALFIN1           ------>MYB83        <---------YAB1     <---------ANAC58  --------->ZAT2 ------>ALFIN1           <---------MYB59  <---------ANAC58        <---------ANAC58  <---------At4g35610 -->DOF2           --------->YAB1         <---------ANAC58 <---------GLK1(2)     <---------At4g35610   gagtgggttgagtcagtaccatcagaaccaaactcgtttgagtttcgttctgatatttacagagtcttgagtgaatgttcttcatcagctaagatttgtt  18850100                                                                          --------->ANAC58                                                                          --------->ANAC58                                                                          --------->ANAC46            <---------MYB52(1)                                            --------->ANAC55(2)        <---------At5g28300                       ------>ZmHOX2a(1) --------->HSFB2a(2)       <-----------GT1                         ---------->ID1       --------->HSFC1(1)    <---------ICU4                         <---------ANAC58         <---------HSFB2a(2)   ------->TEIL  --------->ARR11(3)        <---------ANAC58 ---------->DOF2            --------->LBD16   tgatgaacattaccgtttagaacttgtacattttgctacttagttgtttgtcctcacatctaaaaagcttctagagacgcaatttatgcccgaacacatt  18850200                                                                                               <-----                                                                                             <-------                                                                                            ---------                          <----------DOF2                                                   <--------                          --------------------->WRI1                                        <--------                 <---------ICU4                                                             ---------                 --------->ATHB12                                                           ---------                <---------YAB1                                                              <--------  --------->ANAC58       <---------ANAC58                                <----------DOF2 --------->AHL20(2)  --------->ANAC58       <---------ANAC58--------->YAB1     ---------->DOF2            --------->AHL20(2)  --------->ANAC46 <---------YAB1       <---------YAB1     --------->AtMYB61--------->YAB1 --------->AHL20(2)   actcaagcaagagagaacatcattgtagcttttgacaaatcgatgataacaaaaacccaaaccaaagctattgctctttcatagcacaaaaaaatatatt  18850300                          <----------DOF2                          <---------DAG2    <------ZmHOX2a(2) ----AHL20(2)           <---------------AGL15         --------->ATHB12 --AHL20(2)             --------------->AGL15    <------------AtMYB77                            ---- >ARR11(3)             <-----------------AG --------->CCA1(2)                                    ---- -ARR11(3)         <-----------GT1         --------->ARR14(2)            <------ZmHOX2a(2)    ------- -AHL20(2)       --------->AHL20(1)        <---------ARR14(2)           --------->ARR11(3)  <-------- >AHL20(2)       --------->ARR11(3)        <---------ARR11(3)           <---------ARR11(3)  <-------- >AHL20(1)       <---------ARR11(3)        --------->AGP1           ---------->DOF2        --------->WRKY38(1) -AHL20(1)    --------->AHL20(2)           --------->ARR11(3) ------>NtERF2      <---------MYB52(1)   ttttatcaaatttcaaaaatatatccctctttttgggaaacttaagatccaactgttgatttgcagccaaaaaagatcgaaccgttgattctattgacca  18850400                                                            <---------AHL20(2)                                                            --------->YAB1      ------>ZmHOX2a(2)                                   <-----------TBP    --------->ARR11(3)                                  <---------AHL20(2)    <---------ARR11(3)                                 --------->AHL20(1)                     *TSS -->MYB46(1)                                           <---------AHL20(1)                   ------>ZmHOX2a(1) -->MYB83                                           --------->AHL20(2)           --------->LBD16 ----->CBF                                          <---------AHL20(2)          --------->HSFB2a(2) ---GT1<----------DOF2     <-----------GT1         <---------AHL20(2)  --------->ZAT14      <-------- -WRKY18(1)       <-----------GT1            --------->TOE2(3)  --------->ANAC46<---------HSFB2a(2)   atctctgatctttaacaaaattacatttttgaccatcacacagagaaccctaatttatatatttataagaaacttcagtcttccgaaaaacatcctttca  18850500             --------->At4g35610          <------ZmHOX2a(1)     --------->ALFIN1     <---------DEAR3(1)     <---------ANAC46    ------>NtERF2    <------NtERF2    <---------LBD16    --------->ATERF1(1)    <---------At4g35610   <---------RRTF1(1)   <---------RAP2.3(1)  <---------RRTF1(2)  <---------RAP2.3(2)  <---------RAP2.3(3)         <---------GLK1(2)  <---------ANAC58           <---------HSFC1(2)  <---------RRTF1(3)         <---------At4g35610  <---------RAP2.6(2)        --------->HSFC1(2)                                     <---------ARR11(3)  <---------ANAC46        <---------MYB52(1)                                        --------->ARR11(3)  <---------DEAR3(1)     <---------SPL7                                            <---------CCA1(2)<  <---------ANAC58    <---------At5g28300                    <----------DOF2  ------->TEIL          - <---------LBD16    <---------ATHB12                <---------GLK1(2)--------->MYB52(2)             < --DOF2<------NtERF2--------->MYB46(3)<----------DOF2------->TEIL  <---------MYB52(1)               -   cattgcggcggaggaagctctaatcaccgtaagcttctctctttcactctctctgaatctcatctttctgttagtttatgtatatatatctactgaaatc  18850600                                                                   <---------ANAC46                                                                   <---------ANAC58                                                               <-------GAMYB                                                           --------->ARR14(2)                                                           <---------ARR14(2)                                                          --------->ATERF1(1)                                                          <-------GAMYB                                                         <---------DEAR3(2)                                                         <---------MYB46(3)                                                        <---------ANAC46                                                        <---------DREB2C(2)               <---------CCA1(2)                        <---------ANAC58           --------->ANAC58                             <---------ANAC58           --------->ANAC46                             <---------DEAR3(1)           --------->ANAC58                        <---------ICU4  <---------ANAC58        ----------->HVH21                         --------->ICU4<---------MYB52(1) ---------HSFB2a(1)                          ----------->GT1  <---------ANAC58 -------->HSFC1(2)                          <------ZmHOX2a(1) <---------ANAC58   ----------->GT1 ---------HSFC1(2)<---------DAG2      <------ZmHOX2a(1) <---------RAP2.6(2)      <---------MYB46(3) -------->HSFB2a(1)<----------DOF2  <---------TOE2(3) ------------>AtMYB77      --------->ALFIN1   gatgcttcgtctcacgcataccttttgttgattttgttgaggaagaggagtaaaaatggcggttccgttgcttacgaagaaggtggtgaagaagaggtct  18850700                                        --------------->AtSPL8                                     --------->WRKY18(1)        <---------TOE2(3)                                    <-----------HVH21      <----------DOF2                                   --------->DEAR3(1)   ---------->ID1       <---------At4g35610       <---------At5g28300   <-----------GT1           <----------DOF2       --------->At4g35610 <---------TOE1(2)      <----------DOF2           <-------TEIL    <-------TEIL        ------>ZmHOX2a(2)         <---------DAG2<---------TOE1(3)<---------DAG2   gccaaattcatcagaccccagagtgatcgcagaatcaccgtcaaggtactcactttttctccttttcaggtttagagattcaacttttttcatgggtata  18850800                                               <---------ANAC58    <------MYB83         <------MYB46(1)                                               <---------ANAC58    <------MYB46(1)      <------MYB83                                            <---------WOX13(1)    --------->MYB59      --------->MYB59                                          -------->HAHB4      <--------HAHB4       <--------HAHB4                                          --------->ATHB12    <---------ICU4       <---------ICU4                                   <------ZmHOX2a(1)          --------->ATHB12     --------->ATHB12                                  ----------->GT1   ------>ZmHOX2a(1)             --------->ICU4                          --------->YAB1  <---------ICU4      --------->YAB1      <---------YAB1                       <----------DOF2   --------->ICU4      <---------YAB1     --------->YAB1          <---------LBD16<---------YAB1  <---------YAB1    --------->YAB1    --------->WOX13(1)   ---   agtttgttattctctggagtttaggctttgatagtgaggaaaaatgattgcttcctctgtattatcattaggtctaagtctatcatcattaggtctaagt  18850900         <------MYB46(1)         <------MYB83        --------->MYB59    <--------HAHB4    --------->ATHB12    <---------ICU4                                                                --------->ARR14(2)   <---------YAB1                                                                 <---------ARR14(2)   --------->ICU4                                                       --------->ZAT18 <--------P  < --------->YAB1       <---------GLK1(2)                              ---------->DOF2   <---------MYB52(1) ------>WOX13(1)--------->ZAT6    <---------YAB1             ------->TEIL <---------ANAC46      -----   ctatcatcattaggtctaagtctagattgtttcagtatgatgcattagggctatgagattgtgcatctagataatgccctgtggtatctggtagccagaa  18851000  Previous    Next  AGI:  At5g46420.1    Description:  16S rRNA processing protein RimM family. similar to UDP-N-acetylglucosamine pyrophosphorylase-related [Arabidopsis thaliana] (TAIR:AT1G31070.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO66893.1); contains InterPro domain PRC-barrel (InterPro:IPR007903); contains InterPro domain UTP--glucose-1-phosphate uridylyltransferase; (InterPro:IPR002618); contains InterPro domain RimM protein; (InterPro:IPR002676); contains InterPro domain 16S rRNA processing protein RimM; (InterPro:IPR011961) Range:  from: 18847182    to: 18850180    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g46430.1    Description:  60S ribosomal protein L32 (RPL32B). Identical to 60S ribosomal protein L32-2 (RPL32B) [Arabidopsis Thaliana] (GB:Q9FHG2); similar to 60S ribosomal protein L32 (RPL32A) [Arabidopsis thaliana] (TAIR:AT4G18100.1); similar to ly200 protein [Capsicum annuum] (GB:AAR83884.1); similar to ribosomal structural protein [Brassica juncea] (GB:ABM30195.1); contains InterPro domain Ribosomal protein L32e; (InterPro:IPR001515) Range:  from: 18850494    to: 18851791    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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