Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        --------->TOE1(2)                             ------>MYB46(1)             --------->ZAT14     --------->YAB1          ------>MYB83           <---------ETT(1)  <----------DOF2          <---------MYB59          --------->ANAC46 ------->ARR11(3)       <---------ARR14(2)         --------->MYB46(3) --------ARR11(3)      <------ZmHOX2a(1)         --------->MYB52(1)                          -------- ---->DOF2<---------ZAT6--------->ARR14(2)       -------->P          ---------->DOF2    ------>ZmHOX2a(1) --AHL20(2)     <------ZmHOX2a(1)     --------->TOE2(2)  <---------ZAT14        --------->MYB52(1)   agttctttgatagtcttaggaaacaggaacctatctacaacctatgaaggctacccgacaacactgttttttaaagctcgacaaacagtccttcttcatt  18846800                                  --------->AHL20(2)  --------->ANAC58            ----------->GT1      --------->YAB1             --------->LBD16    ----  --------->ANAC58           <---------TOE2(3)     --------->TOE2(3)         <---------LBD16    >>>>>  --------->ANAC46          ---------->DOF2   --------->At4g35610           <---------LBD16  -------- ->ATHB12          <---------ATERF1(1)  <---------YAB1                     <---------LBD16  ---------   gaaaacgaaacaaaactaggcctccgtctctaaagttaaaatatgatgagctatcttatttgcaatgcgattacattctcggggattacaaaaacagtaa  18846900                                                             <---------RAP2.6(3)                                            <---------At4g35610        <---------AHL20(2) ----->YAB1       ----------->HVH21        ----------->RAV1(1)--------->WRKY18(1) >>>>MYB98    <---------At5g28300       --------->AtLEC2  --------->ZAT14 ->At5g28300 <-----------GT1        <-----------HVH21     <---------ZAT14                    <------- -->GT1 ---------->DOF2           ------->TEIL--------------------->WRI1            <---------CCA1(2)   cataacaaaacaaagttaccatgacatgttcacatgaatgtcatgcagcataggttgaactgcagtcaagtatgttattgcccatcaaatctctaccact  18847000                                                                     ------>MYB83                                                                   <---------MYB111(2)<-----------HVH21                                                                   --------->AtMYB61  <-------MYC3                                                                   <---------MYB46(2) ------->MYC3                                                        --------->ANAC46              ------->MYC2                                                        --------->ANAC58             <---------ANAC55(2)                                               <-------PIF5        <---------MYB55(2)--------->ANAC46                                              <---------TGA1a      <---------MYB111(1)<-------MYC2                                         --------->ANAC58    --------->ANAC58        --------->ANAC58                                         --------->ANAC58    --------->ANAC58        --------->O2                                         --------->ANAC46    --------->ANAC46        --------->TGA1a                                        ------->TEIL    --------->ANAC58             <---------TGA1a                                      <---------ZAT14  ------->GAMYB ------>MYB46(1) <---------O2                                --------->ANAC58       ========================================MYC_MYB                             ===========================bZIP_DOF   --------->MYB46(3)--------->ANAC55(2)              <---------TOE2(3) --------->ANAC58      --------->MYB46(3)             --------->ANAC58         ===============================================bZIP_DOF  --------->ANAC46 <---------ALFIN1      <-----------GT1        ---------->DOF2  =================MYC_MYB        <---------ZAT18  <----------DOF2     --------->YAB1  --------->ZAT14 <---------MYB52(2)      --------->ZAT14       - --ALFIN1<----------DOF2     --------->MYB52(1)------->PIF5<---------ALFIN1   --------->ZAT18    ----   tctgcttttaacttttgaggctaataaaaaccaaaggcaatgcacggcacgaggcaacgagccactccaccaaacttaagtgctcacacgtgagacatgg  18847100                                                                                  *TSS                                                                             <-----------RAV1(1)                                                                             <---------MYB46(3)                                                                             <---------REM1(1)                          <------ZmHOX2a(2)                                <-------GAMYB                       --------->LBD16                                    <---------MYB46(3)                      --------->HSFB2a(2)                                 --------->MYB55(2)                     <---------LBD16                                    <-------GAMYB                 --------->HSFC1(2)                              <---------AHL20(2)            ------                 <---------HSFB2a(1)                    --------->ZAT2  <---------ANAC58       <-----        ------->TEIL--------->MYB52(1)                  <---------ZAT2  <---------ANAC58<-------TEIL -------->ANAC46 --------->HSFB2a(1)      <----------DOF2--------->TOE1(2)--------->MYB111(2) <------ --->TEIL --------->TOE1(2)           <----------DOF2---------->DOF2   <---------MYB46(3)  ----------   accccccatgaacatgagaaccctccggatcaaatagagtctttctttgtttcagtaaagctgggattttttttggttgttgttgcgacattcgtcgtat  18847200   <---------ANAC58                    <---------ZAT14   <---------ANAC46                    --------->ZAT2               --------->ANAC46   <---------ANAC58                    --------->ZAT14          <-----------HVH21 --->ARR14(2)                       <---------At4g35610        <----------DOF2 ----ARR14(2)               ----------->ARR10              <---------ATHB12 ---CCA1(2)          <XXXXXXXXXXXXXXXXXXXXMIR167A/B      --------->WOX13(1) >ID1              --------->ARR11(3)  <---------ZAT2 --------->TOE2(3)      <-----------GT1 <-------   ccattgcttagggagagaagagataatgctgagagcttcgctgctctgttcttcgacctcaatcactttcacaccaattcaactattcaatcccaatagt  18847300                                                              <---------ANAC55(2)                                                              <---------TGA1a            <---------ARR14(2)                                                              <---------O2              <---------GLK1(1)                <-------TEIL                                  --------->TGA1a           --------->GLK1(1)               --------->ARR14(1)                             --------->O2        ------->PIF5               --------->CCA1(2)                       ------>MYB83      ------>ZmHOX2a(1)              --------->ARR11(1)                       ------>MYB46(1) --------->At4g35610          -              --------->ARR14(2)         <----------DOF2  <-----------HVH21   <---------ZAT2  -------              <---------ARR14(2)         ===============================bZIP_DOF  <-------PIF5<------              <---------GLK1(2)  <-----------HVH21 --------->SPL7      <---------At4g35610    ------- --ATHB12   ----------->ARR10   ------>ZmHOX2a(1)<---------SPL7        ----------->RAV1(2)    <------   tcccatcgtttcccaagattcgaactatctcgtcctgtctcggctttgtctcgtaccaaatgtcacttgagtctcctgagagctcgtgggaaatccagct  18847400               --------->DOF5.7(2)               --------->At5g28300          <---------ALFIN1         <---------ABI4(2)         --------->ZAT2         <---------ZAT2     --------->ANAC46                    <---------YAB1 ----->ZmHOX2a(1)                       <-----------GT1 -->ZAT2 --------->At4g35610  --------->ATHB12 ---ZAT2 <---------At4g35610 <---------YAB1               <-----------RAV1(1)             ----------- -->At4g35610  <---------MYB52(1)  <---------ANAC46    --------->GLK1(2)               <---------ANAC46 ---At4g35610 ----------->GT1<---------AHL20(2)     <---------YAB1     <----------DOF2 --------->ALFIN1   tcctcactcgcagcaccggtaactagttttttttattgggtttatccttgttttgtgattctgtggtctctgtctttttctcttccaaggtgtggaaact  18847500                                         <---------AHL20(2)                                         <                                     -------->ATHB1                                              ----                                     --------->ATHB51                                       <--------                                     --------->ATHB12                                  ------>ZmHOX2a(2)                              --------->At4g35610               <----------DOF2      --------->ARR11(3)                        <---------MYB52(1)                  ---------->ID1<----------DOF2   --------- >GT1              --------->GLK1(2)<---------YAB1 <---------YAB1   ---------->ID1   <---------ARR11(3)   taagaagttttgggttttgagaagctgttagcaactgtattattgaattgattctaatttttgtttctttggctctctttgttttttgatcttcagctac  18847600                                                 <------MYB46(1)                                                 <------MYB83                                            <---------TOE1(3)                                            <---------TOE2(3)                                            <---------AtMYB61                                        <-------GAMYB                                               -    <---------At4g35610                <------MYB83<---------GLK1(2)                      <---------AtLEC2   ------->TEIL                        <------MYB46(1)                                --------->CCA1(2) ---------REM1(1)                     <---------AtMYB61                              --------->ARR14(2) ----->ICU4                        --------->ARR14(2) <---------ANAC58               <---------ARR14(2) -At4g35610                        <---------ARR14(2) <---------ANAC58               <---------GLK1(2) >At4g35610                   <---------ANAC46 <--------P          <---------AtLEC2----------->ARR10-   tgatgaagctgttgaaactagtagtaacagtggattggatttggttgaggttggattcttgtctggtgttcatggccttcaaggcgagatttgcataaaa  18847700  Previous    Next  AGI:  At5g46417.1    Description:  unknown protein Range:  from: 18847008    to: 18847115    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g46420.1    Description:  16S rRNA processing protein RimM family. similar to UDP-N-acetylglucosamine pyrophosphorylase-related [Arabidopsis thaliana] (TAIR:AT1G31070.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO66893.1); contains InterPro domain PRC-barrel (InterPro:IPR007903); contains InterPro domain UTP--glucose-1-phosphate uridylyltransferase; (InterPro:IPR002618); contains InterPro domain RimM protein; (InterPro:IPR002676); contains InterPro domain 16S rRNA processing protein RimM; (InterPro:IPR011961) Range:  from: 18847182    to: 18850180    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version