Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          <---------YAB1                                                                        <---------AHL20(2)                                                                       <---------AHL20(2)                                                                       --------->AHL20(2)                                                                      --------->YAB1                                              --------->WOX13(1)   <---------AHL20(2)                                         <<<<<<<<<MYB2            --------->AHL20(2)                                       <------MYB46(1)            <---------AHL20(1)                  <---------ANAC55(2)  <------MYB83               <---------AHL20(2)       --------->AHL20(2)         --------->AHL20(2)           --------->MYB59          --------->WOX13(1)          <---------AHL20(2) --->RAV1(2) ----------->GT1        <---------MYB52(1)        <---------AHL20(2)          <---------AHL20(2)   agacaaaacaaaaaaatgttacataaacttcaatttcagtttggttttcaatccaatttagtattcaattaattttaattcacttcggtttatttattta  18841900                   --------->ZAT18                   <---------ZAT14                   <---------ZAT18                   --------->ZAT14                 <---------ZAT18                                        ----------->GT1                <---------ANAC46                                        <---------ANAC46                <---------ANAC58                                      ----------->GT1                <---------ANAC58                              --------->At4g35610          <------MYB83                         <---------YAB1 <---------At4g35610          <------MYB46(1)                    --------->YAB1  --------->MYB52(1)  --------->AHL20(2)   tctggttcaatttggtttgtgtgcactaaatgagttttggttatcgattgtaattgaagaaatcaactgatatggtgtaaaaaaaaaatcaattcgattt  18842000                <------MYB83                <------MYB46(1)                                                            <---------YAB1               <---------AtMYB61                                              <---------ANAC46  <----             <---------MYB52(1)         <---------AHL20(2)       --------->AHL20(2)   <---------ANAC58           <---------ANAC58            --------->AHL20(2)        <---------AHL20(2)   <---------ANAC46           <---------ANAC46     <--------P             --------->ZAT6       <---------ANAC46  <------           <---------ANAC58    <---------MYB52(1) --------->ANAC58          <------MYB83<---------YAB1        --------->ARR14(2)     <-------GAMYB      --------->ANAC58          <------MYB46(1)--------->ICU4        <---------ARR14(2)    --------->LBD16   <------ZmHOX2a(1)--------->YAB1       --------->ANAC55(2)   --------->MYB52(1)       <---------LBD16  <---------------AtSPL8---------->DOF2    <---------ANAC58   <-----------GT1        <-----------GT1   ---------->DOF2   --------->WOX13(1)  <XXXXXXXXXXXXXXXXXX   tggtttaacggtttcgtttggttttatttttccggttgcgattttataaaggacggaacagtagcaattaaaagtatttggtgtattttcgtgattattt  18842100                                                                                              <------                                                                                              =======                                                                                              <------                                                                                    --------->ANAC46                                     <---------ARR11(3)         --------->DAG2    <---------ANAC55(2)                                     --------->ARR11(3)        ---------->DOF2    --------->ANAC46                                     --------->GLK1(2)<---------ICU4              --------->ANAC55(2)                                    --------->RVE1(1) --------->AHL20(2)          --------->ANAC58                             ----------->GT1         --------->AHL20(2)           --------->ANAC58  --------->GLK1(2)         <---------HSFB2a(2)      <---------AHL20(2)         <---------ALFIN1 <--- -----AHL20(2)           --------->ARR14(2)         <---------AHL20(1)         <---------REM1(2)----- ---YAB1                 <---------ARR14(2)        --------->YAB1            --------->REM1(1)======= XXMIR420               <---------CCA1(2)        --------->AHL20(2)  --------->ALFIN1<-----------HVH21   taagtttctgttttctgttttgctccaaatctcgaaaaaaatctaaaattttaaaataatttcaaaaaagcgaggggcttcaacacgcgtcaaattatgt  18842200                                       <------MYB83                                       <------MYB46(1)                                  --------->MYB55(2)                                  <---------MYB46(3)                                  <---------DEAR3(2)                                  <------MYB83                             ------->MYC4                             ------->MYC3                             <-------MYC4                             <-------MYC2                             ------->MYC2                             <-------MYC3                            ==============================================bZIP_DOF                            --------->O2           --------->At4g35610   <---------AtMYB61           <---------ZAT2   --------->ANAC55(2)                    <----------ID1           <---------At4g35610  <--------P                     ---------->DOF2           ----------->RAV1(2)--------->ALFIN1                --------->AtMYB61         <-----------RAV1(2)=============MYC_MYB          --------->RAP2.3(3) -----RAV1(1)               <---------ANAC55(2)           --------->DEAR3(1) ====================RAV    <---------O2  <------------CBF--------->MYB46(3)              --------->At4g35610 ---ANAC46 --------->ZAT2   <---------TGA1a             --------->PCF2             <------NtERF2  --- ------MYB46(3)      --------->YAB1   --------->MYB59   <---------ZAT18            <----------------- ---->ALFIN1        <---------YAB1<------MYB46(1)       --------->ZAT18          --------->DEAR3(1) ======================RAV  --------->TGA1a            --------->DEAR3(1)       --------->ATERF1(1)   gggtgagtcgtccagctggtctattataacacgtgttggttcggtattggattagaagcgcccaccaaaggaacaaatcgtagccgtcgattagatgaaa  18842300                   <---------CCA1(2)               <---------ANAC58               <---------ANAC58       <------NtERF2      <---------RAP2.6(3)                <---------LBD16      <-----------HVH21                 <---------ANAC58     >>>>>>>>>AtERF-3                   --------->MYB52(2)     --------->DEAR3(1)                 <---------ANAC58     --------->RAP2.3(2)                <---------ANAC46     --------->RAP2.6(2)         <-----------GT1   <---------ANAC46     >>>>>>>>>AtERF-4<---------YAB1   <---------MYB52(1)          --------->DAG2     --------->RAP2.3(3)         <---------WRKY18(1)             ---------->DOF2               ------    --------->RAP2.3(1)       *TSS<---------At5g28300      ---------->DOF2                    ------- ------->DOF2  <---------ANAC46 --------->WRKY38(1)<---------ANAC58                         --------- ----WRI1   --------->DAG2    <------------CBF     <---------ANAC58                      --------->PCF2   taaagagccgtcataaggcttgtatcattctctattgaccgttcgtggaagttgtgtgagagaaagaaaaagcccagagagaagagagagagacccacaa  18842400                                    <---------At4g35610                                    --------->At4g35610                             --------->ANAC58                    <-------TEIL      ---------->DOF2        --------->ANAC46                  <---------ARR14(2) ----->RAV1(1)               --------->ANAC58                  --------->ARR14(2)        ------>ZmHOX2a(2) -->ANAC46                 ------>NtERF2                     <---------TOE1(2)           ============ >ANAC46                  --------->DEAR3(1)         ------>ZmHOX2a(1)        --------->LBD16       -   cacaaacacaaagtagacgaagaagacgacgacgaaacagctctcttcttctctcctctctctcaggtccgtcttcttcccccaaatttgatcgcttcct  18842500                               <---------MYB52(1)                             <---------ANAC58                         --------->HSFB2a(1)                         <---------HSFC1(2)                         --------->HSFC1(2)                    --------->HSFB2a(2)    <-----------GT1                                          <            ---------->ID1   <---------ANAC58                                                 <------        <----------DOF2  <---------HSFB2a(1)                                            <---------GLK1(1) ======HOX2a_HOX2a <---------LBD16  <-----------GT1                               <----------DOF2 <-- ----->ZmHOX2a(1) ----------->RAV1(2)  <---------YAB1                  <-----------RAV1(1)  <--------   tcctcttcttctttgtcttcacctggaaatttcgtttttttcttattacattttttgttttttgttttcttctgtgttgtttgactttcgatttctgatt  18842600    <---------MYB46(3)   <--------P  <-------GAMYB                                                        <-----------GT1 <---------MYB46(3)                                                --------->DAG2 ---------AtMYB61                                                 ---------->DOF2 ---GLK1(2)  <----------DOF2                         <---------At4g35610 ---------RAV1(1)    <-----------RAV1(1)             --------->At4g35610                          <-- -YAB1    <---------YAB1                             ----------->RAV1(2)   <----------DOF2   <-------   ctgtggttgtttatgctttgattttgttggatttgttagaaaaactttccatttcatctgggttttgaaaaagtttcctttttttttttttttggatttg  18842700                                                                                       <---------At4g35610                                                                                     <---------ZAT18                                                                                     --------->ZAT18                                                                                    <---------ANAC58                             <---------MYB52(1)                             <---------ANAC58                          <-------TEIL                                  --------->HSFC1(2)                       <---------ZAT2                                   <---------HSFC1(2)                       <---------At4g35610                              --------->HSFB2a(1)                       --------->ZAT2                                   <---------HSFB2a(1) -------At4g35610      --------->At4g35610                 <---------YAB1   <---------ANAC58      <-- --GLK1(1)  <----------DOF2<---------ANAC46     <---------YAB1      --------->YAB1  <---------ANAC58   tgctggttttgtgacttttgttctcagcttcgtttatttgtggtgagtttatgtttgaattttgattctatcgaaatttcgtttttgtgtgctaatttgt  18842800  Previous    Next  AGI:  At5g46400.1    Description:  AT PRP39-2. similar to PRP39, binding [Arabidopsis thaliana] (TAIR:AT1G04080.1); similar to hypothetical protein OsJ_026050 [Oryza sativa (japonica cultivar-group)] (GB:EAZ42567.1); contains InterPro domain RNA-processing protein, HAT helix; (InterPro:IPR003107) Range:  from: 18837259    to: 18841877    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g46410.1    Description:  NLI interacting factor (NIF) family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G18140.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66897.1); contains InterPro domain NLI interacting factor (InterPro:IPR004274); contains InterPro domain Dullard-like phosphatase domain; (InterPro:IPR011948) Range:  from: 18842330    to: 18846448    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version