Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            --------->YAB1                                                                                         <------ZmHOX2a(2)                                                                                      <---------YAB1    --------->TOE2(3)                                                         ==================HOX2a_HOX2a    --------->TOE1(3)                                                         ------>ZmHOX2a(1)  ------->TEIL                                             ---------->DOF2   --------->TOE1(2) ------->ANAC58                                        <---------ZAT6        --------->TOE2(2) ------->ANAC46                   --------->LBD16      ----------->GT1       --------->TOE2(3)     -- ------->ANAC58              --------->WOX13(1)      --------->ZAT14      <---------ARR14(2)    ----- ---ICU4                   <---------ATHB12   --------->ZAT18             --------->ARR14(2)    -----   cacgaaccttaacaattgtatcatttcaaatcaatccagagcatcaattgcacagtagagtaaaagacccaaatcaaatcctaagattacgatcaaaatc  18753600                                                                         <---------REM1(1)                                                                         --------->ALFIN1                                                                    --------->LBD16                                                                   <---------ANAC58                                                                   <---------ANAC46                                                                   <---------HSFB2a(2)                                                                   <---------ANAC55(2)                                                                   <---------ANAC58                                                                   --------->HSFB2a(2)              <                                                                  <---------LBD16                   <                                                               <---------ANAC58                     <                                                               <---------ANAC58                    <-      ---------->DOF2                      --------->ATHB12   <------MYB46(1)                      <- --------->ICU4                  --------->ATHB12             <------MYB83     <----------DOF2     <- -------->DOF2                 <----------DOF2               --------->MYB111(1)       --------->LBD16 ------>GT1                   --------->TOE2(3)              --------->MYB59  <---------ANAC58     <- ---->YAB1                 <---------ARR14(2)                <---------TOE1(2)<---------ANAC58    ---   gtaaagatgaaagaaatcgaaatcgagcgaaacctttattgagcttgattacaaacttcttagtaggttgcggaagtgtagctttcttccgagagagatt  18753700               --------->ARR14(2)               <---------ARR14(2)               --------->ARR11(3)               <---------ARR11(3)          <-------GAMYB       <------NtERF2      ------>NtERF2      --------->LBD16     <---------ANAC46    --------->ATERF1(1)    <---------LBD16    <------NtERF2   <---------RRTF1(1)   <---------RAP2.6(1)   ------>NtERF2   <---------ORA47(2)   <---------ATERF1(1)   <---------DEAR4(2)   <---------ERF1   <---------RAP2.3(1)  <---------RAP2.3(3)  <---------RRTF1(2)                              <---------DEAR3(1)  <---------RAP2.3(2)                            <------NtERF2  <---------RRTF1(3)                            <---------ERF1  <---------ANAC46                             <---------RRTF1(2)  --------->ALFIN1                             <---------DEAR4(1)  <---------RAP2.6(2)                          <---------RRTF1(3)  <---------DEAR3(1)                           <---------RAP2.3(3)  --------->DEAR3(1)                           <---------DREB2C(2)  --------->ATERF1(2)                          <---------RAP2.6(2)  <---------ATERF1(2)                          <---------DEAR3(1) <------NtERF2<---------CCA1(2)                --------->ETT(1) <---------ABI4(1)                             <---------RAP2.3(2) --------->ATERF1(1)                           <---------At1g77200 --------->RAP2.3(1)                  --------->MYB46(3) ---------ATERF1(1)                   <---------MYB55(2) ---------RRTF1(1)                    <---------MYB111(1) ---------RAP2.3(1)             --------->ANAC58<---------ORA47(2) --------RRTF1(3)               --------->ANAC58<---------RAP2.3(1)      <---------AtMYB61 --------DEAR3(1)             ---------->DOF2 --------->RAP2.6(3)        --------->ALFIN1 --------RAP2.3(2)          <---------YAB1   <-----------HVH21<-------GAMYB --------->ALFIN1  <------ --------RAP2.6(2)    ------>ZmHOX2a(1)------->GAMYB<------NtERF2 <---------ANAC46         ---------- ------>At4g35610------>ZmHOX2a(2)    <---------MYB111(2)    --------->ALFIN1  <---------AtMYB61   agcggcggcgggagttggatcttcctccatatgaaagccaacaaccttgtcggcggtattagggtgttgaggggaatggtggaggtcgtttttggccttt  18753800                                             <------NtERF2         <------ZmHOX2a(1)                                            --------->LBD16       <------MYB46(1)                                          <------NtERF2           <------MYB83                                          <---------LBD16     <------MYB46(1)                                          --------->ATERF1(1) <------MYB83                                         <---------RAP2.3(1) --------->MYB111(1)                                        <---------RAP2.3(2)  <---------AtMYB61                                       --------->At4g35610   <---------MYB46(3)                                    --------->At4g35610      --------->MYB59                                    <---------At4g35610      --------->MYB111(2)                                 <------NtERF2               --------->MYB46(2)                              <------NtERF2<---------ANAC46 <---------MYB55(1)                 <----- <---------At4g35610       <------NtERF2<---------DEAR3(1) <---------MYB52(1)                  <----- ----DOF2    ----------->GT1<---------DEAR3(1)  ---------->DOF2 <--------P  --------->AtLEC2   <----- >ID1  <------ZmHOX2a(1)  <-----------HVH21<---------DEAR3(1)--------->MYB55(2)     ----------->GT1   ttcatcggaggagaagagtaagaagagtcgtcggaggcagaagcggcggagaaagtagagcgtttggtaggaagagacatgaaaatgggtgaaaattgtg  18753900                                              ------->GAMYB                 --------->ZAT18                                             --------->MYB46(3)             <---------ZAT18                                           --------->YAB1                   <---------ZAT14                                           <-----------GT1                  --------->ZAT14                                        <---------ICU4                    --------->ZAT14                                        --------->YAB1               --------->ZAT18                                       <---------AHL20(2)            <---------ZAT14    --------->GLK1(2)              ------>ZmHOX2a(1)                 <---------ZAT18 ----ANAC58                   --------->WOX13(1)                 --------->DAG2 ----ANAC46        >>>>>>>>>TBF1  --------->TOE2(3)<----------DOF2   --------->ZAT14 ----ANAC58    <------ZmHOX2a(1) --------->YAB1-------->P       ---------->DOF2         <----------DOF2   tgagagaatcacgaagaggaagaagaagacatcaatcctaaataataacaaccctttctctctaccaaaagcgcactgtgcactctctctcttttttttt  18754000               --------->ARR14(2)               <---------ARR14(2)            --------->ANAC46          --------->ANAC58                                      --------->AHL20(2)           <-------          --------->ANAC46                                      <---------AHL20(2)           --------          --------->ANAC58                                    <-----------TBP                <-------         ------>MYB83                              <---------RVE1(1)                      --------->AHL20(1)         ------>MYB46(1)               --------->LBD16      <---------AHL20(2)           <---------AHL20(2)         -------->P                  *TSS          <---------CCA1(1)                     --------->AHL20(2)       --------->TOE1(2)         <---------ETT(1) <---------ARR11(3)                     --------->ATHB51       --------->AtMYB61         ----------->HVH21<---------GLK1(2)                --------->YAB1 <--       --------->TOE2(2)        --------->DEAR3(2)--------->ARR11(3)          --------->AHL20(2)<----   ttgctcaaacctacgcgaaaactcgcgatttagacccgacccgagaaatgaagattttttgtttatttatatactctgaataaaatcagaattattttat  18754100                                                                                  <-------GAMYB                           --------->YAB1                                        <---------ANAC58                   <-----------GT1                                              <-------TEIL                <--------HAHB4                                            ----------->ARR10                --------->ATHB51                 --------->AHL20(2)   <---------ICU4      --------->YAB1      <---------YAB1 --------->ATHB12             --------->YAB1     <-------TEIL --------->ICU4        <---------AHL20(2)            --------->ATHB12       <------- --AHL20(2)    --------->ICU4           <---------YAB1                <--------ATHB1         -------- ->AHL20(2)    <---------YAB1        --------->AHL20(1)              <---------ATHB12        <------- --AHL20(1)  --------->YAB1----------->GT1   --------->YAB1          <---------YAB1     <---------AHL20(2) -------AHL20(2)<---------ICU4       <---------AHL20(1)              --------->ICU4<---------MYB52(1) -------TBP <---------ATHB12      --------->AHL20(2)          <---------At5g28300<---------ANAC58   <   ttatacattcataaatcataattactatatgataaaaaaaatattattgataaaaatagacatataccgcaatgattagatgtgcgttgttttaatggtt  18754200                                     <---------ICU4                                     --------->YAB1                                    --------->ICU4                                  --------->YAB1                                --------->AHL20(2)           ----------->GT1         ----------->GT1        --------->AHL20(1)        <---------AtLEC2   --------->YAB1              --------->YAB1    <---------ANAC58                   <---------AHL20(2) --ICU4---------->DOF2     --------->AHL20(2)    <---------ANAC46                  --------->AHL20(2) --->GT1--------->DAG2--------->AHL20(2)    <-----------RAV1(1)                 <----------DOF2  <--- --MYB46(3)----------->GT1--------->AHL20(2)<---------MYB46(3)            <-----------GT1        <--- ---------ICU4  ------------------------>ANAC81  <---------ANAC58      --------->YAB1      <---------   actaatcacaaaagtgaaaaacaaaaaaataaaaaataataatcaattgttgcctgttttgtatggttattttttataactacttttaaattttaactac  18754300                                                                                          ---------->DOF2                                                                                   ==================                                                                                   ---------->DOF2   <---------YAB1                                                             --------------->AGL15 <---------AHL20(2)             <---------ARR11(1)                            <---------------AGL15<- -------DOF2                   <---------CCA1(2)             <---------AHL20(2)   <---------AHL20(2)< ------DAG2                  --------->YAB1                  <---------YAB1  <---------YAB1    ------ --GT1             <---------At4g35610      <---------AHL20(2)             <-----------GT1===========   tttttatttttagtttttgacaactgataaatcatatctattgtatatttttagagtcgaatttttattaagtcattttacgatttaaagaataaagaat  18754400                                                          <---------AHL20(2)                                                      <---------AHL20(2)               <---------ANAC58                      <---------YAB1     <---------O2                                   <---------AHL20(2)     --------->O2                           <---------AHL20(2)     --------->TGA1a                      <---------AHL20(2)     <---------TGA1a                     --------->AHL20(1)                              <---------ARR11(3) ==============bZIP_DOF     <------ZmHOX2a(2)     <---------YAB1                         <---------AHL20(1) ----------HVH21           <---------ARR11(3)   <---------AHL20(2)                      <---------CCA1(2) ------ZmHOX2a(2)  <---------ARR11(3)    <---------AHL20(1) ---------->DOF2        <-----------GT1 --->GLK1(2)   <---------ANAC58<---------YAB1  <---------YAB1                  <---------AHL20(2) <-- ==============bZIP_DOF    --------->ARR11(3) <---------AHL20(2)        <---------At4g35610     <----   cgatcacacgagtcgatgcttgatatttagatcatttttgatatatatttttatttttattttaaagaaaattgagttgattttttttccatatatttct  18754500  Previous    Next  AGI:  At5g46210.1    Description:  CUL4 (CULLIN4); protein binding / ubiquitin-protein ligase. similar to ATCUL3B/CUL3B (Cullin 3B), protein binding / ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G69670.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75926.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40323.1); similar to cullin 4 [Solanum lycopersicum] (GB:ABX09988.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Cullin homology; (InterPro:IPR016158); contains InterPro domain Cullin repeat-like (InterPro:IPR016159); contains InterPro domain Cullin, N-terminal region; (InterP Range:  from: 18748645    to: 18754037    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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