Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            --------->MYB52(1)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    <---------------AGL15                  <---------ANAC58   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        ------>ZmHOX2a(1)                  <---------ANAC58 <---------ICU4                                --------->TOE2(3)                  <---------ANAC46 --------->YAB1                                --------->TOE1(3)  <        <xxxxxxxxxxxxxxxxsmallRNA(i) <---------YAB1     <---------YAB1        <xxxxxxxxxxxxxxxxsmallRNA(i)       --------->ANAC58 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  --------->GLK1(2)    --       --------->ANAC58xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  <---------GLK1(2)     <- ---->TEIL     <---------WOX13(1) <---------YAB1     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     ------- --->ANAC58   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <----------DOF2       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --->ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------DAG2  ----------->HVH21<---------ATHB12 --->ANAC46xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------>ZmHOX2a(1)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   aaccgtttcaagcccagattgcttagaaggtaactgatcatggttaacatcctcacttttcattgtaatcgatgacagagattccttaatcaaggagaga  18686900                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              --------->CCA1(2)                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   <--------ATHB1                   -------->HAHB4                   <---------ICU4                                                                  <x                   --------->ATHB51          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 --                  --------->ICU4   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                           ---                  --------->AHL20(2)        ----------->GT1                                       ---                  <---------ATHB12--------->ANAC58                                                ---              --------->AHL20(2)xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                               <---           ------>MYB83      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                            -------           ------>MYB46(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                 <xxxxxxxxxxxxxxxxxxxx <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------YAB1                   --------->ATHB12 ------- ---------AHL20(2)<---------AHL20(2)   <---------At4g35610<---------AHL20(2)<---------YAB1    <------ ------->AHL20(2) <---------ATHB51--------->ANAC58  --------->YAB1         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) --------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <------- ---->GT1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->YAB1        <----------DOF2         <---------TOE2(3)   aataaatggaaccaaatcaaataattgttgagagacagggaagatgatgataaatcatatgaaattgggcttttagttttgatttggaatattgagattc  18687000                                                                                          xxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                       <---------MYB46(3)                                                                                      <---------AtMYB61                                                                                      xxxxxxxxxxxxxxx                                                                                    <xxxxxxxxxxxxxxxx                                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                             ---------->DOF2                                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                          <------ZmHOX2a(1)<---------    --------->AHL20(2)                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <---------AHL20(2)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxsmallRNA(i)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------->LBD16                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------>ANAC46                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -------->GT1                                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------>LBD16                                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ------LBD16                                       ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -->GLK1(1)                          ---------->DOF2             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxsmallRNA(si3)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) -->GLK1(2)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ---GLK1(1)            ---------->DOF2       xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxxx --GLK1(2)    <---------YAB1   ----------->GT1----------->GT1   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<   ccgtaaaaaattggttttgattttggaaagagagagaaataaagacgatggagaaaagagttgagagagaaaatgaggagaaagcgttgtggttcagagg  18687100                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       xxxxxxxxxxxxxxxx>smallRNA(se3)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                      xxxxxxxxxxxxxxxxx>smallRNA(le3)                      xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      --------->DAG2          <---------------AGL15                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      xxxxxxxxxxxxxxxx>smallRNA(fl3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                     ---------->DOF2         <-----------------AGL1                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                  <------MYB46(1)  <----------DOF2                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                  ----------->GT1  <xxxxxxxxxxxxxxxxxsmallRNA(se3)                  <------MYB83 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 --------->MYB59xxxxxxxxxxxxxxxx>smallRNA(s)                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              xxxxxxxxxxxxxxxxxxx>smallRNA(le3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  ----------->GT1             --------->ATHB12xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <---------YAB1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------------->AGL15        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)----------------->AGL1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       ----------------->AG                  ----------->GT1 xxxxxxxxxxxx>smallRNA(le3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <---------ANAC46 xxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         --------->DAG2        --------- xxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          ---------->DOF2     --------->YAB1 xxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <- --RAV1(2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  --------->MYB52(1)<---------HSFB2a(2)   <---------ICU4 xxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)----------->GT1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  ---------->DOF2 <--------P  --------->HSFB2a(2)  --------->ICU4   gcaatttgggaattttgatttggtaaagtgccttctcctttcaaagtgcctaaacgggtaaatagttttctaaaagtgtcttataatgtaataatctcaa  18687200                                                                                            <--------                         --------->ANAC58                                                  <---------YAB1       ---------->DOF2   --------->ANAC58                                                --------->YAB1 >TOE2(3)              ---------->DOF2      <---------YAB1   ------------>CBF          --------->AHL20(2) ----------GT1  <-----------GT1     --------->YAB1     --------->ZAT6           <------NtERF2   taaacaattcaaagctgtataccattcaagcccattattcaaaattttgtttgactaatactattcaatcgggtctatgggcctcagaaaataataaatg  18687300                                                                                      --------->At4g35610                                                                                      <---------At4g35610                                                                                      ----------->GT1                                                                                    <-----------RAV1(2)                                                                                   <------NtERF2                                                                                   <---------MYB52(1)                                                                                  <-----------HVH21                                                                                  <---------SPL7                                                                                  <---------RAP2.6(3)                                                                                  ------>NtERF2                                                                                  <-----------TGA1                                               <---------ANAC58                  --------->DEAR3(1)                                               <---------ANAC58                  --------->ATERF1(2)                                            *TSS                                 --------->RAP2.3(3)                                      --------->TOE1(3)                          <---------ATERF1(2)                                      --------->TOE2(3)                 <---------ARR11(3)               ------------>CBF ------>ZmHOX2a(2)                       --------->ARR11(3) --------->REM1(1) -AHL20(2)    <<<<<<<<<<<<<<<<<LFY    <----------DOF2  --------->AHL20(2)       --------->RAP2.3(1)   ggccttaaatacttggaaacaatggatagatcgatctcaactttaaaatgcgtccaaaaatataaacaaacaaacatctctcgccgtcaggttacatcta  18687400                            --------->LBD16                           --------->ANAC58               <---------ALFIN1              --------->MYB46(3)              <---------ABI4(2)       ---------->DOF2     --------->ANAC46     --------->LBD16       --------->ANAC58    --------->DEAR3(1)    <---------LBD16                          <---------At4g35610   <------NtERF2         ------>ZmHOX2a(1)<---------MYB59          --------->At4g35610         ------  <---------ATERF1(1)--------->ARR14(2)   --------->TOE2(3)     <--------P                     ======  ------>NtERF2--------->AtMYB61 --------->YAB1              --------->LBD16                 -------- <---------ALFIN1 --------->DEAR3(1)      --------->TOE1(3)----------->RAV1(2)    <---------ICU4    < --------->DEAR3(1)<-----------HVH21--------->YAB1         <---------LBD16       <---------ATHB12----   tcgccaccgcaaagagaccaccgtctcctccgcaatcttcataacctaaacaacactcatcccctggtaagctcaattctctaatcaattcaatctcctg  18687500       ------>ZmHOX2a(2)     <---------ARR14(2)     --------->ARR14(2)                    <----------DOF2     <---------AGP1                <---------ARR14(2)                     <---------ANAC46    ------>ZmHOX2a(2) >ZmHOX2a(1)                       --------->ARR14(2)      <---------TOE2(3)                 <------ZmHOX2a(2) =============HOX2a_HOX2a          ------->TEIL            <---------TOE1(3)                <-------- --->RAV1(2)                    --------->ANAC58  ----------->GT1<-----------GT1            --------- ---------bZIP60(1)             --------->ANAC58  <---------HSFB2a(2)     <---------ANAC58  --------- ------->HVH21  --------->ANAC46--------->ANAC46  --------->HSFB2a(2)     <---------ANAC58  <--------   tgatgtcgatctgtttctactcaagttcaatctcacgaatcccttctttgttctgtaaattagggtttcacgatttgtgtgtctagggattcaagatccc  18687600                                                                           <----------DOF2                                                                       --------->GLK1(1)                                                                       <---------GLK1(1)                                                                    <---------TOE2(3)                                                               <---------ICU4                                                               -------->ATHB1                                                               --------->ATHB51                                                               --------->ATHB12                                                               <--------ATHB1                       < <---------ARR11(3)                                           <---------ATHB51                      - --------->ARR11(3)                                           <---------YAB1                      --- -ARR14(2)                    --------->ICU4  --------->ATHB12--------->ICU4               <--------- >ARR11(3)             ---------->DOF2       <---------YAB1   <---------ATHB12            <---------DAG2 >ARR14(2)           <---------YAB1       <----------DOF2   --------->WOX13(1)          <---------ARR11(3) -ARR11(3)        --------->ICU4       ---------->ID1      ------------>ATHB5           --------->ARR11(3)   taatatctgatcatctagtaattgtgaaagtattgatttttgttcttttgatttgagtttagcaattattgagatttctttgaagttgaataccttttct  18687700        ---------->DOF2    --------->YAB1   <---------YAB1 --------->YAB1 <--------HAHB4                                                                          ------>ZmHOX2a(1) <---------ICU4                                                      <---------ATHB12   --------->TOE1(2) -------->ATHB1                                                    <---------GLK1(1)<---------ZAT2 ---------ATHB12                                                   --------->GLK1(1)<---------At4g35610 -------->ICU4 --------->ICU4                <-------TEIL        <------ZmHOX2a(1) <---------ATERF1(1) ------>WOX13(1)                       ---------->DOF2      ------------------------>ANAC81--------->ANAC46 -DOF2<---------YAB1             <-----------RAV1(1)       ---------->DOF2   ---------->DOF2   caatcattataaaagtattgatttttatgtgtgttttgtggcaaaggtacttaaacaatgggaaagaggaaatcaagagcaaagcctgctcctacgaagc  18687800  Previous    Next  AGI:  At5g46030.1    Description:  Identical to Transcription elongation factor 1 homolog [Arabidopsis Thaliana] (GB:Q8LEF3;GB:Q9FNL9); similar to Os07g0631100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060360.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39351.1); contains InterPro domain Protein of unknown function DUF701, zinc-binding putative (InterPro:IPR007808) Range:  from: 18687344    to: 18688600    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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