Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                                                 ----                                                                                                 <---                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                <----                      <---------ANAC46                                                         <-----                      <---------ANAC55(2)                                                   <--------                     --------->MYB52(2)                                                    --------->YAB1                 <---------ICU4                                                        ------->GAMYB                 --------->YAB1                                                       --------->MYB46(3)      <---------AHL20(2)                              --------->AHL20(2)             --------->ANAC46     --------->ICU4<---------MYB52(1)             <---------TOE2(3)                  --------->ANAC58 ---------->GT1 <---------ATHB12             --------------->AGL15                   --------->ANAC58 -------->YAB1 ------>MYB83                  ======================================================== --->AHL20(2)  ------>MYB46(1)            <-----------GT1      --------->ZAT18     --------->MYB46(3) >AHL20(2)<-----------GT1              --------->AHL20(2)    --------->At4g35610   --------->REM1(1) >YAB1--------->AHL20(2)               <---------AHL20(2)    --------->ZAT2--------->ARR14(2) <------   aatcgtaattttttaccaatcgttacttatatatcaactattttattccatttagattaaacaagctcacaattccaaaactgctacaaccaagaataac  18681700            --------->ANAC46            --------->ANAC58            --------->ANAC58            <---------ANAC55(2)       --------->WOX13(1)     <---------ZAT18 <---------ICU4 <---------HSFB2a(1) ------>WOX13(1)--------->HSFB2a(1) ----------->AGL15 ------------AGL15 ------------>AGL1 -------------AG--------->HSFC1(2) ------------>AGL3 ------------>AG<---------HSFC1(2)                                               <---------ANAC58 -------------AGL2                                                               <---------ANAC58 ------------>AGL2                                                             --------->AHL20(2) -------------AGL1                                                          <---------ICU4 ------------AGL1                    --------->ATHB12                    --------->YAB1          ---- -KAN4(2) --------->YAB1           <---------WOX13(1)               <---------MYB52(2)          ----- ============MADS_MADS          <---------YAB1                      --------->MYB46(3)        <------ -----GT1<---------ATHB12--------->AHL20(2)                       --------->MYB52(1)          -------   caattagggcaatcacgaaaattccaaaaaaatcaagattgatttcaaatcgaactcaaaaatcagagcaacgaatcaaaattacttacgaatatcagca  18681800                        <------MYB83                       <---------AtMYB61                       --------->MYB59                      <--------P                      <---------MYB55(1)                     <---------MYB52(1)                    <---------DEAR3(2)                    <---------RAP2.6(3)                   <---------MYB46(3)                   <---------ATERF1(2)                   --------->ATERF1(2)                  <---------ORA47(1)               --------->WRKY38(1)            <---------DEAR3(1)                                                         ---------->DOF2       --------->ARR14(2)                                                             --------->LBD16       <---------ARR14(2)                                                            <---------HSFB2a(2)       --------->GLK1(2)<------MYB46(1)                                              --------->HSFB2a(2)      <---------GLK1(2)--------->MYB111(1)                                     <---------DAG2 ----->At4g35610  <---------ANAC46                                             <----------DOF2 ------>RAV1(1)--------->WRKY12                                             ------>MYB83 ---At4g35610 --------->ATERF1(1)                                           ------>MYB46(1) -->At4g35610<-------GAMYB                      >>>>>>>>>>>>>>>>>LFY      <---------MYB59   gcactagagaatcggcgttggccggtaggtttacccttgaacttgcctcttcccattgtttcaaacaaaaaaaaaaccaaactttttccgaaagagagag  18681900                 --------->ANAC46                 --------->ANAC58                 --------->ANAC58                 <---------DOF5.7(2)          <----------ID1                          --------->MYB52(1)                 <---------DAG2          ----------->GT1                 ------->TEIL ------->TEIL                  <----------DOF2   <---------ATHB12          --------->GLK1(2)--------->LBD16              ---------->DOF2   aacaaatcaaaaacgaaaaacgaaaccagagaatttgatacttgaacccagataacgaatcgattcgaaaacgaataaaaagatgagctttttgtgaaat  18682000                                                          --------->ZAT2                                                          <---------TGA1a               ------>ZmHOX2a(1)                          --------->TGA1a            ---------->ID1               --------->ANAC58 <---------ZAT2        ==============HOX2a_HOX2a        --------->ANAC58 ==============================bZIP_DOF        ------>ZmHOX2a(2)               <-----------------------TaNAC69(2)       ===============HOX2a_HOX2a ==================================bZIP_DOF       <------ZmHOX2a(2)          ---------->DOF2         ==============================bZIP_DOF      <---------AGP1 <---------LBD16   --------->CCA1(2)  ----------->RAV1(2)          --------->ALFIN1      --------->ARR14(2)        ----------->HVH21         --------->O2           <----------DOF2      <---------ARR14(2)    <---------ANAC46              <---------O2    --------->GLK1(2)      <---------ARR14(3)    <---------ANAC55(1)          ------>NtERF2   --------->ARR14(2)      --------->GLK1(2)     <---------ANAC58         --------->ANAC58    <---------ARR14(2)        <-      <---------ARR11(3)    <---------ANAC58       =================bZIP_DOF <----------DOF2     <---      --------->ARR11(3)    <---------YAB1         ---------->DOF2       <---------GLK1(2)      <----      <-----------ARR10  --------->ARR14(2)     --------->TOE2(3)--------->ARR14(2)  <---------ANAC58      --------->ARR14(3) <---------ARR14(2)     --------->TOE1(3)<---------ARR14(2)  <---------ANAC58     <------ZmHOX2a(1) --------->LBD16<----------ID1 --------->ANAC58<---------LBD16 <---------ANAC46   tagtggaggatcttgtcctctcttccggttacgagtgaaagagacgaaaaccctaaagccacctgtggatttggggattctttctttgagtgtggatttt  18682100                                                                                                   --                              <---------AHL20(2)                                              -------                             --------->AHL20(2)                                         --------->ARR14(2)                      --------->ZAT14                                                   <---------ARR14(2)  <---------YAB1      <---------ZAT18                                      <---------------AGL15 <--- *TSS    ------>ZmHOX2a(1)  ----------->TBP              --------->At5g28300      ----------->GT1<--- <---------AHL20(2)   <---------ZAT14                --------->MYB52(1)    ========================== --------YAB1       --------------->AtSPL8           ------------>MYB.PH3(1)--------->At5g28300------ ------AHL20(2)  <---------LBD16                  <------ZmHOX2a(2)        --------------->AGL15 ---- -----YAB1      <---------ANAC46    --------->At4g35610 ----------->GT1   <-----------------AGL2 <---   tatttttattcctctgtttcgcggtgtactataaaatcatctcaacttatagatcaaacggttactaactcgttttgctgtaaatggtcaaatacgacga  18682200                                                 <------NtERF2                                                 --------->ATERF1(1)                                                <-----------HVH21                                               --------->DEAR3(1)                                               --------->O2                                               <---------O2                                               <---------DEAR3(1)                       --------->YAB1         --------->ATERF1(1)            <---------ZAT18                   <------NtERF2 ------->ALFIN1   <----------DOF2            ------>NtERF2 -->DEAR3(1)--------->ZAT14   <----------ID1 <---------ATERF1(1) ------ANAC46   --------------->AGL15        <-----------HVH21 ------bZIP60(2)<---------------AGL15       --------->DEAR3(1) ===============================MADS_MADS   <---------ANAC46 >NtERF2    --------->ZAT18---------->DOF2  <---------DEAR3(1)         ---------->DOF2 ----->O2 --------------->AtSPL8       --------->MYB52(1)          --------->ANAC46  <---------GLK1(1) ------O2 --------------->AtSPL3     ---------->DOF2<------NtERF2  <----------ID1    --------->GLK1(1)   cgtgtttcgataagcgtactctttatcgtaaaagaacaaaaaaacggcgtcgtcgcggtccaagtttataggccaaagctgttttgggtttccacaataa  18682300               <--------P            <---------TOE2(3)            <---------TOE1(3)                                   <---------YAB1           <---------ANAC46                                   <---------ICU4     <---------TOE1(3)                              <-------TEIL--------->ICU4     <---------TOE2(3)                             --------->CCA1(2)       <---------ATHB12   ---------->DOF2    ----------->GT1              --------->GLK1(2) <-----------GT1          <------   cttggtaaaggtttagggtaagttaagttatattgatggtattgtatagagagattcaagaaaatcatttttaacaaatcaaggcaattgatgagtttca  18682400                                                                                                 <---                                                                                               ------                                                                                               <-----                                                                                        <-----------HVH21                                                                                       <---------TGA1a                                                                                       --------->TGA1a                                                                                       <---------O2                                                                               <---------ICU4 -------                                                                              --------->ICU4  <------                          <---------AHL20(1)                                  <---------YAB1<--------                          <---------AHL20(2)                                <---------ICU4  <--------                          --------->AHL20(1)                                --------->YAB1  ---------              --------->TOE2(3)   --------->YAB1           ======================================bZIP_DOF  <---------TOE1(3)  --------->ARR11(3)                ==========================================MYC_MYB  <---------TOE2(3)  <---------ARR11(3)     ---------->DOF2---------->DOF2 --------->ICU4----------->HVH21 ---------->DOF2    --------->YAB1<---------ICU4       ------->GAMYB       <---------ATHB12 --------- -TEIL       --------->YAB1    --------->YAB1    <---------REM1(1)  <------ZmHOX2a(1)  --------->O2   ttttaaagttgtcaaacataaatgatattatattgatcatcacaaacaaagttgtaaccgaaaaagaagaggatgaaatcatcatggactcgtgacatca  18682500     ------>ZmHOX2a(2)    <------ZmHOX2a(2)    --------->CCA1(2)   <---------AGP1   <---------ARR14(2)   <---------ARR11(3)   --------->ARR14(2)   --------->AGP1   --------->ARR11(3)  <---------CCA1(2) ------YAB1                                           <---------At4g35610 --->ATHB12                                   <---------bZIP60(1) ----ICU4                                    <------NtERF2 -->ICU4                                 <---------MYB46(3) ---YAB1                                 --------->MYB52(2) -bZIP60(1)                              <------MYB83 --------->At4g35610 -TGA2(1)                                <------MYB46(1)                        <-----------GT1 >TGA2(1)                               <---------DEAR3(1)               ---------->DOF2 >bZIP60(1)                             <---------AtMYB61          <---------ATHB12<----------DOF2 <-   ttgtagatctgagtcaaaacatttgtgaaacattcttcgacgttggtggcatcaagagctgatgtttcaatgaataaaagtttttctttctctgcgaaag  18682600  Previous    Next  AGI:  At5g46020.1    Description:  similar to unknown [Populus trichocarpa] (GB:ABK93798.1); contains domain PTHR22055 (PTHR22055) Range:  from: 18680073    to: 18682101    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g46025.1    Description:  Ras-related GTP-binding family protein. similar to AtRABA1e (Arabidopsis Rab GTPase homolog A1e), GTP binding [Arabidopsis thaliana] (TAIR:AT4G18430.1); similar to RAB11B, member RAS oncogene family [Homo sapiens] (GB:AAV38342.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753) Range:  from: 18682482    to: 18682823    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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