Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    <---------TOE2(3)                <---------AHL20(2)                                           --------->AHL20(1)          <---------DAG2                                       <----------DOF2          <----------DOF2                                   <-----------GT1  --------->ARR11(3)     <---------At5g28300                 <-------TEIL       <---------AHL20(2)     <---------ANAC58    <-----------GT1       >>>>>>>>>>>>>>>>>LFY   <---------ZAT18   <----------DOF2 <---------ANAC58 -   attaagttacagctttatttaagtttgtttccaatgtaatatgttcatttgtgcatttctattttctttcttttctgaatatatagcttatctagtatgt  18668200                                                                  <-------TEIL                                                               <---------RVE1(1)                                              --------->YAB1  --------->ARR14(2)                                           --------->YAB1     <---------ARR11(3)                                         <-----------GT1      --------->ARR11(3)                <----------DOF2      --------->AHL20(1)       <---------ARR14(3)        --------->TOE2(3)          <---------AHL20(1) ---------->DOF2                        <-------       ----------->GT1            --------->YAB1<---------YAB1--------->ARR14(3)    <---------AHL20(2) --------->AHL20(2)            --------->YAB1<---------YAB1   <---------ARR14(2)   --------->AHL20(2) -------->AHL20(2) --------->AHL20(2)<---------AHL20(1)     ----------->ARR10      <---------AHL20(2)   cattaaaaaatgttaattcttttatatatgtattcataatatttttcattataaaaaaaaggaagatattcattcatgtgagaaaataaatgggccattg  18668300                                                                                   ----------->RAV1(2)                                                                                 --------->ARR11(3)                                                                                --------->GLK1(1)                                                                                <---------GLK1(1)                                                                               <---------ARR11(3)                                                                       --------->ICU4        >>>>>>>>                                                          --------->LBD16<------------CBF <---------MYB59  <---------TOE1(2) <----------DOF2                       ------>ZmHOX2a(1)    --------->ARR11(3) ------>ZmHOX2a(1)  <---------DAG2                      ----------->RAV1(2)  <---------TOE2(3) -----CBF   <----------DOF2      --------->TOE2(3)<------------CBF  ------------>CBF ------>ZmHOX2a(1)   ctcctagttttgggcttttgggctttttcttagtttcttaatgtgtttgggccattgctcctggttttgggccaatattgagatatcctgagcctaactt  18668400                                                                                                   --                                                               <--------HAHB4                     <--                                        <-----------GT1        <---------ICU4            <---------HSFB2a(2)                                    ------->TEIL              <---------ATHB12           --------->HSFB2a(2)                                 -------------->OsCBT       --------->WOX13(1)        --------->ARR11(3)                               <---------ANAC58           ------------>CBF            <---------ARR11(3) --------->MYB59               <---------ANAC46 --------->ZAT14--------->YAB1         --------->GLK1(2) >MYB98   --------->YAB1       <---------ANAC58<XXXXXXXXXXXXXXXXXXXXXMIR2936       <---------------AGL15   atttaggcccattaagaacccattctattttgtgcgtgtatgttacgctgtgttctctcgttcaatcattttcttctctcatttccaaaatctagaaacc  18668500                             ------>NtERF2                            <---------ETT(2)                            ----------->HVH21                            --------->ETT(2)                            --------->DEAR3(1)                           --------->ATERF1(1)                          ------>NtERF2                          --------->LBD16                                                    --------                          <---------ATERF1(1)                                               <--------                         <---------DEAR3(1)                                               --------->LBD16                        <---------LBD16                                                 <---------LBD16                        --------->SPL7   ----------->GT1                            <---------DEAR3(1)                        --------->ATERF1(1)                                         ----------->HVH21                       <---------ATERF1(1)         <---------LBD16              --------->ANAC58            <---------ARR11(3)    <---------MYB52(1)          --------->At4g35610  --------->SPL7            --------->ARR11(3)   --------->At5g28300<---------LBD16             --------->ANAC58       --------->DAG2 <---------SPL7     <------MYB83--------->LBD16            --------->ANAC46      ---------->DOF2<---------ANAC58    <------MYB46(1)    --------->ARR11(3) --------->LBD16 -------->DOF2------>ZmHOX2a(2) ----------->GT1 ----------->HVH21     ---------->DOF2   ------>NtERF2 -------STY1(1)      <---------ANAC58   --------->MYB59 ---------->DOF2        <---------LBD16   ctagagcaaaaagtgatctcatggcctccggcgaccgtaaatttggttatatgaccgggaaagatgctgaagtaaagcttccacggacgacgcgggtcaa  18668600                                                                          <------ZmHOX2a(2)                                                                         --------->ARR11(3)                                                                         <---------ARR14(2)             <---------ZAT2                                              --------->AGP1             <---------At4g35610                                         <---------ARR11(3)             --------->At4g35610                                         --------->ARR14(2)             ----------->RAV1(2)                                        --------->GLK1(1)           <---------ALFIN1                                             <---------GLK1(1)          <------NtERF2                                                ----------->ARR10         ------>NtERF2                                             --------->ZAT2         <-----------HVH21                                         --------->At4g35610         <---------ATERF1(1)                                       <---------At4g35610   ----------->GT1        --------->LBD16                                        --------->ANAC58   --------->ANAC46        --------->ANAC46                                       --------->ANAC58 <---------ALFIN1       <---------LBD16 <---------ATHB12                    --------->ANAC58<-------TEIL--------->At4g35610 ->WRKY18(1)------>NtERF2   <---------ZAT14                --------->ANAC58------>ZmHOX2a(2) ---HVH21--------->LBD16    --------->ZAT14     --------->GLK1(2) --------->GLK1(2)--------->AtMYB61   gaacaagaccccggcacctgtgcaaatcactgcagagcaaattctaagagaagctcgagagaggcaagaagctgagatccgtccacctaagcagaaaatc  18668700                                                             <-----------HVH21                                       ---------->DOF2     ------>ZmHOX2a(2)                                 =================bZIP_DOF <-------TEIL                                 <---------O2             <------ZmHOX2a(2)                                 --------->TGA1a         <---------GLK1(2)                                 <---------bZIP60(1)     <---------ARR14(2)                                 --------->bZIP60(1)     <---------ARR11(3)                                 --------->O2            --------->ARR14(2)             ==============================bZIP_DOF      --------->AGP1             <----------DOF2     <---------TGA1a       ----------->ARR10           <---------At4g35610 ------>NtERF2       <------ZmHOX2a(1)                           <-----           --------->At4g35610--------->DEAR3(1)   ===============HOX2a_HOX2a                  ------ <---------GLK1(2)            ----------->HVH21    ==============HOX2a_HOX2a              <----------   actgattctactgagctttccgattacagactccgacgtcggaaagagtttgaggaccagatccgtcgagcgagatggaacatccaagtttgggtcaaat  18668800                                           <---------ANAC46                                           <---------ANAC58                                     <---------HSFB2a(2)                                     --------->HSFB2a(2)                                 ------->MYC3                                 <-------MYC2                                 ------->MYC2                                 ------->MYC4                                 ------->PIF5                                 <-------MYC4                                 <-------PIF5                                 <-------MYC3                                 <-------PIF4                                 ------->PIF4                                <---------TGA1a           <---------HSFB2a(1)  =====================================bZIP_DOF     --------->ALFIN1           --------->TGA1a   <---------O2                ------------>OsbHLH66                                --------->ANAC58-   <---------TGA1a             ------->TEIL<---------ANAC58             <---------ZAT14            --   --------->O2               <------------OsbHLH66                   <---------ZAT14  <----------DOF2 ----ARR14(2)               --------->ANAC58              <----------DOF2   <------ZmHOX2a(1)-------- --->ARR14(2)               --------->ANAC46   --------->ALFIN1     <---------------AtSPL8  <-------- -HVH21   ----------->ARR10 --------->ANAC58 --------->ALFIN1     <------ZmHOX2a(1) --------->ANAC58-   atgcgaagtgggaagagtcgcaaatggactacgcacgtgctcgaagcgtgtgggaacgagctttagaaggagagtacaggaaccatacgctttgggtcaa  18668900                                                       <---------HSFB2a(1)                                                       ------>ZmHOX2a(2)                                                       --------->HSFB2a(1)                                             <---------HSFB2a(1) -------->ANAC58                             --------->HSFB2a(1) ------->ZAT18                           <---------MYB52(2) ->WRKY18(1)<---------At4g35610         --------->ANAC58                                          --- ---HVH21   --------->At4g35610         --------->ANAC46                                 <----------DOF2 -------->ANAC58                        --------->ANAC58      <---------MYB52(1)       --------->At4g35610   gtacgcagagtttgagatgaagaacaagtttgtcaacaatgcaaggaacgtttgggatcgttctgttacgcttctccctcgagttgatcagctttgggag  18669000                                                             <---------MYB46(3)                                                            --------->ALFIN1                                                         <---------DEAR3(1)                                                  ------>ZmHOX2a(2)                                                 <------ZmHOX2a(2)                                                --------->ARR11(3)                                                <---------GLK1(2)                                                <---------ARR11(3)                      <---------ANAC58                     <---------ANAC58           --------->AGP1                       --------->DAG2                     <---------ANAC58           <---------ARR14(3)                  ---------->DOF2                    --------->HSFC1(2)          --------->ARR14(3)              <------ZmHOX2a(2)                    <---------HSFC1(2)          <-----------ARR10              <---------ARR11(3)        <---------AtLEC2                        <---------ARR14(2)             --------->AGP1       <      <---------AHL20(2)                        --------->ARR14(2)         <---------At4g35610      - -------->GT1      --------->GLK1(2)          ----------->ARR10        <-----------HVH21<---------ANAC58   aagtatatttacatggaagagaagcttgggaatgttactggagctagacagatcttcgagcggtggatgaactggtcaccagatcaaaaagcttggctct  18669100  Previous    Next  AGI:  At5g45990.1    Description:  crooked neck protein, putative / cell cycle protein, putative. similar to crooked neck protein, putative / cell cycle protein, putative [Arabidopsis thaliana] (TAIR:AT3G13210.1); similar to crooked neck protein, putative / cell cycle protein, putative [Arabidopsis thaliana] (TAIR:AT5G41770.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ82520.1); similar to hypothetical protein OsI_018611 [Oryza sativa (indica cultivar-group)] (GB:EAY97378.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81550.1); contains InterPro domain RNA-processing protein, HAT helix; (InterPro:IPR003107); contains InterPro domain Range:  from: 18668551    to: 18671119    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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