Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                <---------At4g35610                                              --------->LBD16                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                            xxxxxxxxxxxxxxxx>smallRNA(i)                                         xxxxxxxxxxxxxxxx>smallRNA(s)                                        xxxxxxxxxxxxxxxx>smallRNA(i)                                        xxxxxxxxxxxxxxxx>smallRNA(s)                                        --------->At4g35610                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                      --------->YAB1                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                     <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                     <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                    <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                   ------->GAMYB                                   --------->YAB1                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                  --------->MYB46(3)                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                 -------->Pxxxxxxxxxxxxxxxx>smallRNA(i)                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                               xxxxxxxxxxxxxxxx>smallRNA(i)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                               <xxxxxxxxxxxxxxxxxsmallRNA(si3)                               --------->MYB46(3)                              <---------ATHB12--------->At4g35610                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                  xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxx>smallRNA(i)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                <xx           ----------->GT1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  ----- ------RVE1(1)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     ---------->DOF2      <----- -----GLK1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) xxxxxxxxxxxxxxxx>smallRNA(i)             ---------- ---->ARR11(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              ----------->GT1     --------->DAG2 -----ARR11(3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)              ---------->DOF2      xxxxxxxxxxxxxxx ---AtSPL8<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(i)           ---------->DOF2   tttttaaaccaagttgtaattctagcaaacccatcaaccatcatcttccgctggattttgtgttttctaaagaaaaaaaagagatagaaaaaggaaagag  18644800                                                                             <---------AHL20(2)                                                                         ----------->GT1                                                                      --------->DAG2                                                                <---------ANAC46   <---------ANAC55(2)                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      ---------->DOF2              ---------->DOF2   ---------->DOF2      <---------AHL20(1)                     <---------AHL20(2)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------ARR11(3)                     --------->AHL20(2)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->AHL20(1)                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        <---------ANAC58   --------->ANAC55(2)           --------->MYB46(3)                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     --------->ARR11(3)    <xxxxxxxxxxxxxxxxsmallRNA(i)                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <---------AHL20(2)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        --------->AtLEC2<---------ANAC58   --------->ANAC58 xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  --------->ANAC55(1) ---->CCA1(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->ICU4 -----ID1  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->ANAC46 >DOF2   <-----------GT1   --------->At5g28300xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ANAC58 - xxxxxxxx>smallRNA(si3)   ----------->GT1 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     ----------->GT1 --   acaagagattgtaaccgatgtaattaaagggtaaataagtcaaattgtccatacaaagtgcctattccttgaaaagtgtttaatcacgtaaatattttta  18644900                                                                      ----------->GT1             ----------->GT1                                         --------->DAG2     ----------->GT1         <---------ZAT14                                           ---------->DOF2     <------NtERF2         <---------REM1(2)                                       <---------ANAC55(2)  ------>NtERF2         --------->ZAT14       <---------AHL20(2)   --------->bZIP60(1)       <------MYB46(1)    --------->ZAT18         <---------AHL20(2)      --------->O2 --------->ANAC55(2) --------->DEAR3(1)    --------->ZAT14         --------->AHL20(2)      <---------bZIP60(1)       <------MYB83    <---------ZAT18        <---------AHL20(2)       <---------O2 <---------YAB1      <---------DEAR3(1)    <---------ZAT14        --------->AHL20(2)    --------->ANAC46--------->ANAC58 <---------DEAR3(1) -------->DAG2         <---------YAB1      --------->AHL20(2)    --------->ANAC58--------->SPL7 -------->DOF2--------->At5g28300      <---------ATHB12<---------ANAC46      --------->MYB59   aaaaagtgctctacactgtaatattctcattaatttatccaataactaaatacgacgtcgtttagttacgaaaggtaatttggttcggcgtcgttacaaa  18645000                                                                                                 ----                     <------------MYB.PH3(1)               <---------ARR11(3)                    ----                   ------->TEIL                     ------>MYB46(1)                            ------               ------->TEIL                         ------>MYB83                               <-----       <-------TEIL<-----------GT1                <---------MYB59                      <---------ARR14(2)      --------->CCA1(2)                           --------->AtMYB61                    --------->ARR14(2)     <---------GLK1(2)        <-----------GT1   >>>>>>>>>>MYB80--------->ZAT14   <-----------GT1 ----   gactaaagattcacatgaatgtaactgttttttatccatatcaattttcaaaccaaaccaagaactgaactcgaaccattttttatccaaatccaaacca  18645100                     --------->ANAC58                     --------->ANAC46                     --------->ANAC58                                   --------->ICU4       <-------       --------->AHL20(2)                                        -------->HAHB4        --------->AHL20(2)       <---------AHL20(2)                                       <---------YAB1         <---------AHL20(2)      <---------AHL20(1)                                      --------->YAB1       <---------AHL20(2)      --------->AHL20(1)                                     <---------YAB1 <---------AHL20(2)      --------->AHL20(2)                                     <---------AHL20(2)    --------->ICU4      <---------AHL20(2)                                    <---------AHL20(2)     <---------ATHB51 -->MYB83          ---------->DOF2          <-----------------AGL1  ------------>CBF<---------ICU4 -->MYB46(1)      ------>MYB46(1)          <-----------GT1  --------->AHL20(2)     --------->AHL20(2) --->AtMYB61      -------->P--------->AHL20(2)              --------->AHL20(1)  --------->AHL20(2) ----MYB59        ------>MYB83 --------->ARR11(3)           <---------AHL20(1)  <---------AHL20(2) ----->MYB52(1) <---------MYB59<---------AHL20(1)<------------CBF--------->YAB1--------->AHL20(2)   aaccgaaatttaattggacctacaagcccattatatattcaaattttacaaaattggcataatataataatacaatgtttaataaataattaaactaaac  18645200                      =====================HOX2a_HOX2a                      <------ZmHOX2a(2)                     --------->ARR14(2)                     --------->ARR11(3)                 <-----------GT1                --------->TOE1(2)                --------->TOE2(2)              <-----------ARR10              <---------ARR14(2)                                <---------HSFB2a(2)              --------->GLK1(2)                                 --------->HSFB2a(2)              --------->ARR11(3)                            <---------GLK1(2)              --------->ARR14(2)                            --------->ARR14(2)              <---------ARR11(3)    ------>ZmHOX2a(1)       <---------ARR14(2)              <--------         ----------->GT1          *TSS                 --------->MYB52(1)                   ---------   ---------->DOF2   <---------ARR14(2)         ----------->RAV1(1)     ---------->DOF2     --------- --ZAT14----------->GT1  ------>ZmHOX2a(1)  --------->MYB46(3)  <---------HSFC1(1)    ----------->GT1   tgagtaaaagagggaaaatctacgatcctctctatctccttatccaacaacaacaaaaaacgaattctcgaagagaaagacactgaaatcgaaaaatcta  18645300                                        ------>ZmHOX2a(2)                                       <---------GLK1(1)                                       --------->GLK1(1)                                       <------ZmHOX2a(2)                                      --------->ARR14(2)                                      <---------ARR11(3)                                      --------->ARR11(3)                                      <---------ARR14(3)                                    ----------->ARR10        ------>MYB46(1)                               --------->HSFB2a(2)        ----------->RAV1(2)                         <-----------ARR10                <---------ANAC58     --------->ZAT18    <---------CCA1(2)   ------>ZmHOX2a(1)------>MYB83     <---------ZAT18    <------NtERF2 <-----------ARR10   <---------ANAC58   <---------At4g35610<---------ANAC58--------->ARR14(3)  --------->At4g35610            <---------ARR11(3)   --------->At4g35610<---------ANAC58<---------AGP1      <---------At4g35610       ------>ZmHOX2a(1) -ARR11(3)            <---------ANAC46<---------ARR14(2)<---------WRKY18(1)        --------->TOE2(3) >ARR11(3)    --------->ANAC58 <---------HSFB2a(2)   <---------ICU4             ------>ZmHOX2a(1) <-- >GLK1(2)     --------->ANAC58 <---------LBD16       --------->YAB1   <---------CCA1(2)  --------->ARR11(3)   tagagagctcactcactagcaatggcgtctcttctcggaagatctccttcttcaatcttgacctgccctcgtatttcttctccttcctcaacatcttcaa  18645400                                                --------->TOE2(3)                                           <---------MYB52(2)                                           --------->MYB46(3)                                          >>>>>>>>>MYB98         --------->At4g35610          --------->TOE2(3)                <---------At4g35610         <---------At4g35610    <----------DOF2 --------->TOE1(3)      --------->At4g35610    <---------CCA1(2)  <-------TEIL<-----------GT1  ---------->DOF2 <---------At4g35610          ---- ---------HVH21   <-----------RAV1(2) --------->TOE1(3)            <-----------GT1              <----   tgtcccatctctgcttcggaccaggttcgaaactcttttaccctaacaaacctcaaaagtacccatttttatctgctcatacacttgttgacatttcaat  18645500                                         --------->GLK1(2)                                       <---------HSFC1(2)            ------>ZmHOX2a(2)                                       --------->HSFB2a(1)          --------->GLK1(1)                                       --------->HSFC1(2)           <------ZmHOX2a(2)                                       <---------HSFB2a(1)         <---------ARR11(3)                                  <---------HSFC1(1)               <---------ARR14(2)            ---------->ID1        --------->HSFC1(1)               --------->ARR14(2)          --------->MYB52(2)      --------->HSFB2a(2)              --------->AGP1          <---------MYB46(3)      <---------HSFB2a(2)              <---------AGP1            ------->TEIL ----->YAB1<-------GAMYB         <---------LBD16                   --------->ARR11(3)     <---------YAB1 -----ATHB12<---------MYB52(1)<----------DOF2          ---------->DOF2                 <---------MYB52(1)   gaaaatgtgtgttcgttgtttttgcagagaaactttctggaagaatccaattcaatccaaagaagaacagatctcgttaccatgtctctgttatgaatgt  18645600                                                                                                -----                                                                                              <------                                                           --------->ATHB12                 <--------        <------ZmHOX2a(2)                                 <---------AHL20(2)            --------->ATHB12       --------->ARR11(3)                             <---------AHL20(2)                <---------AHL20(2)       <---------ARR11(3)                           --------->ANAC55(2)                <---------AHL20(2)      --------->GLK1(1)                       <---------YAB1             ------->TEIL  --------->AHL20(2) --------->ZAT14                         <---------ICU4  <---------WOX13(1)         --------->ATHB12 <---------ZAT14<-------GAMYB     <----------DOF2<-------TEIL   ---------->DOF2    --------->ICU4   cgctacagagatcaactctgttgaacaagtatgagtcttttcaacattatgttcatgtaattgattaaaagcttgaacctttggaatgatttattggtta  18645700  Previous    Next  AGI:  At5g45930.1    Description:  CHLI2; magnesium chelatase. similar to CHLI1 (CHLORINA 42), magnesium chelatase [Arabidopsis thaliana] (TAIR:AT4G18480.1); similar to unknown [Populus trichocarpa] (GB:ABK95697.1); contains InterPro domain Magnesium chelatase ATPase subunit I; (InterPro:IPR011775); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain Magnesium chelatase, ChlI subunit; (InterPro:IPR000523) Range:  from: 18645234    to: 18646924    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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