Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          <---------HSFB2a(2)        --------->HSFB2a(2)  <---------AHL20(2) --------->AHL20(2) <---------AHL20(2)                                       <---------AHL20(2) ----->AHL20(1)              <---------HSFC1(1)           --------->AHL20(2) ------AHL20(1)              --------->HSFB2a(2)     <---------TOE2(3) ----->AHL20(2)              --------->HSFC1(1)     <-----------GT1                             ----- ------AHL20(2)              <---------HSFB2a(2)   <-----------GT1                          --------- --AHL20(2)            <---------TOE2(3)      <---------AHL20(2)                            --------- ->AHL20(2)    >>>>>>>>>GATA-1               <---------AHL20(2)                             <-------- >AHL20(2)   ----------->GT1<---------LBD16  --------->AHL20(2)                         --------->YAB1   ttattaatttctagatagataaactatggttctggaactacatgaaattttttttaacatttaaaaaaaaactacatgaaaatttagcaaggagaatatg  18625700                                        ---------->DOF2                             <---------ANAC46                --------->DAG2                             <---------ANAC58              ---------->DOF2                             <---------ANAC58      --------->ANAC58                        <----------DOF2<---------ICU4    --------->YAB1   <-----------GT1    <---------At4g35610          --------->ANAC58               ---------->DOF2 ------>GT1      <---------ANAC55(2)  <---------YAB1    <---------ATHB12        <---------YAB1 >GLK1(2)       <-------TEIL<---------MYB46(3) <---------ALFIN1              --------->AHL20(2) >ARR14(2)    --------->ARR14(2)    --------->YAB1 --------->ANAC46          <---------AHL20(2) -ARR14(2)    <---------ARR14(2)<-------TEIL ----------->RAV1(1)      <----------DOF2   gaaatttacatttgcaaatacgtctgctattgggtgcatcataaatgccacactcgcaatgaaaagggtattctttgattttattaaagcctcttatgca  18625800                 --------->ANAC46                 ----------->RAV1(1)                --------->MYB46(3)                <---------MYB55(2)               --------->ANAC58               --------->ANAC58              --------->ANAC46             <---------ALFIN1           --------->SPL7         <-----------HVH21                 <----------DOF2        <---------ANAC58                  <---------DAG2        <---------ANAC58                  <----------DOF2       --------------->AtSPL3      <---------ANAC58        --------->ZAT14                <----------     <-----------GT1               <---------ANAC58<---------ALFIN1              <---------ALFIN1   agttttgtttccgtcccacccacaattttgttcgaatacttgtgccttttcgcacaccttcttcactctcttggccttagtctccaccgatttcacctct  18625900                                                                            <---------AHL20(1)                                                                            --------->AHL20(1)                                                                        <---------AHL20(2)                                                                       --------->AHL20(2)                                                                   <---------YAB1                   <---------ATHB12                              <---------ICU4                 --------->WOX13(1)         ----------->GT1      -------->HAHB4               <---------YAB1             <---------ICU4         --------->YAB1             <-----------GT1     ----------->RAV1(1)            <---------YAB1           <---------AHL20(2) --------->ANAC58              --------->AHL20(1)         <---------YAB1       --------->ANAC58              <---------AHL20(2)       <---------AHL20(2)     --------->ANAC46   --------->ICU4 --------->ICU4   <---------AHL20(2)  <---------MYB52(1)--------->YAB1      --------->AHL20(1)  --------->AHL20(2) <---------AHL20(2) -GT1 <---------AHL20(2)   <-------TEIL--------->YAB1----------->GT1--------->AHL20(2) --------->YAB1   attcgttttttatttttatcaatcatacatacacacaacaaaaataatgtcaaaattgtaaataaaatgattatttaatatataaaaattgataatgcag  18626000                                                                            ----------->HVH21                                                                           ------->MYC3                                                                          --------->TGA1a                                                                          <---------ANAC55(2)                                                                          --------->ANAC58                                                                          --------->ANAC58                                                                          --------->O2                                                                          --------->ANAC46                                                                          --------->ANAC55(2)                                                                          <---------TGA1a                                                                  ------->TEIL                                                               <---------ANAC55(1)                                                               <---------ANAC58                                                               --------->ANAC55(2)                                                               <---------ANAC55(2)                                                               <---------ANAC58                                                              --------------->AtSPL8                                                              --------------->AtSPL3                                                       --------->ZAT18    --------->bZIP60(1)                                                       <---------ZAT14    <---------O2                                                       --------->ZAT14  <-------------DYT1                          <---------ARR14(2)           <---------ZAT18 ----------->HVH21                          --------->ARR14(2)          <---------ZAT6  <-----------HVH21                     --------->TOE1(2)    ---------->DOF2     <---------------AtSPL3             <----------DOF2      --------->TOE2(3)  <---------------AtSPL8<-------MYC3           ---------->ID1<------ZmHOX2a(1)==========================================bZIP_DOF   taagtttttttttgtcttttaaaccgaggatactaatctaaatcgaaagaacaatagtgtacattacgtacctctcacgtgactaagaacacaaaatatg  18626100                                          <---------------AGL15                                          --------------->AGL15                                         <-----------------AGL1                                         <-----------------AG                                   --------->ATHB12     --------->ANAC58             <---------YAB1     ---------->DOF2  <-----------GT1     --------->ANAC58             --------->ICU4 ----------->GT1 <----------DOF2               <-----     --------->ANAC46     <---------ZAT18============================================================   agaacacaagaaaccatgaacaaggtagtagacttcatgatttaacaaaaatggtaaaagctactgtctttgttacctctctcttgtaacaagtgtgtta  18626200                                                                                              ------>ZmHOX2a(2)                                                                                             <------ZmHOX2a(2)                        <---------------AGL15                                                --------                     --------->ANAC58                                                       <--------                     --------->ANAC46                                                       ---------                     --------->ANAC58                                                       ---------                     <---------ALFIN1                                                       <--------                   <---------ALFIN1                                                         <--------             --------->HSFC1(2)                                                             ---------             <---------HSFC1(2)       --------->AHL20(2)                                   <---------CCA1(2)         ------->GAMYB ----------------->AGL3                                          -------->P       <---------LBD16 ----------------->AGL2                                         --------->WOX13(1)      --------->MYB52(1)--------------->AGL15                   <----------ID1       <---------WRKY12      <---------DOF5.7(2)   --------->YAB1                    --------->DAG2        --------->WRKY18(1)   <----------DOF2<---------ZAT18     <---------AHL20(2)     --------->DAG2    <------ZmHOX2a(2) ------GT1 <---------ARR14(2)  ----------->GT1              ---------->DOF2   <---------ARR11(3) =======================================MADS_MADS      ---------->DOF2        --------->ARR11(3)   cttctctttaacggaaactgcccacaccaaaaatagttatttaaactaaattaggggaaaagaaaagggacatgtaagaagatcaagtcaaccagatcta  18626300                               <------------CBF                              -------->HAHB4                              <--------ATHB1                              <---------ICU4                              --------->ATHB51                              --------->ATHB12                             --------->AHL20(2)                             <---------AHL20(2)                                                  ----     <---------At4g35610     --------->ICU4                                                      <---     --------->At4g35610   --------->YAB1                                                       <---- ->CCA1(2)            <----------ID1                                                            ----- -AGP1                ----------->GT1                     <---------YAB1                        ----- >AGP1             ---------->DOF2                   <---------ANAC58            ----------->RAV1(1) >ARR11(3)     --------->YAB1<---------ATHB51        <---------ANAC58   --------->MYB52(1)      <---- -ARR11(3)     --------->TOE1(3)             <---------ANAC58          --------->ICU4       --------- -ARR14(2)     --------->TOE2(3)          <------ZmHOX2a(1)        <------ZmHOX2a(1)     --------->YAB1 >ARR14(2) <---------AHL20(2)<---------YAB1  <---------ANAC58     --------->ANAC46      <---------YAB1   caaaattagctgtttaatcttaaaaggaaaaataattggatggaggagcttgtctgcgttctgattacaggacataatggatgcaacattttcataaatt  18626400           --------->TOE2(3)         ------>MYB46(1)         ------>MYB83         --------->MYB52(1)       <---------MYB59       <---------MYB46(2)       <---------MYB111(2)       <---------MYB111(1)      --------->ANAC46      --------->ANAC58      --------->ANAC55(1)      --------->ANAC58  <-----------GT1 ----->AHL20(2) ------AHL20(2) -----AHL20(1)                                                   ---------->DOF2 ---->AHL20(2)                               <---------YAB1    <------ZmHOX2a(1) ---->AHL20(1)      <-----------GT1    ------------>CBF  --------->CCA1(2) -----AHL20(2)    --------->AHL20(2) <-----------GT1  --------->ANAC58         <-----------GT1 >AHL20(2)>>>>>>>>>MYB98          <---------ICU4      --------->ANAC58      ----------->GT1   tattttacacctaacttaaatttaacaaaacttcaaaaattaccaatatgatagccaagaaacgaggaaaagacagcaatgttacatttggaagtttgat  18626500                                                  <---------ANAC58                        --------->ATHB12          <---------ANAC58                <---------AHL20(2)                       <---------YAB1             <---------ANAC46        --------->AHL20(2)                       ------>ZmHOX2a(1)     <---------ANAC58          --------->AHL20(2)                      --------->TOE2(3)      <---------ANAC58          <---------AHL20(1)                   <---------ARR14(2) <----------DOF2                  --------->AHL20(1)                   --------->ARR14(2) <---------DAG2                   <---------AHL20(2)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            <---------AHL20(2)   --------->TOE2(3)           <----------DOF2         <---------ALFIN1               --------->AHL20(2)   ----------->GT1      <---------At4g35610         --------->MYB46(3)       ---------->DOF2<---------AHL20(2)     <---   aaacattcagaggctttagagcatcctcattggtgaaccacttttttgagtgtcttgaaactaaagtatttaatattttaatattaaaaatgttaaaaga  18626600  Previous    Next  AGI:  At5g45875.1    Description:  SCRL27 (SCR-Like 27). Identical to Protein SCRL27 precursor (SCRL27) [Arabidopsis Thaliana] (GB:P82646); similar to SCRL26 (SCR-Like 26) [Arabidopsis thaliana] (TAIR:AT4G22105.1); contains InterPro domain Plant self-incompatibility response; (InterPro:IPR010682) Range:  from: 18625684    to: 18626138    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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