Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   ----                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                -----                                                                                                <----                                     ------>ZmHOX2a(2)                              <---------ICU4                                   <---------ARR11(3)                               --------->ATHB12                                <---------WOX13(1)                                 <---------YAB1<---                               <---------ANAC58                           --------->YAB1        <----          <---------YAB1       <---------ANAC46                        ------>MYB83--------->ICU4----        <---------AHL20(2)     <---------ANAC58                        ------>MYB46(1)       <-------       <---------YAB1       <--------P                         --------->YAB1---------->DOF2 --------      --------->AHL20(2)  <---------MYB46(3)          <---------AHL20(2)  --------->AHL20(2)--------- <-------TEIL             --------->ATHB12       <---------AHL20(2)  <---------MYB59--------->YAB1   agattcatttttatttttgacattagaatggttgcttgatctacaagttagtttatttttttgtttgataaccaaattataaagaatgattacatttaat  18580400         <---------AHL20(2)     ----------->GT1 <---------AHL20(2) ----->ATHB12 ---->ATHB1 ---->HAHB4 ------AHL20(2) ---->ICU4                                         <---------MYB46(3) -----ATHB51                          <---------ANAC58 ------ICU4                           --------->ANAC55(2) -----YAB1                            <---------ANAC55(2)                <-----------GT1 ----->ATHB51                         <---------ANAC58                  <---------AHL20(2)   <------- --AHL20(2)             --------->YAB1<---------ANAC55(1)               <-----------GT1  <---------GLK1(2) ->AHL20(2)            <---------YAB1 <---------ANAC46          <---------ANAC46         --------->ARR11(3) >AHL20(2)     <----------DOF2       --------------->AtSPL3  <----------DOF2       <----------DOF2   tattgaattgttaaattcttttactatcatcaacttcattacgtactatttgtttgttctatacttttgtgtatttaacttctccctttcagatttttct  18580500                                                           <---------AHL20(1)                                                           --------->AHL20(1)                                                           --------->AHL20(2)                                                      ------------>CBF                                                --------->AHL20(2)        <---------ICU4                     <---------GLK1(2)          <---------AHL20(2)       <---------YAB1                     --------->ARR11(3)        --------->AHL20(1)      --------->YAB1       ------>MYB83                     <---------ARR11(3)        <---------AHL20(2)     <---------YAB1        ------>MYB46(1)                   <---------TOE2(3)           <---------AHL20(1)<---------YAB1             -------->P                   <---------YAB1              --------->AHL20(2)----------->GT1          <---------MYB59            ------------>CBF              ------------>CBF <---------AHL20(2)             --------->TOE1(2)  ---------->ID1 --------->YAB1        --------->GLK1(1)  <---------ATHB12--------->YAB1  <---------MYB111(1) ----GT1   --------->ANAC46            <---------GLK1(1)  --------->AHL20(2)           <-----------GT1   tcttgtcccatttacacaattaagattttgttacgaagttgaaatccaatttatttttcaataaattatgttataatcataacaaaaaataacctaccat  18580600                             <-----------GT1                         --------->AHL20(2)                       --------->ANAC58                       ----------->GT1                       --------->ANAC55(1)                       --------->ANAC58                       --------->ANAC46                                         <-----------GT1                       <---------ANAC55(2)                                   --------->YAB1                   ----------->RAV1(1)                                  ----------->GT1      --------->TOE2(3)--------->ANAC55(2)        <-----------------------TaNAC69(2)       <---------ALFIN1 ------------>CBF <----------ID1            <---------LBD16           <---------LBD16 <---------ATHB12   tctaacaatctcaactcagagcaacaagtaatttctatttggatactacggagacttagaaaattaagagactggggaaaaataacaaatcaaacacttc  18580700                                                  <----------DOF2                                             --------->HSFC1(2)                       <---------ZAT14                            ----------->HVH21<---------HSFC1(2)         --------->HSFB2a(1) <--------                      <---------ZAT14      <---------ARR11(3)   <---------ICU4        <---------ZAT18          ---------->DOF2 ----------->GT1--------->ANAC58      <---------ATHB12       --------->ZAT14 <----------DOF2      --------->ZAT14    --------->ANAC58  ------------>CBF   ------>ZmHOX2a(1)    --   cctctttaagagtaaagaagtctctaaactgtgacaaactcacaagacccttctttcaaattccaatctttccaacattcctcttctgtccactatgaaa  18580800             ------->GAMYB             --------->ANAC46             --------->DEAR3(1)             --------->ANAC58             --------->DREB2C(2)             --------->ANAC58             --------->RAP2.6(2)            <---------MYB55(2)            <------------AtMYB77            --------->MYB46(3)          <---------ALFIN1         --------->MYB46(3)       --------->AtMYB61             ------>ZmHOX2a(1)             --------->ARR14(2)       ------->GAMYB              ------>ZmHOX2a(1)                <---------ARR14(2)       --------->TOE2(3)         <---------ALFIN1              ------>ZmHOX2a(1)     -------->P                ------>ZmHOX2a(1)     ------->GAMYB------>ZmHOX2a(1)   --------->MYB46(3)         <---------ALFIN1       <---------ALFIN1                               -  --------->At4g35610       ------>ZmHOX2a(1)       <---------MYB55(2)                        -------  --------->ZAT2           <---------ALFIN1         --------->MYB46(3)  --------->ANAC46      <------  <---------At4g35610      <xxxxxxxxxxxxxxxxsmallRNA(se3)  --------->ARR14(2)             ---------->DOF2 -YAB1--------->MYB46(3) ------>ZmHOX2a(1)--------->O2   <-----------HVH21            --------->At4g35610 ------->LBD16          <---------ALFIN1<---------ALFIN1--------->DEAR3(1)            <---------At4g35610   ccgcagcaaccacaaccgccattgctcctcctcctcctcctcccacttctcttaaccaccgtctcctcctatccactaaacccaaaacagctcaaagctc  18580900                                                                  --------->TOE1(1)                                                                 ------>ZmHOX2a(1)                                                        <---------ATHB12                                                       --------->ARR14(2)                                                       ------>MYB83                                                       ------>MYB46(1)                                        --------->MYB46(3)    ------>ZmHOX2a(1)                                ==================================HOX2a_HOX2a         --------->HSFC1(2)                                =====================================HOX2a_HOX2a      <---------HSFC1(2)                             -------->HAHB4            <---------ARR14(2)             --------->HSFB2a(1)                             <---------ICU4          --------->AtMYB61             ------>NtERF2           <---------ARR11(3)--------->YAB1         --------->MYB46(3)            --------->DEAR3(1)     --------->ANAC58       <---------ATHB12      ------->GAMYB <---------ALFIN1  --------->O2     --------->ANAC58   --------->MYB46(3)       <---------MYB111(2)              <---------DEAR3(1)     --------->ANAC46   <---------MYB52(2)       <---------MYB55(2)               <---------O2    --------->WOX13(1) ------>MYB46(1)  --------->REM1(1)    <---------ALFIN1     ----------->HVH21  <---------ATHB12     ------>MYB83   ----------->RAV1(1)  ------>ZmHOX2a(1)   ----------->HVH21   -- -------->WOX13(1)--------->REM1(1)--------->ANAC46--------->ANAC58         --------->TOE1(2)     --- -->ARR11(3)      --------->ANAC46 --------->AtLEC2--------->ANAC58        <---------ANAC58     ----- ---ARR11(3)     --------->ZAT14------>ZmHOX2a(2)--------->MYB46(3)        <---------ANAC58   ------>ZmHOX2a(1)   tccaatcactcaacatctctacaccaactaatgatccctgcaacaacaacaacaaccaatcctcctcctcgtccataacttgcgacgacgcttctcctta  18581000         --------->TOE2(3)        --------->At4g35610    <-----------HVH21   --------->ANAC46   --------->O2   --------->TGA1a   --------->REM1(1)                                                                  --------->At4g35610   --------->bZIP60(2)                                                         --------->RVE1(1) <---------ALFIN1                                                             --------->GLK1(2) ----------->RAV1(1)                                         --------->ANAC46 <---------ARR11(3) ---->NtERF2                          --------->ANAC46       --------->ANAC58 --------->ARR11(3)   -- ------>ANAC46                    ------>ZmHOX2a(1)--------->ANAC46--------->MYB46(3) <---------At4g35610 ---->SPL7         ------>ZmHOX2a(1)<---------ALFIN1         --------->ANAC58<---------GLK1(2)  <----   ccgccacatcacctcaatctccttcacaaactgctcctccactctatctctcccctccaaaacactcaaaccactctcaaaatctctcatctccctctct  18581100                                                                     ------>ZmHOX2a(1)                                                                 --------->ARR14(2)                                                               <---------ATERF1(1)                                                               ------>NtERF2                                                               <-----------HVH21                                                              --------->RAP2.3(3)                                                              --------->RAP2.3(2)                                                             --------->RAP2.3(1)              ------>MYB46(1)                                       --------->ARR14(2)   <---------ATERF1(1)             <--------                                   ------>MYB83             ------>NtERF2                   <--------                                   ------>MYB46(1)          --------->LBD16                 <--------                                 <---------MYB111(2)       --------->ANAC46             <---------SPL7      ------->GAMYB              <---------MYB111(1)       --------->DEAR3(1)          ------->GAMYB<     --------->MYB46(3)          --------->AtMYB61        <---------LBD16   ------>ZmHOX2a(1) ------>MYB83     <------------AtMYB77        --------->DEAR3(1)   ------>ZmHOX2a(1) ------>ZmHOX2a(1) --------->SPL7   --------->MYB52(1)         <---------ALFIN1  <---------ALFIN1--------->ATERF1(1)   --------------- ------->ZAT6          ------>ZmHOX2a(1)       --------->ZAT14--------->DEAR3(1)    --------->MYB52(1) ------DOF2 --------->ZAT14 --------->SPL7   --------->ANAC46--------->ORA47(2)    --------->MYB46(3)   ttcactaactgcccttcactctctcctccataccacctcccaatctccctccactccttctccgccgtctcctccttcctccaaaacaaccgtaccaaac  18581200   ------>NtERF2  --------->LBD16  ------>NtERF2                                        ------->GAMYB -MYB59                                                --------->TOE2(3)                            < -MYB111(1)                                          -------->P                           <---------LBD16 -MYB46(2)                                          <---------ALFIN1                      ------>ZmHOX2a(1) ---------LBD16              --------->TOE1(3)    ------>ZmHOX2a(1)           <----------DOF2      -- >AtSPL3    ------>ZmHOX2a(1)--------->TOE2(3)   --------->TOE2(3)       ---------->ID1   --------->LBD16   tctccggcctcttcctcgctcgtctcaaaaacctcaaaaccctctacatttcctcaaccccaatccaaacctctcgtcgtctttatgtcatcctcggaaa  18581300  Previous    Next  AGI:  At5g45760.1    Description:  transducin family protein / WD-40 repeat family protein. similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G11160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48027.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 18578338    to: 18580422    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g45770.1    Description:  leucine-rich repeat family protein. similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT4G18760.1); similar to putative leucine-rich repeat family protein [Gossypium hirsutum] (GB:AAT64015.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 18580795    to: 18582148    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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