Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  xxxxxxxxxxxxxxxxxxxxx                                                                             <-----------GT1                                                                          --------->YAB1                                                                          <---------ICU4       <---------ALFIN1                                                  --------->ICU4          ----   --------->At4g35610                                                   <---------YAB1    <---------MYB52(2)   <---------At4g35610                 <---------ANAC55(2)             --------->YAB1   --------->MYB46(3) -------TEIL                  --------->At4g35610               <---------ZAT6 ----------->RAV1(2)   gtttcatctccactcttgcaaacttggcaaatagctgtatcacataagtgtcttctctgtctctcagtgttagtcataataacctgatgaacaactagcc  18504700                                                                                              <------                                                                              --------->LBD16 xxxxxxx                                                                              xxxxxxxxxxxxxxxxxxxxxxx                                                                             <---------ANAC58xxxxxxxx                                                                             --------->ANAC55(2)                                                                             <---------ANAC46--------                                                                             ----------->GT1---------                                                                             <---------ANAC58<-------GAMYB                                  <---------At4g35610                        <---------ANAC55(2)                                  --------->At4g35610              <xxxxxxxxxxxxxxxxsmallRNA(s)                                  <---------ZAT2                  <---------MYB52(1)       <xxxxxxxxx                                  ----------->RAV1(2)         xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxx                                --------->MYB46(3)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     <---------MYB52(1)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    --------->LBD16                       ----------->HVH21xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          <---------ALFIN1  --------->DOF5.7(2)     --------->AHL20(2) <xxxxxxxxxxxxxxxxsmallRNA(i) -        --------->ANAC58    <---------MYB52(1)    <---------MYB52(1) <---------At4g35610  <xxxxxxxxxx        --------->ANAC58   <-------GAMYB  ----------->HVH21 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <- xx>smallRNA(si3) <---------LBD16 --------->ZAT2----------->GT1  <-----------HVH21       --------->ANAC46 ------>DOF2   <----------DOF2<---------DOF5.7(2)--------->At5g28300--------->MYB52(2) <-----------GT1   aaagaaaaactcgcactctttccggtgtccgttaacagctgggtttgacaccgttaaaatttgacaccgttagatgattccgtaaaatttaacgccgtta  18504800                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxx>smallRNA(i)                  --------->MYB52(1)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                --------->DOF5.7(2)              <---------CCA1(2)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          <---------ANAC58                     --------->AHL20(2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------AHL20(2)          <---------ANAC58                 --------->AHL20(2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------AHL20(2)       <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------AHL20(2) <---------GLK1(2)<---------DOF5.7(2)      --------->ATHB51                             <---------RVE1(1) ---MYB52(1)    <---------MYB52(1)         <--------ATHB1                             ----------->GT1 xxxxxxxxxxxx>smallRNA(fl3)                <---------ICU4                            <---------TOE2(3) >smallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                             <---------AHL20(2) xxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(i)                             --------->AHL20(2) ->At5g28300 <-------TEILxxxxxxxxxxxxxxxx>smallRNA(i)                       <---------ICU4 -->GT1xxxxxxxxxxxxxxxx>smallRNA(i)       --------->ICU4         <---------YAB1<---------AHL20(2) xxxxxxxxxxxxxsmallRNA(i2)                <---------ATHB12<---------CCA1(1)--------->AHL20(2) xxxxxxxxxxxx>smallRNA(se3)               <---------ATHB51<---------RVE1(1)<---------ATHB51 ------->HAHB4<---------MYB46(3)        --------->YAB1   --------->ARR11(3)--------->ICU4 xxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------ARR11(3)<---------AHL20(2)   ----- --------ATHB12<-------GAMYB <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <---------ATHB12   <------   aatgattctgtaacgtccgttaacggttgagtttgattccactaataatttatatctgagatattttgtgattacaaataattaaatgaggtatttttac  18504900               <---------ANAC58               <---------ANAC58         <---------AHL20(1)         --------->AHL20(1)        <---------YAB1    <---------AHL20(2)            --------->AHL20(2)    --------->AHL20(2)            <---------AHL20(2)                                               <-   <---------AHL20(2)        <---------AHL20(2)                                                   <--   --------->AHL20(2)        --------->AHL20(2)                                          <---------YAB1 ---->ZAT6     <---------ANAC46  --------->AHL20(2)                                   <---------YAB1 -----GT1--------->ARR11(3) --------->AHL20(2)           <-----------GT1        <---------ZAT6 ------   tctaatttaaaaatattgggtattaaacttttaaattaaaattagtttttttttttttttttccaaatgtttttatattctagtgtttatgcttattagc  18505000                                        <---------AHL20(1)                                        --------->AHL20(1)                                        <---------AHL20(2)                                        --------->AHL20(2)                                       --------->AHL20(2)                                       <---------AHL20(2)                                 <---------At4g35610                         <---------ANAC58          <-----------HVH21 --------ANAC46          <---------ANAC58 <------------CBF                        ---------->DOF2 -----TEIL  <---------YAB1       --------->At4g35610          ----------->GT1  --------->TOE2(3) --->At4g35610  <-------TEIL --------->ALFIN1     <----------DOF2              --------->TOE1(3)   tacgtagacaaattttgatacatttgggcctgtgtagctaaataaattgggcctttcacatgagtagataaaactaataaacctaaaagaaatcgtcttg  18505100                                                   <-----------RAV1(1)                                                  ------>ZmHOX2a(2)                                                 <------ZmHOX2a(2)                                                <---------ARR14(2)                ------>ZmHOX2a(2)               <---------ARR11(3)              <---------AGP1 *TSS               --------->ARR14(2)              --------->ARR11(3)                --------->ARR11(3)              --------->ARR14(2)                <---------AGP1                    <---------ZAT6              <---------ARR14(2)                --------->AGP1                  <---------ANAC46         <---------MYB52(1)----------->GT1     <---------CCA1(2)                <---------ANAC58        <---------SPL7  <------------CBF      ----------->ARR10        <-------TEIL        ---------- --------->ARR14(2)    --------->ATHB12  ---------->DOF2    ---------->DOF2     <---------ANAC58   ttgaattcgccgtttggatctggctccattggaaaaaaaaactagaagcagatctgttgaagttaagccgagattcatcaattcgtgttatttgtctctc  18505200                  --------->SPL7                                          ---------->DOF2                  <---------TOE1(2)               <---------YAB1        --------->LBD16                --------->TOE1(2)              <-----------GT1         --------->HSFB2a(2)                --------->TOE2(2)           --------->AHL20(2)         <---------HSFB2a(2)                <---------SPL7              <---------AHL20(2)        <---------LBD16               --------->TOE1(1)      --------->TOE2(3)     --------->TOE2(3)   --------->ANAC58        >>>>>>>>>TBF1    <---------ICU4  --------->TOE1(3)   --------->ANAC58     >>>>>>>>>TBF1 --------->TOE1(3)   <---------ARR11(3)                    <---- >ID1          --------->TOE2(1)--------->At4g35610       --------->ARR11(3)            --------->MYB52(1)   ttgataagcaaaaaacatcgtacgaagaagaagaagatgaccttaattttttctgaatgaaatcttaaaattcccagaaagaagaatgacgaacagctcg  18505300                                                 <---------CCA1(2)                                          ------>MYB46(1)                                          ------>MYB83                                   <-------TEIL                                    <---------ZAT18                                  --------->DAG2                                 --------->MYB52(1)                                  <---------------AtSPL3                    <------ZmHOX2a(2)    <---------ALFIN1                          ---------->DOF2                   <---------ARR11(3)  --------->DEAR3(2)                    --------->TOE1(2)      <                   --------->ARR11(3) ------->TEIL                        <---------ARR14(2)  <------ -------HVH21      --------->ARR14(2) --------->PCF2                      --------->ARR14(2)<--------   tcatcgaagaaacaagctcaagatcagccagaaactagcgaacccactctcaaatctctcaaaaccaagatgactaaatccgacgaaaaggtccgtcttt  18505400                                                           <---------AHL20(2)                    <---                                                           --------->AHL20(2)                    <---                                                           --------->AHL20(1)            --------->ARR11(3)                                                           <---------AHL20(1)            --------->GLK1(2)                                                          --------->AHL20(2)  ------>MYB46(1)   <----                             <---------ZAT18              <---------ATHB12    ------>MYB83--------->RVE1(1)                             --------->ZAT18<---------HSFB2a(2)       --------->YAB1     <---------ARR11(3)                  ---------->DOF2           --------->HSFB2a(2)       <---------ICU4    --------->RVE1(1) ----------DOF2<---------------AGL15        <---------ANAC55(2)      --------->ICU4     --------->CCA1(1) ----DOF2      ====================================================================================== -MYB52(1)     --------------->AGL15        --------->ANAC55(2)      <---------YAB1   --------->AHL20(2)   ttctttcttcaatcgaactcaaaagagcaagtccacttattttgttctgtaacctcttcaataaattggtcatcatcaccaacttaaaaaaaatctctcc  18505500                 --------->At4g35610              <---------At4g35610     ----------->GT1           --------->ARR11(3) -------DOF2  --------->At4g35610                                <---------REM1(1) ------DAG2  ----------->RAV1(1)    --------->AHL20(2)      --------->YAB1    <---------ANAC58 -------------AGL3         ---------->DOF2                  ----------->GT1   <---------ANAC58 =============MADS_MADS --------->TOE1(3)              <---------ANAC46       <---------ANAC46   tttttttgggttaaacagcagaagaagcttaaagacattgaaataagcgttccaattgtgtatggtaatgtagcattctggcttggcaagaaggctagtg  18505600  Previous    Next  AGI:  At5g45600.1    Description:  GAS41 (TBP-ASSOCIATED FACTOR 14B). similar to TAF14 (TBP-ASSOCIATED FACTOR 14) [Arabidopsis thaliana] (TAIR:AT2G18000.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47268.1); contains InterPro domain YEATS; (InterPro:IPR005033) Range:  from: 18505129    to: 18507096    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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