Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     --------->LBD16                                                                                  <---------O2                                                                                  <---------TGA1a                                                                                  <---------ANAC58                                                                                --------->ZAT2                                                                                ------>MYB46(1)                                                                              <---------MYB55(2)                                                              <---------CCA1(2) ------>MYB83                                                             ------->TEIL     <---------ALFIN1          <---------ANAC46                             --------->ANAC46       --------->MYB46(3)         <------NtERF2                 --------->TOE2(2)  --------->DEAR3(1)  --------->AtMYB61         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <---------ALFIN1      --------->ZAT2  ---------->DOF2                      --------->TOE1(2) --------->ANAC46   ------>NtERF2 ------->At4g35610                     --------->TOE2(3)------>NtERF2      <---------ALFIN1 --------At4g35610             --------->ANAC58       --------->MYB46(3)   --------->ANAC46      <--- --->ARR14(2)                ---------->DOF2      <---------ARR14(2)    --------->PCF2         ------ ----ARR14(2)<-------TEIL   <---------AHL20(2)    --------->ARR14(2)  <-----------GT1        <------- >DOF2   --------------->AtSPL3--------->ANAC58  --------->ZAT2    --------->YAB1 <---------ANAC58   ctgctaaaggagccgtacatacccctatattaaaagcaaaaccttggacccagttccccaccgcatctctaatgaccccaccagccgtggctaaacccgg  18504200                                                                ----------->HVH21                                                            --------->WOX13(1)                                 --------->MYB46(3)       <---------ATHB12                   --------->LBD16                       ------>MYB83                  <---------ANAC58  ------>MYB46(1)      --------->ANAC46                  <---------ANAC46  ------>MYB83         --------->ANAC58                  --------->ANAC55(2)  ------>ZmHOX2a(1) ------>MYB46(1)                   ---------- <-----------------AGL1  <---------TOE2(3)          <---------WRKY18(1) <---------ALFIN1 --------->At4g35610 --------HVH21    <---------ANAC55(1) --------->TOE2(3)  --------->ANAC58       xxxxxxxxxxxxxxxxxxxxx --->LBD16        <---------ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ZAT14   <---------At4g35610 --LBD16      <---------ALFIN1 <-----------GT1--------->LBD16 ----------->RAV1(2)------->GAMYB   gttacctcttgaggctccatccgtgttaagtttgaaccatccttcatccggtcttgaccaagcaatctgacgctccactctaaccctcttaatctgacct  18504300                                                                 <---------ZAT18                                                               --------->ANAC55(2)                ---                                                               <---------ANAC55(2)                ---                                                               --------->ANAC58                  ----                                                               --------->ANAC46                  <---                                                               --------->ANAC55(1)              <----                                                               --------->ANAC58                ------                <---------ANAC58                              <---------LBD16                 -------      --------->ANAC58                                      <------ZmHOX2a(2)                 -------      --------->ANAC58                   <----------DOF2    ====================HOX2a_HOX2a   -------  --------->ANAC58                  --------->ARR11(3)     <-----------HVH21                 <-------  --------->ANAC58           <----------DOF2            --------->SPL7                  --------->HSFB2a(1) ->HVH21        <---------ANAC58    <---------ARR11(3)<---------SPL7     ------>ZmHOX2a(1)--------->DOF5.7(2) xx>smallRNA(se3)<---------WOX13(1)<---------GLK1(1)<---------------AtSPL3              <---------HSFB2a(1)   ccattcgcaagacaatgtgcttgatacacatcttttgatatctctttcacaaactgggtacgatcacggcacttcctattctcaccaaaaacgttcccgc  18504400                                                                               ------->MYC3                                                                               <-------MYC3                                                                              <---------O2                                                                              <---------TGA1a                                                                              --------->O2                                                                              --------->TGA1a                                                                              ====================bZIP_DOF                                                                  --------->At4g35610                                                                  --------->ZAT2      <-----------HVH21                                           --------->O2====================bZIP_DOF     <----------DOF2                                              ----------->RAV1(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                          --------->MYB52(1)  <---------ALFIN1                            --------->ANAC58  ========================MYC_MYB ------>At4g35610                             --------->ANAC58  ------->GAMYB<---------TOE2(2) ------>GLK1(1)                             <---------ALFIN1    <---------ALFIN1 --->TEIL                                --------->PCF2        <---------MYB111(2) --------ARR10                           --------->ANAC46      <---------MYB55(2) -----ALFIN1                          <-----------HVH21      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --->LBD16                          <<<<<<<<<TAC1         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -->ANAC58                        --------->ZAT6       <---------ALFIN1      <---------TOE1(2) -->ANAC46--------->ANAC58       --------->ZAT14  --------->ARR14(2)        <---------ALFIN1  ------- -->ANAC58--------->ANAC46       <---------ZAT14  <---------ARR14(2)----------->HVH21  ---------->DOF2 --LBD16  --------->ANAC58     --------->ZAT14--------->ANAC46 --------->MYB46(3)   --------->TOE2(3)   atctccactttcacgcccatcacattgccatactgaacactgtcccccacggtatcccctctctaaccacctgacttcccacgtttccataaatccactc  18504500                                                                      --------->LBD16                                                                  --------->DEAR3(1)                                                                  *TSS<---------SPL7                                    --------->ALFIN1           <---------ICU4                                  <------MYB46(1)              --------->YAB1                ---------->DOF2   <------MYB83                 xxxxxxxxxxxxxxxx>smallRNA(s)           ----------->GT1       --------->MYB111(1)          <---------ATHB12         <---------ANAC46        --------->MYB111(2)         <-----------HVH21         <---------ANAC58        <---------AtMYB61          --------->ANAC46         --------->GLK1(2)         <---------ANAC58        --------->MYB46(2)    <---------ARR14(2)            --------->ARR14(2)    --------->ATHB12    <---------LBD16                --------->ARR14(2)       --------->LBD16   <---------YAB1   <---------ARR11(3)                <---------CCA1(2) ------------>CBF            <   --------->ICU4   --------->ARR11(3)           <---------ARR14(2)  --------->DEAR3(1)  ----------->GT1 -->ANAC46 <---------ZAT6       <--------P       --------->ARR14(2) <---------LBD16  <---------ARR14(2)   tagtaatgtttgagtgtaaaaaggtctctggagagtaggtggaacaatacggttccatatccccatcatcgccggacaatccctgagaatatggagaata  18504600                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                             <-----------GT1                                                                          --------->YAB1                                                                          <---------ICU4       <---------ALFIN1                                                  <---------YAB1          ----   --------->At4g35610                                                   --------->ICU4    <---------MYB52(2)   <---------At4g35610                 <---------ANAC55(2)             --------->YAB1   --------->MYB46(3) -------TEIL                  --------->At4g35610               <---------ZAT6 ----------->RAV1(2)   gtttcatctccactcttgcaaacttggcaaatagctgtatcacataagtgtcttctctgtctctcagtgttagtcataataacctgatgaacaactagcc  18504700                                                                                              <------                                                                              --------->LBD16 xxxxxxx                                                                              xxxxxxxxxxxxxxxxxxxxxxx                                                                             --------->ANAC55(2)                                                                             <---------ANAC58<-------GAMYB                                                                             <---------ANAC46xxxxxxxx                                                                             <---------ANAC55(2)                                                                             ----------->GT1---------                                  <---------At4g35610                        <---------ANAC58--------                                  --------->ZAT2                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                  <---------ZAT2                  <---------MYB52(1)       <xxxxxxxxx                                  ----------->RAV1(2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                --------->MYB46(3)            xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxx                     <---------MYB52(1)                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    --------->LBD16                 --------->AHL20(2) <xxxxxxxxxxxxxxxxsmallRNA(i) -          <---------ALFIN1  <---------MYB52(1)    <---------MYB52(1) <---------At4g35610  xxxxxxxxxxx        --------->ANAC58    --------->DOF5.7(2) ----------->GT1  <-----------HVH21       --------->ANAC46        --------->ANAC58   <-------GAMYB  ----------->HVH21 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <- xx>smallRNA(si3) <---------LBD16 --------->At4g35610     ----------->HVH21xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------>DOF2   <----------DOF2<---------DOF5.7(2)--------->At5g28300--------->MYB52(2) <-----------GT1   aaagaaaaactcgcactctttccggtgtccgttaacagctgggtttgacaccgttaaaatttgacaccgttagatgattccgtaaaatttaacgccgtta  18504800                         xxxxxxxxxxxxxxxx>smallRNA(i)                   xxxxxxxxxxxxxxxx>smallRNA(i)                  --------->MYB52(1)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                --------->DOF5.7(2)              <---------CCA1(2)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          <---------ANAC58                     <---------AHL20(2)          <---------ANAC58                 <---------AHL20(2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->AHL20(2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------AHL20(2)       xxxxxxxxxxxxxxxx>smallRNA(i)        --------->ATHB51 <---------GLK1(2)<---------DOF5.7(2)      --------->AHL20(2)                           <---------RVE1(1) ---MYB52(1)    <---------MYB52(1)         <--------ATHB1                             ----------->GT1 xxxxxxxxxxxx>smallRNA(fl3)                <---------ICU4                            <---------TOE2(3) >smallRNA(le3)<-------GAMYB              <---------ATHB12                      <---------AHL20(2) xxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(i)                             --------->AHL20(2) -->GT1<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ATHB51                  <---------ICU4 ->At5g28300 <-------TEILxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------YAB1<---------AHL20(2) xxxxxxxxxxxxxsmallRNA(i2)                --------->ICU4  <---------CCA1(1)<---------AHL20(2) xxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         --------->AHL20(2) ------->HAHB4<---------MYB46(3)        --------->YAB1    <---------RVE1(1)--------->ICU4 xxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(i)  --------->ARR11(3)<---------ATHB12     ----- --------ATHB12<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <---------ARR11(3)<---------ATHB51   <------   aatgattctgtaacgtccgttaacggttgagtttgattccactaataatttatatctgagatattttgtgattacaaataattaaatgaggtatttttac  18504900               <---------ANAC46               <---------ANAC58         --------->AHL20(1)         --------->ARR11(3)        <---------YAB1    --------->AHL20(2)            <---------AHL20(2)    <---------AHL20(2)            --------->AHL20(2)                                               <-   <---------AHL20(2)        --------->AHL20(2)                                                   <--   --------->AHL20(2)        <---------AHL20(2)                                          <---------YAB1 ---->ZAT6     <---------ANAC58  --------->AHL20(2)                                   <---------YAB1 -----GT1<---------AHL20(1) --------->AHL20(2)           <-----------GT1        <---------ZAT6 ------   tctaatttaaaaatattgggtattaaacttttaaattaaaattagtttttttttttttttttccaaatgtttttatattctagtgtttatgcttattagc  18505000                                        <---------AHL20(2)                                        --------->AHL20(2)                                        <---------AHL20(1)                                        --------->AHL20(1)                                       <---------AHL20(2)                                       --------->AHL20(2)                                 --------->At4g35610                         <---------ANAC58          <-----------HVH21 --------ANAC46          <---------ANAC58 <------------CBF                        ---------->DOF2 -----TEIL  <---------YAB1       <---------At4g35610          ----------->GT1  --------->TOE1(3) --->At4g35610  <-------TEIL --------->ALFIN1     <----------DOF2              --------->TOE2(3)   tacgtagacaaattttgatacatttgggcctgtgtagctaaataaattgggcctttcacatgagtagataaaactaataaacctaaaagaaatcgtcttg  18505100  Previous    Next  AGI:  At5g45595.1    Description:  transposable element gene. similar to reverse transcriptase-related [Arabidopsis thaliana] (TAIR:AT5G26642.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE89875.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) Range:  from: 18503902    to: 18504566    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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