Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         <---------TOE2(3)                       <---------YAB1                      <-----------GT1               <---------At4g35610                                                                 --          --------->ANAC58                                                                   --------          --------->ANAC58                                                         ----------->GT1 --  ---------->DOF2    <-----------GT1                                      ------->GAMYB      <-------   aaaacaaagtgcaagtaagcttattaacattctttgaattagtatttagtaatccatgttgttgattttgtttcaacagaacatatagaaaattcagaag  18503100                                                ==============HOX2a_HOX2a                                                ------>ZmHOX2a(2)                                                =================HOX2a_HOX2a                                               <------ZmHOX2a(2)                                              <-----------ARR10                                              <---------ARR14(2)                                              --------->AGP1                                              <---------ARR11(3)                                              <---------AGP1                                              --------->ARR14(2)                                              --------->ARR11(3)                                              <---------ARR14(3)                                              --------->ARR14(3)                                             <---------CCA1(2)                            --------->ANAC58                                             <---------At4g35610                <---------ARR14(2)                                         <-----------HVH21                      --------->ARR14(2)                                        --------->TGA1a                --------->WOX13(1) --------->ANAC58                                        --------->O2        ----------->ARR10   --------->ARR11(3)                                  <-----------HVH21       ------>ZmHOX2a(1) <---------At4g35610           <-----------GT1       --------->ANAC58      ------>ZmHOX2a(1)  --------->YAB1---------->DOF2 ------->At4g35610               --------->ANAC58   ---------->ID1 ---------->ID1--------->CCA1(2) ->At4g35610                  <---------STY1(2)==================HOX2a_HOX2a--------->At4g35610 --------->GT1                --------->STY1(2)===============HOX2a_HOX2a<---------ATHB12--------->DAG2 --At4g35610              --------->STY1(2) ----------->ARR10 --------->ARR11(3)<---------ARR11(3)   aagctaaaactatataccaattcaaactatctagctcgtcactcgtcagatcttgtcctcctaagatttgtctcaatcagcagatatatataaagcaatt  18503200                                                                                         --------->At4g35610                                                                                 <------NtERF2                                                                                ------>NtERF2                                                                                --------->LBD16                                                                               <---------ANAC46                                                                              <---------LBD16                                                                             <---------ERF1                                                                             <---------ORA47(2)                                                                             <---------RAP2.3(1)                                                                             <---------DEAR4(2)                                                                             <---------ATERF1(1)                                                                             <---------RRTF1(1)                                                                             ------>NtERF2                                                                             <---------RAP2.6(1)                                                                            <---------RAP2.3(3)                                                                            <---------RRTF1(2)                                                                            <---------RRTF1(3)                                                                            <---------RAP2.3(2)                     ----------->HVH21                                      --------->ATERF1(2)                   <---------ANAC55(2)                                      --------->DEAR3(1)                   <---------ANAC46                                        <---------ABI4(1)                   <---------ANAC55(1)                                     --------->ATERF1(1)                   <---------ANAC58                                       <---------RAP2.3(1)     <--                   <---------ANAC58                                       ------>NtERF2  --------->ZAT2                   --------->ANAC55(2)                                    <---------ATERF1(1)     <--                  <<<<<<<<<NAP                                 ----------->GT1<------NtERF2       <--                --------->TOE2(2)        --------->ZAT18      --------->ANAC46--------->ATERF1(1)<---         <---------HSFC1(1)          --------->ALFIN1        <---------LBD16<---------ATERF1(2)  ----         --------->HSFB2a(2)      <---------TOE2(3)        ----------->HVH21<---------DEAR3(1)   <---         <---------HSFB2a(2)    ---------->DOF2   --------->At4g35610     --------->LBD16<---------At4g35610        <---------LBD16     <------ZmHOX2a(1)     <---------At4g35610   <---------LBD16 ------->TEIL      --------->GLK1(2) --------->ICU4   <---------ZAT18--------->TOE1(2)<---------DEAR3(1)    <-----   gaagctaaattctggaaacttacgtgatgaggaacaaaggtagtgcccatggagctaacattcgacggaaaaactccggcggcgggaacgaagctccatt  18503300                       <-------GAMYB                      --------->MYB111(2)                      --------->MYB55(2)                                             --------->At5g28300 ----MYB83            <---------MYB46(3)                                            ----------->GT1 ----MYB46(1)        <--------P                                                 <---------ABI4(2) -------ANAC46      <-------GAMYB                                              --------->ANAC58 ------MYB46(3) --------->STY1(1)  ----------->HVH21                           --------->ANAC58   <-- ----->MYB55(2) <---------STY1(1)  ----------->TGA1<------ZmHOX2a(1)   --------->ALFIN1           --- ------AtMYB61 --------->TOE1(2) <---------ANAC55(2)                <---------DEAR3(1)   ---------->DOF2 ----MYB52(1)  --------->TOE2(2) --------->ANAC55(2)     ----------->GT1   <------ZmHOX2a(1)     <---   tggtggaattggcaaaacctagggttgttgttgttaagtgacgactcggagaaggagaatggtgaatgagacggtgaggagaagcaccgtaaaaagagag  18503400                                               --------->ZAT14                                               <---------ZAT14 <---------YAB1                         --------->ARR14(2)                                          < -------ARR14(2)                    --------->ZAT18   <---------ANAC58             <---------WOX13(1) ------>GLK1(2)                     <---------ZAT18   <---------ANAC58           --------->ATHB12<--- ------GLK1(2)              ------->TEIL<---------ARR14(2)                      <---------YAB1  -----   attccgattagattggagagaaatggaacgtagcttagtgcaaaacctctgcattgtcgtctccaaggggaagaacaattttctgattgaaatgcgaatt  18503500                                                              ----------->GT1                                                              <------MYB83                             <----------DOF2                  <------MYB46(1)                        ---------->DOF2                <---------ANAC58           *TSS <---------ANAC58                       <---------ANAC46                          <---  ---------->DOF2   ----------->HVH21                  <---------ANAC58--------->YAB1<--------------- ---------YAB1  <---------ANAC58                 --------->ARR11(3)    <------ZmHOX2a(1) <-----------GT1 ------AHL20(2) --------->ALFIN1               --------->ICU4--------->MYB59--------->ZAT6    <------ ---->AHL20(2)--------->ALFIN1      <----------DOF2  <---------YAB1   <---------YAB1<----------DOF2   ttataaaagagaagaagtgtgtgtgacaaagctttggggtttttgggaaatgattttgagtgtttggttattaggataactctattcttttttactcttt  18503600           <---------ICU4          --------->ICU4        --------->YAB1                                 --------->ANAC58   <---------ANAC58              ----------->GT1       <----------ID1   <---------ANAC58        --------->YAB1              --------->ANAC58------>MYB46(1) <-----------GT1          <---------YAB1 <---------ARR11(3)            ------>MYB83<XXXXXXXXXXXXXXXXX ---------------------ANAC81  <---------ICU4<----------DOF2          <---------MYB46(2) ---------ANAC81  <----------DOF2--------->YAB1      ---------->DOF2 <---------MYB59 ----DOF2 <---------YAB1<----------DOF2  --------->ARR11(3)   --------->AHL20(2) ---------->ID1   ttttttcttgtcatcattctcttttactttgataatggtaaaatgtctttgggaaaaaagccaaaaaaataccaaactaatttgttttttttttgtaggc  18503700                                                                           --------->ARR14(2)                                                                           <---------ARR11(3)                                                                          --------->GLK1(1)                                                                          <---------GLK1(1)                                                                    --------->ARR14(2)                                                                    <---------ARR14(2)                                                                  --------->REM1(2)                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                --------->LBD16  --------->ANAC58                                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                --------->At5g28300                                      --------->AHL20(2)       <---------ANAC46  --------->ANAC58                                  --------->AHL20(2)           ----------->GT1   --------->ANAC46                                  <---------AHL20(2)        --------->ANAC46  --------->TOE1(2)                                 --------->AHL20(2)         --------->ANAC58 ------>ZmHOX2a(2)                          <---------AHL20(2)               xxxxxxxxxxxxxxxx>smallRNA(s)                       --------->AHL20(2)                --------->ARR14(2)--------->ARR11(3)             --------->ZAT18  --------->YAB1         xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <---------WRKY12  <---------ARR11(3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <---------WRKY38(1)  <---------YAB1<-----------GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  --------->ZAT18      --------->AHL20(1)    ------>MYB83<---------ARR14(2)<---------ARR14(2)  <----------ID1       <---------AHL20(1)    ------>MYB46(1)--------->ANAC58<------ZmHOX2a(2) XXXXMIR173  <---------ZAT18 <---------YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------TOE1(2)  --   gaaggggacaacgagtccccttcaaaatattattataaaattaaaccaaattacaaacaaatacgccgtgaatacgagatcccacgatagtcttcatcaa  18503800                                                                                    <xxxxxxxxxxxxxxxx                                                                                  ---------->DOF2                                                                                  xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                --------->LBD16                                                                               --------->ANAC58                                                                               --------->ANAC46                                                                             ------>MYB83 xxxxxxxxxxx                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                      --------->AHL20(2)   --------->AtMYB61        -                                         --------->TOE1(3)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                         --------------->AGL15 --------->ATHB51--------->ANAC58------                                         ------->GAMYB<---------AHL20(2)  --------->MYB46(3)  <xxxxxx                                         <---------------AGL15 <--------HAHB4<xxxxxxxxxxxxxxxxsmallRNA(s)          <-------TEIL   --------->GLK1(2)   ---------->DOF2   <---------ICU4------>MYB46(1)  -------         --------->CCA1(2)              <-----------------AGL1--------->ICU4<xxxxxxxxxxxxxxxxsmallRNA(i) -------->DOF2          <---------GLK1(2)--------->TOE2(3) <-------TEIL <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   aaaaagatgagatacaatccgaacaagaatctagtaaatgcaaccctaaaaggcataaaaatgcataattagccaaaccatccgcaaagtgattcgcctc  18503900                               <----------DOF2                            <---------ATHB12                           ------>MYB46(1)                         --------->AtMYB61                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        <---------ATHB12                        --------->MYB46(3)                        <---------MYB55(2)                       ------>MYB46(1)                            --------->ANAC58                       -------->P --------->YAB1                  --------->ANAC58                       --------->ANAC58                           <----------ID1                       ------>MYB83                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                       --------->ANAC58                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     <---------MYB59                           <------ZmHOX2a(1)        <---------ARR14(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <---------ZAT18                <---------GLK1(1) xxxsmallRNA(se3)    <---------MYB111(1)                --------->ZAT18                --------->GLK1(1) xxxxxxxxxxxx>smallRNA(si3)------>MYB83  --------->ANAC58 <---------ZAT2               <----------TaMYB80 -------->ARR14(2)   --------->MYB46(3)  --------->ANAC58 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -------- >NtERF2             --------->AtMYB61 ---------->DOF2 <---------ANAC58                <---------CCA1(2) xxxxxxxxxxxxxxxxxsmallRNA(se3)------>ZmHOX2a(1)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)--------->ARR14(2) -->DEAR3(1)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)<---------ANAC58   >>>>>>>>>NAM---------->TaMYB80   cctatacacatgagacaattggaccaaccaatcctttgataaaaagccatagcacaagcgtgctaggaacgacaagggatgagtatcgcatatccccgtc  18504000  Previous    Next  AGI:  At5g45590.1    Description:  structural constituent of ribosome. similar to Os10g0579500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065508.1); similar to unknown protein [Oryza sativa] (GB:AAG46165.1); contains InterPro domain Ribosomal protein L35; (InterPro:IPR001706) Range:  from: 18501677    to: 18503511    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g45595.1    Description:  transposable element gene. similar to reverse transcriptase-related [Arabidopsis thaliana] (TAIR:AT5G26642.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE89875.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) Range:  from: 18503902    to: 18504566    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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