Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         --------->GLK1(2)                                       <---------ARR14(2)                                       --------->ARR14(2)                                   --------->YAB1         <---------YAB1              <---------ICU4                                  --------->At4g35610   <---------ICU4            <---------MYB52(1)                                --------->YAB1          --------->YAB1           <-----------HVH21                                <---------ICU4          <xxxxxxxxxxxxxxxxsmallRNA(s) --------->At4g35610                             --------->YAB1            --------->ICU4            <-----------TGA1                         <---------ARR11(3)    <---------ANAC58                 --------->ANAC46                         --------->ARR11(3)    <---------ANAC58        --------->ARR14(2)  <xxxxxxxxx                 <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------ANAC46        <-----------ARR10 <-----------GT1 -----------RAV1(1)  ---------->DOF2  <---------GLK1(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <   ttctggtggaatcccatagaggctaaagttctcatcatcagaatctgttccgtcggaatcatcacagtaatcaaatctactcccgtcatcttcaccatct  18496300                                                    <---------WRKY12                                                   --------->DOF5.7(2)                                                  --------->TOE2(3)                                                 --------->ANAC58                                                 --------->ANAC58                                       <---------YAB1<---------DOF5.7(2)           <---------RVE1(1)      --------->YAB1 <---------ANAC55(2)                         <-------          <---------GLK1(2)       --------->ZAT6 --------->ANAC46                            --------          --------->ARR11(3)--------->ANAC58    <-----------STF1                     <---------ARR14(2) xxxxxxxxxxxxxxsmallRNA(si3)--------->ANAC58  --------->ARR14(2)                     --------->ARR14(2) ---------At4g35610      --------->MYB46(3)   <---------ARR14(2)                  <---------ANAC46<--   tcaactgcttcagatttttttctttcaacaacgctatcagtatgagtgaatacgtcaacgttttcaacgttttcttcgacaataccgtatacatcaactg  18496400                                     <---------ICU4                                     --------->ATHB12                                     <--------ATHB1                                     --------->YAB1                      <---------AHL20(2)                                    <---------ATHB12            <----------DOF2                                <---------YAB1                 --------->HSFB2a(1)                               --------->TOE2(3)               --------->HSFC1(2)                        <---------MYB59                        <---------HSFB2a(1)                        --------->TOE2(3)                      <---------HSFC1(2)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------ARR11(3)        <---------HSFB2a(2)   --------->YAB1------>ZmHOX2a(1)<<<<<<<ZML2 --------->AHL20(2)       <--        --------->HSFB2a(2)  <---------ATHB12             --------->HSFC1(1)                      xxx --At4g35610       <---------At4g35610 --------->GLK1(1)  <---------HSFB2a(2)                -------- ->At4g35610       --------->ZAT2   --------->ICU4   <-------TEIL     <----------DOF2        xxxxxxxx --------DOF2      --------->At4g35610 <---------GLK1(1)  --------->HSFB2a(2)       ---------->DOF2   cttttgtcttcggcaagtcgctgctacctaaatcatcaatgatttcctcttcatattcatctagaactttctcttttaattcaacacaaagtcgaacagt  18496500                                                                                            <------ZmHOX2a(2)                                                                                           --------->ARR14(2)                                                                   --------->At4g35610     <---------ARR14(3)                                                               --------->ARR11(3)          <---------ARR11(3)                                                               <---------ARR11(3)          <---------ARR14(2)                                                               <-----------ARR10           --------->ARR11(3)                                                               --------->GLK1(2)           --------->ARR14(3)                                                <---------ICU4 --------->ARR14(2)       --------->HSFB2a(2)                                               <---------ATHB12<---------ARR14(2)       <---------HSFB2a(2)                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        <---------ANAC46                                           <---------YAB1   <---------ANAC58           <---------LBD16                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<----------DOF2 <---------YAB1                          <-----------GT1    <---------ANAC46  <---------ANAC58 -------YAB1                          <---------ICU4        <---------ANAC58  <---------ANAC46 xxxxxxxxxxxxx>smallRNA(i)            --------->YAB1     --------->ALFIN1     <---------ANAC58 ->ZAT6 <---------MYB52(1)            <--------HAHB4 <-----------RAV1(2)   <---------WOX13(1)------>ZmHOX2a(2) xxxxxxxxxxxxxxx>smallRNA(fl3)       <---------YAB1 <---------ZAT14<---------At4g35610<---------LBD16   atcattcttcgtttgccccaaataagactgaaactgtctattattaccaatgagtacaggtggagtatctgctggtaattgctttgatttcgggatcttg  18496600                                                                     <---------YAB1                                                                   <---------ICU4                  --                                                                   --------->YAB1                  --                                                                  <---------YAB1                   --                                                                --------->YAB1                  -----                                          ------>ZmHOX2a(1)     <---------ICU4                  -----                           --------->HSFB2a(2)          <---------AtLEC2                        <----                           <---------HSFB2a(2) --------->ANAC46--------->ICU4           --------->TOE2(3)                           --------------->AGL15        *TSS   <---------ATHB12         --------->TOE1(3)   taactcaaaataacttcaaatacactcttctcgatattgtaatcctcatacaccatttggatgaaatcatcataactggtttgactattaccttcaagta  18496700                                                                           <---------ANAC58                                                                           --------->ANAC55(2)                                                                           <---------ANAC58       <----------DOF2                                                     <---------ANAC55(2)      <---------DAG2                                            --------->ANAC46 ------->ANAC58       ------->GAMYB                           <---------ALFIN1 ------->ANAC46       --------->TOE2(3)                   <---------At5g28300    ------>ZmHOX2a(2) ------->ANAC58       ----------->RAV1(1)                <-----------GT1 <-----------GT1 ---->ZAT18          --------->MYB46(3)         <---------ARR14(2)--------->ANAC58                 -- ---->ZAT14         -------->P                  --------->ARR14(2)--------->ANAC46               ---- ---TEIL           --------->WOX13(1)          <----------TaMYB80 --------->ANAC58      ---------->DOF2   cacgacaaccttttgtactatcaaccacaaaaatccatctcgttttctcatatacccatttaccacacacgagaattacttgatccataccaaagagaga  18496800                                                --------->HSFB2a(2)                                               ------>ZmHOX2a(2)                                              <------ZmHOX2a(2)                                             <---------ARR14(3)                                   <--                                             --------->ARR14(3)                                  <xxx                                             --------->ARR11(3)                                <-----                                             <---------AGP1                                    <-----                                        <---------MYB52(2)                                    <------                                   --------->ANAC58                                          <-------                                   --------->ANAC58                                        <------MYB83       <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------ARR14(2)        <---------ANAC46    <------MYB46(1)       --------->MYB52(1)       <---------REM1(1)                 --------->MYB52(1)      --------->MYB59 --------->GT1             ---------->DOF2   <---------ARR11(3)  --------->ICU4           --------->MYB111(1) ----->GLK1(2)          <-----------HVH21    --------->ARR14(2)--------->YAB1        ----------->ARR10   atcgataaacaagggaatcgaatttgtgtcaaagatgaagcaactaagatctcgaataggtagaagaataatggattgtattgaaattagatttggtagg  18496900                                                                         <---------WRKY18(1)                                                                      <---------ANAC58                                                                      <---------ANAC58                                                                  --------->KAN4(2)                                                                 <---------KAN4(1)                                                                 --------->KAN4(1)                                                                 <----------TaMYB80                                                                 <---------HSFB2a(1)                                                                 --------->HSFB2a(1)                                                                <---------ARR14(2)                                                           <---------ANAC46                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                           <---------ANAC55(2)                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                  <---------STY1(1)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)  --------->HSFB2a(2)                             --------->STY1(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <---------HSFB2a(2)                            <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---------HVH21                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxsmallRNA(i)                    <---------GLK1(1)  <---------KAN4(2) -MYB46(1)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->ARR14(2)           <------- -MYB83             <<<<<<<<<<<<<<<<<LFY     --------->GLK1(1)  ---------->TaMYB80       --------->ICU4 ---DEAR3(1)       <----------ID1     --------->ATHB12 <xxxxxxxxxxxxxxxsmallRNA(le3)----------->GT1 -P        ---------->DOF2           <---------YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxx   cgttacagaagaaaaaagaaaacgacaatggcagtttttttcattggaaaccctaggcgttacgagaatattccttgactcaaatatggtaatatttcgg  18497000                                                                                                   <-                                                                                                  <--                                                                                               <-----                                                                                               ------                                                                                              -------                                                                                              <------                                                                                              -------                                                                                              <------                                                                                              xxxxxxx                                                                                             xxxxxxxx                                                                                            xxxxxxxxx                ---------->DOF2                                                            xxxxxxxxxx         <------NtERF2                                                             --------->YAB1 <--       <---------ETT(2)                                                   >>>>>>>>>MYB98  <xxxxxxxxxx     <-----------HVH21                                                  <-----------GT1  ----------->GT1    <-----------RAV1(1)                                              --------->ARR14(2)  --------->LBD16 --------->ARR11(3)                                                --------->LBD16<---------ATHB12--- --------->GLK1(2)                                               <---------LBD16  <<<<<<<<<ARR2------ <---------ARR11(3)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)-- --LBD16------>NtERF2  <-----------HVH21                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xx xxxxxxxxxx>smallRNA(si3)--------->YAB1            --------->AHL20(2)<---------ARR14(2)<---------LBD16   aaaaatctgtcgcctaataaaagtctgtcataacgttttcaaaaaaaaaaaaaaaaaatcaagtcaaaccggatttaacatacaatcaaaccggaaataa  18497100           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------AHL20(2) -------AHL20(2) ----AHL20(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --->AHL20(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -->AHL20(2)<---------STY1(2) ---AHL20(2)--------->STY1(2)                                                                       < -->ICU4 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                  <---------YAB1     <x ---ATHB51xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(le3)                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxx>smallRNA(si3)                                   <---------------AGL15    <---------TOE2(3) xxxxxxxxxxxxxx>smallRNA(si3)                                   --------------->AGL15  ---------->DOF2 xxxxxxxxxxxxx>smallRNA(le3)                                    ====================================MADS_MADS -------AHL20(1)                                           xxxxxxxxxxxxxxxxx>smallRNA(le3)    ------- xxxxxxxxxxxxxsmallRNA(si3)        <---------AHL20(1)     --------->ARR14(2) <---------MYB52(1)<----- ------>AHL20(2)  <---------AHL20(2)                    <---------AHL20(2)  <-------GAMYB--------->DAG2 --->AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(i)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <xxxxxxxxxxxxxxx ------->AHL20(2)<---------ATHB12  --------->AHL20(2)  --------->AHL20(2)  ----------->GT1----------- xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------AHL20(2)--------->YAB1  ---------->DOF2--------------->AGL15   tttaattgagggctagctaataaatctcatataacaaaaaatttcgaaattttaaaaataaatctgccaaaaaaagtctgttattactaaaaaggttatt  18497200  Previous    Next  AGI:  At5g45576.1    Description:  transposable element gene. Mutator-like transposase family, has a 3.0e-84 P-value blast match to Q9S9L1 /206-367 Pfam PF03108 MuDR family transposase (MuDr-element domain) Range:  from: 18494223    to: 18496656    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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