Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          <---------YAB1                        <---------AHL20(2)                    <---------YAB1                   <---------AHL20(1)                   <---------AHL20(2)                 <---------YAB1               <---------AHL20(2)               <---------ICU4                                                        <----------ID1               -------->ATHB1                                                ----------->GT1               -------->HAHB4                                             <--------ATHB1               --------->ATHB51                                           -------->HAHB4               <--------HAHB4                                             <---------ICU4              --------->ICU4                                              --------->ATHB51              <---------ATHB12                                           <---------ATHB51              <---------YAB1                                             <---------ATHB12           --------->ICU4                         <---------AHL20(2)     --------->ICU4 ------AHL20(2)--------->YAB1           --------->YAB1                   --------->AHL20(2)        -- ----RVE1(1)  <---------ATHB51         <---------YAB1 <---------ANAC46   <---------AHL20(2) ---------   ttttttttgagccctaattattatttttaattgtttttgttatgaaaactatttttttgtgtaatttgacaacaaataattgttaaaaaaacaaaaaaat  18461500                                                              <---------YAB1                                                             <---------AHL20(1)                                                             <---------ARR11(3)                                                             --------->ARR11(3)                                                             --------->AHL20(1)                                                           --------->AHL20(1)                                                   --------->AHL20(2)                               x                                                   <---------AHL20(2)                               <                                                   --------->AHL20(1)      <---------YAB1           -                                               <---------AHL20(2)         <---------AHL20(2)        -                                      <---------YAB1       <---------AHL20(1)                       -   --------->AHL20(2)                --------->ARR11(3)    <---------AHL20(2)          <---------HSFC1(2) --------->GT1                       <---------ARR11(3) --------->AHL20(2)--------->AHL20(2)<xxxxxxxx >AHL20(2)                     <-----------GT1--------->AHL20(2)       ----------->GT1------->TEIL xx   acagataaattcttctaaattcttttgaacatttttcaatatcatatataaaattttttaaaatatttttgaatattaaaatagtatgaaacttcgatat  18461600                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                <---------TOE2(3)                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <---------YAB1     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         --------->ICU4    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       --------->YAB1      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <---------YAB1      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    xxxxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                    --------->At5g28300          <---------MYB46(3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    ----------->GT1           --------->ATHB51 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               --------->ANAC55(2)            <---------AHL20(2) -------->ANAC46        <---------YAB1             <---------ANAC55(2)            <---------YAB1 -------->ANAC58      --------->YAB1        <----------DOF2           --------->AHL20(2)        <---- -------->ANAC58xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)----------->HVH21<---------AHL20(2)        ----- xxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <----------DOF2--------->ATHB12 < xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ------->TEIL    ------   acacgcttataatgaatagtccaattgtcattttaagaattagacactttaatatgtgactgtaaaaactctttaaatatgtatattattggttagattt  18461700                             <---------AHL20(2)                            --------->AHL20(1)                            <---------AHL20(1)                           <---------AHL20(2)                         --------->AHL20(2)          ---------->DOF2                         <---------AHL20(2)         --------->AHL20(2)                       <---------AHL20(2)           <---------AHL20(2)                       --------->AHL20(2)      --------->AHL20(1)                     <---------AHL20(2)        <---------AHL20(2)                  <---------ANAC58  <---------ANAC55(2)--------->AHL20(2)        <---------AHL20(1)           --------->AHL20(2) -----AHL20(2)     <---------AHL20(2)          --------->AHL20(2)           <---------AHL20(2) ---->AHL20(2)   <---------AHL20(2)           --------->AHL20(2)           --------->YAB1 ---------AHL20(2) --------->AHL20(2)         <---------AHL20(2)<---------YAB1     <---------ANAC58 --->AHL20(2)    --------->AHL20(2)     ----------->GT1       ----------->GT1<---------AHL20(2)    --   aattacatgagtttgatatatatatatatatatatttgcaaattgaaaataaatttaaagaaaattgttatttagaattttaatttcttacgagaaaaat  18461800                                                                   <---------ICU4                                                                   --------->ATHB12                                                                  <---------YAB1                                                              ------->MYC3                                                              <-------MYC3                                                         --------->ANAC58            <-----------GT1                        --------->AHL20(2)      --------->AHL20(2)                    ----------->GT1 ------->TEIL      <---------AHL20(2)           <---------STY1(2)     <---------ANAC55(2)           ---------->DOF2     <---------AHL20(2)       <-----------HVH21    <---------AHL20(2)<---------YAB1 *TSS     --------->AHL20(2)   <-----------------AGL1   ----------->TBP--------->ICU4  ----------->GT1     <---------AHL20(1) <---------ALFIN1  ---------->DOF2--------->ANAC58         <---------YAB1   -- ---->ZmHOX2a(1) ----------->RAV1(2)    <------ZmHOX2a(1)--------->ANAC46      --------->ICU4    ----   cctataatttaattttagcgcctggctcaccccgtctggctaggaaaagaaatataaatacgcatgtgattattagaagaaatgatgttaaaagagagag  18461900   <-------TEIL  --------->ARR14(1)  --------->CCA1(2) <---------ARR14(2)                                                 <---------At4g35610 --------->ARR14(2)                                  <---------MYB46(3)                  ---------->DOF2 --------->ARR11(1)                                 <---------AtMYB61          ---------->DOF2 --------->ARR10      --------->DAG2          --------->DAG2        --------->At4g35610 XXXXXXXXXXXXX ------>DOF2         ---------->DOF2         ---------->DOF2     <----------DOF2   --------->ARR11(3)   aaagatacgagagaaaatggagagaaagtgagagagagagagagagataaagcagaggttgacttcgctttgctgagaaggcaaagagctcgaaagagag  18462000                                             ------>NtERF2                                             <------NtERF2                                             --------->ATERF1(1)                                            <---------SPL7                                            ------>NtERF2                                            <---------RAP2.3(1)                                           <---------ANAC58                                           <---------DREB2C(2)                                           <---------RAP2.6(2)                                           <---------RRTF1(3)                                           <---------RRTF1(2)                                           <---------RAP2.3(2)                                           --------->ATERF1(2)                                           <---------DEAR3(1)                                           <---------ANAC58                              ------>ZmHOX2a(2)          <------ZmHOX2a(1)                              ==================================HOX2a_HOX2a                            --------->ARR14(2)   ----------->HVH21               --------->DEAR3(1)          <---------RAP2.3(3)              --------->At4g35610         --------->RAP2.6(3)             <---------YAB1         --------->YAB1     <---------ARR14(2)  <------NtERF2        ----------->GT1     --------->ZAT6       ----------->HVH21<---------ATERF1(2)     <-----------RAV1(2) XXXXXXXX>MIR2936    ------->TEIL         --------->ATERF1(1)   <-----------GT1                 <----   aagactaactctcatcagcgacgaatgtctgatccgttgaagatggcggccgagacggaggagattaaaccaggttactattctctctgtccctctctct  18462100                                                       <---------ARR11(3)                                                       --------->ARR11(3)                                                       <---------AHL20(1)                                                      <---------CCA1(2)                                        --------->ARR14(3)                                        --------->ARR11(3)                                        <---------ARR14(3)                    <---------ARR14(2)  <---------ARR11(3)            --------->HSFB2a(2)                    --------->ARR11(3)  --------->ARR14(2)         ------->TEIL               <------                  ------->TEIL          <---------ARR14(2)        <---------CCA1(2)  --------->ARR11(3)     <----------DOF2--------->ARR14(2) --------->RVE1(1)        --------->ANAC55(2)  <---------ARR11(3) ------DOF2    <---------YAB1          --------->CCA1(1)  <----------DOF2       ------>ZmHOX2a(2) <--   ttctctgctttcgatctatgaatatactgaaatttgttagaatatcttgtaaaccaatatctttttatgtatctcgaattgatctaagaacttgttgtgt  18462200        <----------DOF2                                                    <----------DOF2      ----------------->AGL1   --------->DAG2                            ------>ZmHOX2a(1)      ----------------->AG     <---------TOE1(3)                   --------->ARR11(3)     <-----------------AGL1    <---------TOE2(3)              <---------ARR11(3)     ---------->ID1        <---------ICU4                   --------->ANAC58                  <------    <-----------GT1        --------->YAB1                   --------->ANAC58                 -------- ---ANAC46                <---------ATHB12     <---------YAB1 --------->AHL20(2)<----------DOF2 --------DOF2             <---------YAB1     <---------At4g35610   <-----------GT1         ------->TEIL   cttttttttccttttgggtcaaaaactaatcataaggttgtctagagagatgattcaagaacaagaaattatctcctctttactttgaaaacgaatttta  18462300                                                                        <----------DOF2                                                                        <---------DAG2                                                                    --------->WRKY12     <---------YAB1                                                <---------WOX13(1)   <---------ICU4          ----------->GT1                        <-------GAMYB  --------->ICU4    ----------->GT1                              <------MYB46(1) ---AHL20(2)        <----------ID1            <---------YAB1     <------MYB83                    <--- ->AHL20(2)       --------->MYB52(1)        <---------At4g35610 --------->MYB59          ---------->ID1   tatacttattagtgaaggaataacgaaaaatgtgaatttctcaggctgatgatatatagaaccaatttggttgacttttttgactgaatttgtttttttt  18462400  Previous    Next  AGI:  At5g45510.1    Description:  leucine-rich repeat family protein. Identical to Probable disease resistance protein At5g45510 [Arabidopsis Thaliana] (GB:Q8VZC7;GB:Q9FHI5); similar to mob1/phocein family protein [Arabidopsis thaliana] (TAIR:AT4G19050.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ65894.1); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 18461884    to: 18466673    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version