Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              ------>ZmHOX2a(1)                           --------->TOE1(2)                          ------>ZmHOX2a(2)                        <---------ARR11(3)                        --------->ARR11(3)            --------->At4g35610            <---------At4g35610  ------>ZmHOX2a(2)   <---------ATHB12       <---------YAB1   --------->TOE2(3)  <---------KAN4(2)  =================================HOX2a_HOX2a           --------->AHL20(2)     --------->YAB1   ttgatccattttttagctgagcaaatgatcctgagagattgaaattgatgatcaaacgaataaatctcaaaacttgattcaagaataaacaaatccaaga  18420600                                                            <-------TEIL         <---------ARR14(2)                                                         --------->At4g35610     --------->ARR11(1)                                                         <---------At4g35610     <---------GLK1(2)                                                    <----------DOF2              --------->ARR14(2)           --------->AHL20(2)                    --------->ANAC58               <------ZmHOX2a(1)    ---------->DOF2                              --------->ANAC58             <---------TOE2(3)   tgaaatcaaagaataaaaaatcgaaatcaacattcgaatcaaaccgaaaacaagctttgagcttcattttctgaaaattttaggattcggcaaaaaaaaa  18420700                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                           ----------                                                                                         --------->LBD16                                                                                        --------->ANAC46                                                                                        --------->LBD16                                                                                        --------->ANAC58                                                                                        --------->ANAC55(2)                                                                                        --------->ANAC58                        --------->TOE2(3)                                              <---------LBD16                   --------->ANAC46               ------>NtERF2                       ------>ZmHOX2a(2)                  --------->TOE1(3)               --------->LBD16                    <------ZmHOX2a(2)                  --------->TOE2(3)              --------->ANAC46                   <---------ARR11(3)               <-----------GT1                --------->ARR14(2)                    <---------ARR14(2)            <---------ICU4              ------->TEIL                                --------->ARR14(2)           <---------AHL20(2)        <---------YAB1         --------->TOE1(3)       --------->ARR11(3)           --------->AHL20(1)  --------->TOE1(2)<---------LBD16                    --------->GLK1(1)           --------->AHL20(2)<---------------AtSPL8         --------->TOE2(3)      <---------GLK1(1)          --------->AHL20(2) --------------->AtSPL3   --------->AtLEC2   ----------->GT1<---------ANAC55(2)   aaaccaaaaaaaaaaaattaccctaaacttaaacgtactatgaatcaaattccgccatgaaaccctaaactcgaatggaaaatagagatcccgcaacaat  18420800                                     ------>ZmHOX2a(2)                                    <------ZmHOX2a(2)                                   --------->ARR14(2)                                   --------->ARR11(3)                          <---------AtLEC2                       XXXXXXXXXXXXXXXXXXXX>MIR2111A/B                     <---------ARR11(3)                                                    <---------              --------->ZAT2       <---------AGP1                                         ------>ZmHOX2a(2)              --------->At4g35610  --------->AGP1                                        <---------RVE1(1)              <---------At4g35610  <---------ARR14(2)                                    <------ZmHOX2a(2)  <---------TOE1(2)  --------->ARR11(3)                                                 <---------ARR11(3) --------ANAC58      --------->ARR14(2)                              <---------ANAC55(2)--------->ARR11(3) --------ANAC46      --------->GLK1(2)                    <---------AHL20(2)            --------->AGP1 --------ANAC58      <---------ARR14(2)      <---------YAB1        --------->YAB1      --------->GLK1(1) ->RAV1(1)    <---------ZAT2       <---------ARR11(3)----------->GT1 ----------->GT1   <---------GLK1(1)   ttcgtatgaaaaactcagcagaaaatctgcatcgcaagatctattttgttatagaatgaaaaaattgaatcatgtgaaacctagagaagagatctttttc  18420900                                                                                 <------NtERF2                                                                                ------>NtERF2                                                                                --------->LBD16                                                                               <---------ATERF1(2)                                                                               --------->ATERF1(2)                                                                        <---------HSFC1(2)                                                                        --------->HSFB2a(1)                                                                        <---------HSFB2a(1)                                                                        --------->HSFC1(2)                                                                       <-----------ARR10                                                                       <---------KAN4(2)                                                                 --------------------->WRI1                                                                --------->At4g35610                                     ----------->GT1            <---------At4g35610    --------->ANAC58                --------->YAB1           <---------ATHB12  --------->DEAR3(1)    --------->ANAC46         --------->YAB1             --------->GLK1(2)     <---------LBD16    --------->ANAC58        <---------YAB1     ---------->DOF2  ----------->RAV1(2)   <---------ATHB12 -DOF2               --------->GLK1(2)     <----------ID1  --------->WOX13(1)<---------RAP2.3(1)   gaatacatgccagttttatgaagaatcgatatgataaatcagaaaaaaacaaagagagaatcaatcacctgagaattttcgccggcaaatgaattgcaga  18421000                                    --------->TGA1a                                    <---------ANAC58                        ----------->GT1                        <---------ANAC46                       --------->ALFIN1                                   <------MYB46(1)                     --------->ALFIN1           --------->GLK1(2)         <------MYB83                    <-------MYC3    <---------TGA1a           --------->MYB52(1)   --------->LBD16           <---------YAB1  *TSS     <---------ANAC58<------------CBF      <---------DEAR3(2)   <-----        <----------DOF2<---------AtMYB61 <----------DOF2      <---------At5g28300 <---------ANAC55(2)        ======================================bZIP_DOF        <---------DOF5.7(2) ----------->GT1  -- <---------ANAC46   ------->MYC3    ================bZIP_DOF <-----------GT1 ---------->DOF2<--------   gtagcttagacttttgataaaacgtgtggtgaacacagacgtgctttgagtttctattgagagttaccggtttagtcggtaaacccgtgaaactcttttt  18421100                                                      <---------MYB46(3)                                              <-------GAMYB                                             <---------MYB46(3)                                            --------->ALFIN1                                           <-------MYC2                                           ------->MYC2                                           <-------PIF5                                           ------->PIF5                                           ------->MYC4                                           <-------MYC4                                           ------->MYC3                                           ------->PIF4<------MYB46(1)                        --------->WRKY38(1)<-------MYC3<---------ANAC46                           ---                        <---------ZAT18    <-------PIF4<------MYB83                               <--                        --------->WRKY12  --------->TGA1a                                         ---                --------->LBD16           ============MYC_MYB         --------->MYB46(3)         ----           --------->GLK1(1)              <---------O2--------->MYB55(2)                         <---      ----------->GT1 <---------At4g35610 --------->O2--------->MYB46(2)                       ------ ------TBP <---------GLK1(1)              <---------TGA1a--------->ALFIN1              <-----------RAV1(1) --------->TBP<---------LBD16            ------------>OsbHLH66 --------->GLK1(2)     <------MYB83<--- --DOF2<---------MYB52(1)          <---------REM1(1)  <---------DEAR3(1)             <------MYB46(1)   tataaaaccggtgatttccggtttagttgactctgtaatgtagcacgtggttgtgttcggtggagaaactgaaccacgaagactatttggtgttggataa  18421200                                                                         <---------MYB46(3)                                                                         --------->MYB111(2)                                                                         --------->MYB52(2)                                                                         --------->MYB55(2)                                                                        <---------MYB55(1)                                                                        <--------P                                                                       <-------GAMYB                                                                     <---------ANAC58                                                                     <---------RAP2.6(2)      ----------------------->TaNAC69(2)                             <---------ANAC58     ------>ZmHOX2a(2)    --------->YAB1                            <---------LBD16 ----->HAHB4              <---------ICU4                       <---------ANAC58 -------ICU4        <-----------TGA1                           <---------ANAC58 ------>YAB1       --------->YAB1              <---------TOE2(3)<----------DOF2 ----->ICU4 <---------ANAC46              <---------MYB46(3)<--------P<---------MYB46(3) ------ATHB51 <---------MYB52(1)       --------->MYB52(1) <---------ANAC58                  <-------- --->YAB1   <---------ANAC58         ------>ZmHOX2a(2)    <---------ANAC46  <---------MYB46(3) ------YAB1 <---------ANAC58         --------->MYB46(3)   <---------ANAC58<-------GAMYB     ---------   taatggatcgcatgccgtttatcgtcactaattatctgatccaacggttgagatttagtggggtagcttttgcggttgttgttgaagacttgtagtgata  18421300                                                                    <---------AHL20(1)                                                                    --------->AHL20(1)              <                                                             <----------DOF2        --------->AHL20(2)                                                    --------->AHL20(2)              <---------AHL20(2)              <---------AHL20(2)                   <---------AHL20(1)               --------->AHL20(1)            <---------YAB1                         <---------ARR11(3)            --------->YAB1  <--- -ZAT6<---------TOE2(3)--------->GLK1(2)           --------->ARR11(3)<---------AHL20(2)        <----- -->GT1    --------->AHL20(2)                 <---------TOE2(3)  --------->AHL20(2) <---------AHL20(1)   aaaatgttaagaatattatatgaaaattctagtttggaattttggattaagaatatatatagtctttttatatatttccctagtaataaaataggtgctc  18421400                                                                             <<<<<<<<<MYB98           <-------TEIL                                                    <---------YAB1         <---------ARR14(2)                                            <---------DAG2         --------->ARR14(2)                                        <---------CCA1(2)    --------->ALFIN1                                             --------->YAB1 ---------LBD16  <---------GLK1(2)                           --------->ARR11(3) -------DOF2    <---------At4g35610       ---------->DOF2    <---------ARR11(3)<---------AHL20(2) -----DOF2--------->CCA1(2)  ----------->GT1          ---------->DOF2  <----------DOF2            <--   tttggggaggggatacacagatgctcaagtcttgtaattcgaatcaaagcttgaagtaaagaagaactcataactttatgttaaattctttggcatattg  18421500  Previous    Next  AGI:  At5g45410.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G25030.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G25030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66717.1) Range:  from: 18419135    to: 18421027    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g45420.1    Description:  myb family transcription factor. similar to DNAJ heat shock N-terminal domain-containing protein / cell division protein-related [Arabidopsis thaliana] (TAIR:AT3G11450.1); similar to hypothetical protein OsI_026897 [Oryza sativa (indica cultivar-group)] (GB:EAZ05665.1); contains InterPro domain Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778) Range:  from: 18421296    to: 18423833    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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