Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      <---------ICU4                --------->TOE1(3)                                <---------ICU4                --------->TOE2(3)     <---------YAB1            ------>ZmHOX2a(1)               --------->At4g35610   <---------AHL20(1)        --------->TOE2(3)               <---------At4g35610   <---------AHL20(2)      ---------->ID1            <---------AHL20(2)           --------->At5g28300     <---------YAB1           <-----------GT1           <---------AHL20(2)        <---------LBD16         <---------MYB52(1)      <---------CCA1(1)             --------->AHL20(2)  --------->HSFB2a(1)          --------->LBD16         <---------ARR11(3)          <---------ICU4  <---------HSFB2a(1)        <---------LBD16           --------->ARR11(3)      <-----------GT1  --------->HSFC1(2)    --------->AHL20(2)             <---------GLK1(2)   --------->AHL20(2)  <---------HSFC1(2)  --------->TOE2(3)  <-----------GT1<---------RVE1(1)  <---------AHL20(2)   aagaagcttctacggtaagcttaacattaattccggtattatttttcaacttgaaaagattttttcctcattactacttaattactcattaatttggcat  18415800          --------->MYB59         <-----------GT1       <---------YAB1         <---------AHL20(2)     <---------ICU4           --------->AHL20(2)                                 --------->TOE2(2)<--    <---------YAB1           --------->AHL20(2)                        --------->ATHB12    --------->ICU4    --------->ICU4  <---------GLK1(2)        --------->YAB1           <-------TEIL  <---------ANAC46   tagttcattattttggtcccttgattcttcatttatttacaacttattcatcaaacaaaaactttctacatgttcattagaaatctacgtataattttga  18415900                                                                       ----------->GT1        -------                                    <------ZmHOX2a(1)              <---------YAB1           ---------             <---------ANAC55(2)  <---------TOE2(3)           --------->YAB1                <--------   <---------ANAC55(2)         <---------AHL20(2)       <---------ANAC58                 <---------ARR14(2)   <---------ANAC46       <---------AHL20(2)            <---------ANAC58                 --------->ARR14(2) --------->MYB52(1)       --------->AHL20(2)     <----------DOF2<---------YAB1           <---------MYB52(1) -------ICU4 <---------YAB1<---------AHL20(2)  ------->TEIL <-----------TBP     ---------->DOF2   acattacggacaattacgaaaatgggattttaatttaaggagttttatgtactttggggcttatttataattcttgtaaaatcaaagacccgatatgtaa  18416000                                                                                   <---------AHL20(2)                                                                                   --------->AHL20(2)                                                                                --------->TOE2(3)                                                                               -------->ATHB1                                                                               <---------ICU4                                                                               --------->ATHB12                                                                               <--------HAHB4                                                                               --------->YAB1                                                                              --------->ICU4                                                                              <---------ATHB12                                                        <----------DOF2     --------->WOX13(1)                                                       <---------DAG2     <-------TEIL          --------->MYB52(1)                        <---------ALFIN1      ------------>CBF          - -->AHL20(2)                                     --------->PCF2       <---------TOE1(3)             < -->GT1  ----------->TGA1                      --------->At4g35610    <---------TOE2(3)  --------->TOE2(3) -ANAC55(2)            >>>>>>>ZML2          ---------->DOF2       <----------DOF2<---------YAB1------   atagtccaaaactgacgaaaacgttctagttttccatttccctctaaaaagctcccacctttacacatctttagggttcaatcattaaaatccctaattc  18416100         ------>ZmHOX2a(1)         <----------DOF2    --------->YAB1                                     --------->HSFC1(1)   <---------YAB1                                      <---------HSFC1(1)  <-----------GT1                                      --------->HSFB2a(2) <-----------GT1         ------------>CBF              <---------HSFB2a(2)                    <------ -------->AHL20(2)<---------ANAC58         ------------>CBF                                  -------- ---------AHL20(2)<---------ANAC58        --------->ANAC58               --------->ZAT14 ----------->GT1 ------>CBF    <----------DOF2            --------->ANAC58               <---------ZAT14<---------TOE2(3)   aatttatcatcctttctctttcgtcttctcaatttctgaatcaaacccaattcccttctcgaaatctagtttctctacagtgcgaaaatcgaggttaatt  18416200                   --------->At5g28300                   <------NtERF2                  <---------MYB46(3)             <---------ARR11(3)                 <---------ANAC46                --------->ARR11(3)              --------->CCA1(2)  <                 <---------DEAR3(1)    ----------->GT1                          --------->ARR14(2) --        <---------ARR14(2)  <---------LBD16  --------->YAB1                     <---------ARR14(2) --        --------->ARR14(2)----------->HVH21 --------->ICU4          <---------ANAC58               -- ------CBF       <---------DREB2C(2)  <---------ZAT6                <---------ANAC58               -- ->MYB52(2)   <---------DEAR3(1)      --------->ALFIN1           ----------->HVH21    <---------bZIP60(1)   gtgttcgtcggaaacgatggcggtgagtttgacggagggagtggtaatgaagatgttgaacggagaagtgacgagcgagacagatatgatgccagtgcta  18416300              --------->At4g35610              <---------At4g35610     ------->GAMYB                                                                              -----    <---------ANAC55(2)                                                                         <----    --------->ANAC58                                                                            <----    --------->ANAC55(2)                                                                         <----    --------->ANAC58                                                                            -----   >>>>>>>>>MYB98                                                                        <---------O2  --------->MYB52(1)                --------->YAB1                                       <---------bZIP60(2) ---------MYB52(2)               --------->REM1(1)                                       <---------TGA1a ------->ANAC58                 <-------TEIL            <---------ATHB12      --------->At4g35610   < ------->ANAC58             --------->ANAC58   --------->GLK1(2)         --------->YAB1  <---------ANAC58 ------->ANAC55(1)          --------->ANAC58 <------ZmHOX2a(1)       <---------YAB1      <---------ANAC58 ------->ANAC46        XXXXXXXXXXXXXXXXXXXX>MIR843    --------->WOX13(1)<---------YAB1----------->HVH21   caagtaacggaattgaagctgattcagagcaagcttcatcaaaatcaggaatctagcaatcgatataagtttttattatcagatgggactgacttggcag  18416400                                                           <-------GAMYB    ----------->GT1                                       <------MYB46(1)   --------->ICU4                    --------->ANAC46     ----------->GT1 ---->At4g35610                      --------->ANAC58     <------MYB83 --NtERF2                   <---------ANAC46             --------->MYB59 -----At4g35610             ----------->GT1             <-------TEIL -----ZAT2                --------->ZAT14            <---------ANAC58            <---------At4g35610 ---->ZAT2     --------->ATHB12      --------->ANAC58<---------ANAC58            --------->At4g35610 ------ZmHOX2a(1)         <---------ZAT14      <---------AHL20(2)              --------->REM1(1)   caggaatgcttaatacttcattgaacagtttagtgaatcaaggaactattcaattgggttcggttataagactcactcactacatctgcaatctcatcca  18416500                                                                 <---------------AGL15--------->ICU4                                                                 <---------YAB1     --------->YAB1                                      <---------ICU4             ====================================                                      --------->ATHB51         <---------AHL20(2)  --------->ICU4                                     --------->ICU4       <----------DOF2          <---------YAB1                                     <---------YAB1     <---------ATHB12         <---------At4g35610                                   --------->YAB1      ------>MYB46(1)       <---------AGP1     ----------->GT1              <-------TEIL         ------>MYB83    <---------TOE2(3)    <---------TOE2(2)      --------->TOE1(3)        --------->MYB46(3)---------->DOF2 <---------YAB1    <---------TOE1(2)     --------->ZAT6      ---------->DOF2 <---------AHL20(2)<---------YAB1     <-   gactcgaaggtaatattgcaatctcttaaccctagattcataattgtctaaagaaccaatcttttttatttttaaagtagttctgatgatgatgagttac  18416600                                                           ------>ZmHOX2a(1)                                                      <---------GLK1(1)                                              <---------AHL20(2)                                              <---------YAB1---------->DOF2                                             --------->AHL20(1)                                             <---------AHL20(1)    --------->TOE2(2)                                             --------->AHL20(2)    --------->TOE1(2)                                             <---------AHL20(2)   ----------->RAV1(2)             <--          <---------YAB1                    <---------------AGL15--------->GLK1(2)                ---       <---------YAB1                      <-----------------AGL3------->TEIL                  ------  <---------MYB46(3)                   ----------->GT1--------->GLK1(1)                       <------ ===========================================================MADS_MADS                         ------- -----ZmHOX2a(1)               <---------ANAC46--------->ATHB12 --------->ARR11(3)      --------->ANAC46   aggattgttgttattatgcaattggaggttattgtggagaaatgtaatataattggaaatcctaaagaacctgggcatagctcgattaatccacaacgtg  18416700  Previous    Next  AGI:  At5g45400.1    Description:  replication protein, putative. similar to DNA binding / nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G19130.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82475.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66716.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ57673.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain Replication factor-A protein 1, N-terminal; (InterPro:IPR007199); contains InterPro domain Replication factor-A, C-terminal (InterPro:IPR013955); contains InterPro domain Replication factor-a prot Range:  from: 18416217    to: 18418871    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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