Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             ----------                                                                                        --------->At5g28300                                                                 ------->TEIL      ------->GAMYB                                                        --------->YAB1            --------->MYB46(3)    <---------ANAC46                                 <----------DOF2            ----------->RAV1(1) -ANAC58                       <---------MYB52(1) --------->ARR11(3)            --------->MYB52(1) -ANAC58          ---------->DOF2                 <---------ARR11(3)         --------->ANAC46   taatttgtgtgaaatcgcatcaaagctatctccgtttgtacaatgtgttcaacatctttgataagtgtatgtattatacaaacaacagacagtgaaagtt  18413100                          <---------MYB52(1)                         <-------GAMYB                        <---------MYB46(3)                        ----------->GT1                       --------->ALFIN1                                             ------->GAMYB                  --------->MYB111(1)                         <---------AHL20(2)   --------->MYB46(3)          <---------AHL20(2)                              ----------->GT1         <---------At4g35610         <---------AHL20(2)                               <------MYB46(1)      <XXXXXXXXXXXXXXXXXXXXMIR858         --------->AHL20(2) --------->MYB52(2)            <------MYB83      <------MYB46(1)        <---------WOX13(1)<--------P<---------ARR14(2)   --------->MYB59    <------MYB83      --------->ATHB12 <---------AtMYB61       <---------AHL20(2)       --------->ATHB12     <---------YAB1<------MYB46(1)  --------->ARR14(2)   <---------AtMYB61  <---------MYB46(3)  -----     --------->ICU4<------MYB83  <---------TOE2(3)     <---------MYB52(1) <---------WOX13(1)--------- >DOF2<---------ICU4 --------->ALFIN1          --------->AHL20(2)      <---------YAB1    --------->At5g28300   tgaaaccatgattaatttagtaggtgtggttagttatggatttggctattttattcggtttggtttaattcgtttgattggttcaacagacagtgaaagt  18413200                                                  <---------ANAC58                                                  <---------ANAC58                      ------>ZmHOX2a(1) ----------->GT1                  <-----------GT1    --------->ALFIN1                                           <----             ------->MYC3            <---------REM1(1)                               <---------ZAT18- ------>GT1  <-------MYC3         <---------TOE1(3)                               <---------ANAC46 <- ->DOF2 <-----------GT1           <---------TOE2(3)                     --------->ATHB12        -----   gtgaaacaattaacacgttttttcctccgtctaattaaggtgtagtaaaattgcgaacacttgttgaattcaattgatttagttttgtgcaatttgacat  18413300                                                                 --------->ARR14(2)                                            <------MYB46(1)      <---------ARR14(2)      ----------->GT1                       <------MYB83   <---------ANAC58  <---------YAB1                           <---------AtMYB61  <---------TOE1(2) --------->AHL20(1)                        --------->MYB59 <---------ANAC58 <---------AHL20(2)                    <------MYB46(1)  <----------DOF2 <---------AHL20(1)                    <------MYB83<---------ANAC58 -----YAB1                            --------->MYB59  <---------ANAC58                --------->ANAC58 -------->AHL20(2)                    <---------AtMYB61<---------ANAC58                --------->ANAC58 --------YAB1                <---------AHL20(2)    <---------ANAC46        ------>NtERF2 ---->ICU4                   --------->AHL20(2)    <---------ANAC58     --------->RAP2.6(3)  --------   gattatatttgtaaatttgtacaataggcatttaaatggtttggtttggtttggggtgctttcgtcggattcaattcggcctggttcgcatgccaaatag  18413400                            <------MYB83                            <------MYB46(1)                           --------->MYB46(2)        ----------->HVH21                <---------MYB52(1)            --------->YAB1               <---------DEAR3(2)               --------->At5g28300       <---------TOE2(3)                --------->ETT(1)   <-------              --------->TOE1(3)       <---------ATHB12                  <-----------HVH21 --------->LBD16              --------->TOE2(3)   ------------>CBF   --------->ANAC46<---------TOE2(3)   <---------ANAC58         <---------ATHB12  --------->MYB59 --------->YAB1           --------->MYB52(1)   <---------ANAC58   --------->PCF2          --------->MYB111(1)<---------ICU4  ----------------->AGL3     <---------ANAC46   <---------ZAT18 <---------ANAC46 --------->WOX13(1)        ------------>CBF<------ZmHOX2a(2)     < ->ARR14(2)   ----------->GT1  <---------ETT(2)  <-----------GT1--------->WOX13(1)       --------->ANAC55(2)   gccagggcccaataaaccgtaacttggattaggtagaccaattaagaataataacccgacccgtttcaattaagggtcggatcactcactcccgtgtttc  18413500                                               <<<<<<<<<CBP60g                                               <<<<<<<<<SARD1                               <---------ARR14(2)     <<<<<<<<<TBF1             --------->ARR14(2)   <----------DOF2 --CCA1(2)   --------->DAG2  *TSS          --------->LBD16  <<<<<<<<<TBF1             <---------CCA1(2) ----------DOF2 --------->ALFIN1      --------->GLK1(1)  <<<<<<<<<TBF1              <---------CCA1(2)   ttctttcttcttccaaaggtgtttgttttatcaaatccacatttccccaaatttctttcttcttcttcgcttcagccatgggaaccctatctctctcatc  18413600                                                                                                  ---                                                                                                  ---                                                                                                -----                                                                                                <----                                                                                                <----                                                                                                -----                                                                                                <----                                                                                                <----                                                       <<<<<<<<<TBF1                           ------                                                --------->ARR14(2)                             ------                                                ------->TEIL                                   ------                                                <---------ARR11(1)                            ------>MYB46(1)                                              --------->LBD16             <---------ATHB12    ------>MYB83                       <---------ICU4        --------->ANAC46            ------>MYB46(1)     --------         <-----------HVH21                  <---------LBD16              ------>MYB83       ---------        --------->TOE1(3)                  ------>ZmHOX2a(1)      ------>ZmHOX2a(1)  --------->TOE1(3)        --------->TOE2(3)            <---------At4g35610         --------->TOE2(3)   --------->TOE2(3)   ttctctcaaaccttcactcgtttcatcaagactcaattcatcttcctccgcatcttcttcttcgtttcctaaaccaaacaatctctacctcaaacccacc  18413700          <---------ALFIN1       <-----------GT1 --->MYB83--------->AtMYB61                                                                        -- --->MYB46(1)                                                                                      <- ---->AtMYB61                                                                                      <- -----MYB111(2)                               <-------TEIL                                         -- -----MYB46(2)                               --------->ARR14(1)                                   --- ---->MYB46(3)                               --------->CCA1(2)                                   <--- -----MYB55(2)                              --------->ARR14(2)                                  ----- -----MYB111(1)                             <---------GLK1(2)                                  ------ --->ANAC46                                 <---------ARR14(2)      <-----------HVH21         <------ --->ANAC58                                 --------->ARR11(1)     <-----------RAV1(1)        <------ --->ANAC58                               <---------TOE2(3)        <---------REM1(1)   <---------At4g35610 ->ANAC46--------->MYB46(3)               ----------->ARR10  <---------ATHB12    <------ZmHOX2a(1)<-- >MYB46(3)--------->DEAR3(1)   --------->AtMYB61     <---------ATHB12 <---------ANAC46 --------->At4g35610   aaactcatttcaccacctctcagaacaacttcaccatcgccattgagattcgccaatgcttcaatcgagatgtcgcagacacaggaatcagctattcgcg  18413800            --------->TGA2(2)           <-----------HVH21          --------->TGA2(1)          <---------TGA1a          --------->TGA1a          <---------bZIP60(1)          <---------TGA2(1)          <---------O2          --------->O2          --------->ANAC55(2)          =============================================bZIP_DOF        <---------TGA2(2)       ----------->TGA1       ----------->HVH21     <---------At4g35610    ------->TEIL    --------->ARR14(2)    --------->GLK1(2)                                                                             <--    <---------ARR14(2)                                                                         <----- ------->At4g35610                    --------->ARR14(2)                                      <------ --------ZAT2                         ------->TEIL                                            ------- --------At4g35610                    <---------ARR14(2)                             --------->YAB1 ------->ZAT2           <---------------AGL15                                       --------->ICU4<-- ------>ARR14(2)        --------------->AGL15                                     --------------->AGL15 ---NtERF2--------->bZIP60(1)      --------->ANAC58                               <---------------AGL15 ---->LBD16<-----------TGA1        --------->ANAC58                       <---------At4g35610 <------ --->ANAC46<---------RAP2.6(3)--------->HSFB2a(2)                        <---------DEAR3(1)  -------- ---HSFB2a(2)           ==========================================================================MADS_MADS ---LBD16<-----------STF1  ------>ZmHOX2a(1)<----------DOF2           <---------ANAC58    <---------- -------ARR14(2)       <-----------------AGL1                         <---------ANAC58 <---------YAB1   gagctgaatctgacgtcatgggtcttctccttagggaacgaatcgtctttctcggtagtagtatcgacgatttcgtcgctgatgctattatgagtcagtt  18413900                              --------->CCA1(2)                              --------->GLK1(1)                             <---------ARR11(3)                         ---------->DOF2                     ---------->DOF2                                ----------->GT1 -------ANAC58    <------ZmHOX2a(2)                                <---------TOE1(2) ----MYB52(1)     --------->CCA1(2)                                <---------TOE2(2)      <----------DOF2 -GAMYB          <---------ARR14(2)                                <---------TOE1(3)<---------ANAC58 -->At4g35610    --------->ARR14(2)                               <-----------RAV1(2) <---------MYB52(1) -------ANAC58   --------->ARR11(3)                       <---------MYB46(3)        <---------ANAC58 ---At4g35610    <---------ARR11(3)                   ------>ZmHOX2a(1)           <-----------GT1 ->MYB52(2)      --------->AGP1         <----------DOF2  <---------AtMYB61     <--------------------- -HVH21      ---------->DOF2 --------->ARR11(3)     ----------->RAV1(2)       <---------YAB1   gcttctcttagatgctaaagatccaaagaaagatatcaaactctttatcaattctcctggtggttctctcaggttaaatttttatttcgtttctttgttt  18414000  Previous    Next  AGI:  At5g45380.1    Description:  sodium:solute symporter family protein. similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ55786.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66700.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ50665.1); contains InterPro domain Na+/solute symporter; (InterPro:IPR001734) Range:  from: 18408351    to: 18413121    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g45390.1    Description:  CLPP4 (Clp protease proteolytic subunit 4); endopeptidase Clp. Identical to ATP-dependent Clp protease proteolytic subunit 4, chloroplast precursor (CLPP4) [Arabidopsis Thaliana] (GB:Q94B60;GB:Q8LAN0;GB:Q9FHJ7;GB:Q9SXJ5;GB:Q9ZS78); similar to CLPP3 (Clp protease proteolytic subunit 3), endopeptidase Clp [Arabidopsis thaliana] (TAIR:AT1G66670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69954.1); contains InterPro domain Peptidase S14, ClpP; (InterPro:IPR001907) Range:  from: 18413529    to: 18415343    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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