Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        ---------->DOF2                                      --------->DAG2                   --------->TOE1(3)                                      ---------->DOF2                   --------->TOE2(3)                                   --------->TOE2(3)                   <---------MYB59                                     --------->TOE1(3)                 -------->P                                      --------->At5g28300              <---------MYB52(2)                                ----------->GT1            --------->ZAT6                                   --------->MYB52(1)         <---------ICU4             --------->TOE1(3)    --------------->AGL15         --------->YAB1             --------->TOE2(3)    <---------------AGL15 ----->GT1 <---------YAB1  ----------->RAV1(1)          ----------------->AGL2          <-----------GT1   tataaatctcatcatcactaacctaaaaccagcataaaccctaaaattttctcaaaaccccataaacggtaaaccataaagcttcaaaatttacagagtt  18375700                                                   <---------ICU4                                                   --------->YAB1                                               --------->AHL20(2)                  >>>>>>>>>RAP2.2              <---------AHL20(2)                --------->ARR11(3)            --------->AHL20(2)      --------->GLK1(2)          --------->ANAC46 <---------AHL20(2)      --------->ARR14(2)      -------->P --------->TOE2(3)      <---------ARR14(2)     <-----------GT1--------->YAB1     <---------GLK1(2)  <-------TEIL    <---------ICU4       ---------->DOF2   <---------ARR11(3)  --------->YAB1<---------ARR11(3) <---------MYB52(1) --------->MYB52(1)       --------->ARR11(3)   tccatcagaatctgttgatatctaaattcatttacccgttaaacattaataaataataactgataaagaattcgaaaacaatatctatatagctcaaaaa  18375800       ------>ZmHOX2a(1)     ------>ZmHOX2a(2)    <------ZmHOX2a(2)   --------->ARR11(3)                ---------->DOF2                      <------ZmHOX2a(1)   <---------ARR14(2)             --------->TOE2(3)                      ----------->GT1     --------   --------->ARR14(2)           <---------YAB1                     --------->DAG2          --------->ARR11(3)   <---------ARR11(3)        <---------YAB1                       ---------->DOF2 <----------ID1----- ----------->ARR10          --------->TOE2(3)           ---------->DOF2 <---------TOE2(3)  <---------ARR11(3)   ccctagatcctaacatttcaaaaacaaaaacattattcttaaagcttcgaaactaaaacaaagacttaaaaagtaaggaaaaaaacaacaaattatcttg  18375900                                                                                       <------ZmHOX2a(2)                                                                                       --------->CCA1(2)                                                                                       ==============                                                                                      --------->ARR11(3)                                                                                      <---------AGP1                                                                                      --------->AGP1<                                                                           --------->ATHB51        --                                                                           --------->YAB1    <-------                                                                           <---------ICU4<---------YAB1                                                                           <--------ATHB1----------->HVH21                                                                  ------->GAMYB  <-----------HVH21 <-                                                                 --------->MYB46(3)   <---------ARR14(2)                          --------->YAB1                         <---------MYB52(2)   <---------ARR11(3)                         <---------ATHB12         --------->AHL20(2)      --------->ICU4------>ZmHOX2a(2)                       --------->WOX13(1)         --------->AHL20(1)      <---------YAB1============= ->YAB1              <---------ATHB12             <---------AHL20(2) --------->YAB1   --------->ARR14(2) ---->ATHB12     <---------MYB59                 --------->AHL20(2)--------->MYB52(1)<---------CCA1(2)   atttagataaaacccaataccgaatcaatcaaatcacacagttttcaacaaaaaaattagacgaacaacaaacagaataattgtgtcagatctgatagtt  18376000                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    <                                                                                   <-----------HVH21<                                                                                <---------DEAR3(2)  <                                                                               <---------At1g77200  <                                                                               <---------DREB2C(2)  <                                                                               --------->ETT(1)    <x                                                                               <---------DEAR3(1)  <x                                                             --------->MYB46(3)<---------DEAR4(1)  <x                                                             <---------ATHB12<-----------HVH21     <x                                                            -------->P     -------->ABF1           <x                                                            ------>MYB46(1)<-------MYC2            <x                                                            ------>MYB83   <-------MYC3            <x                                                            ========================MYC_MYB        <x                                                          --------->AtMYB61------->MYC4            <x                                                         --------->MYB46(3)------->MYC3            <x                                                --------->At4g35610        ------->MYC2            <x                               <---------At4g35610--------->ZAT18          <-------MYC4            <x                               <-------GAMYB    --------->ZAT2<---------ICU4----------->HVH21      <x          <-----------GT1     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <--------ABF1            <-        <---------AHL20(2)    <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <---------ANAC55(2)      --   ------>ZmHOX2a(1)          <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          --------->O2            <xx  --------->TOE2(3)           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <---------O2            <xx ------>ZmHOX2a(2)            <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)           --------->TGA1a         <xx =========HOX2a_HOX2a         <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          <---------TGA1a         <xx ------ZmHOX2a(2)             <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)           --------->ANAC55(2)  ------ ------->ARR14(2)--------->TOE2(1)              <---------At4g35610  --------->ANAC46        <------- --MYB46(3) <-----------GT1   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    --------->ANAC58     --------->WOX13(1) --------ARR14(2)--------->TOE1(1)              <---------ZAT2--------->YAB1--------->ALFIN1<-------- =========HOX2a_HOX2a         <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     --------->ANAC58  <---------At4g35610   ggatccttattttttcacctcggactccgattcagttgatacaagacgggagctcacaaaccaaccatgacaagacacgtgtcggtgtcagccaatcagt  18376100            ------>MYB46(1)            ------>MYB83    <xxxxxxxxxxxxxxxxsmallRNA(i)    <xxxxxxxxxxxxxxxxsmallRNA(s)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxsmallRNA(i)   xxxxxxxxxxxxxxxx>smallRNA(i)   ----------->RAV1(2)   <xxxxxxxxxxxxxxxxxsmallRNA(le3)   <xxxxxxxxxxxxxxxxsmallRNA(s)--------->At5g28300  <xxxxxxxxxxxxxxxxsmallRNA(s) --------->DOF5.7(2)  --------->ARR14(2)      --------->DEAR3(1) <xxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxsmallRNA(i)--------->ATERF1(2) ------>NtERF2   --------->GLK1(2) <---------ALFIN1--------->ARR14(2) <xxxxxxxxxxxxxxxxsmallRNA(s)<---------ATERF1(2) <xxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxsmallRNA(se3)<---------DEAR3(2) xxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxsmallRNA(le3)<---------MYB52(1) xxxxxxxxxxxxxxxxsmallRNA(le3)----------->GT1 xxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxsmallRNA(l2) -------->LBD16  <---------ARR14(2) xxxxxxxxxxxxxxxxxxxxsmallRNA(s2) XXXXXXXXXXXXXXXXXXXXMIR168A/B--------->LBD16 xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxxxxxxxxxxsmallRNA(s2) xxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------HSFB2a(2)   --------->LBD16 ------->HSFB2a(2)  *TSS --------->DEAR3(2)  --------->YAB1 xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <---------ICU4 xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        --------->WOX13(1)            ----------->GT1 xxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->TOE2(3)                  --------->DAG2 xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <----------DOF2 <---------CCA1(2) --------->DAG2            ----- --->At4g35610  <---------ARR14(1)  --------->TOE1(3)                ---------->DOF2      ----------- --ICU4     <xxxxxxxxxxxxxxxxsmallRNA(s)------------>CBF       --------->At4g35610      <------ZmHOX2a(1) -ATHB12  --------->MYB46(3)<---------LBD16 <---------ATHB12 --------->YAB1 ---------->DOF2<------ZmHOX2a(1)   tcccgacctgcaccaagcgaatccgagaccgccggtaactttaacaatcatcgcatctctctctcatcagaaaaaggtgaaagagaataaggaggagaaa  18376200                   --------->ARR11(3)                   --------->AHL20(1)            --------->LBD16            ----------->GT1          <---------LBD16        --------->ARR14(2)        <---------ARR14(2)       ------>MYB83<---------ARR11(3)       ------>MYB46(1)     --------------->AGL15                                                   <---------MYB52(1)     <---------------AGL15                                                  <----------DOF2    ----------------->AGL1                                             --------->ATERF1(1)    ----------------->AGL2                        --------->MYB46(3)  --------->At4g35610    <-----------------AGL1             <---------ARR11(3)          <---------At4g35610      ---------    <-----------------AGL2             --------->ARR11(3)          --------->At4g35610  <---------AHL20(2)    ----------------->AG        --------->ICU4    <---------MYB52(2)  <---------ATERF1(1) <---------TOE2(3)    =======================================================================================MADS_MADS ------->MYB.PH3(1)<---------AHL20(1)--------->MYB59           <----------DOF2   <---------ZAT6   --- >GT1<---------MYB59  <---------AHL20(2)  <----------DOF2 --------->YAB1   --------------->AGL15 <---   acagttaccaaatccggcaaatattttttctgtgatttttaggtctttctcaactatcgataatactttagcagcctcctttagtggtatttaatgaaaa  18376300                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                   --                                                                      --------->O2                ---                                                                    ------>MYB83                  ---                                                                    ------>MYB46(1)               <--                                                                   ----------->HVH21              <--                                                                   --------->MYB55(1)             ---                                                                  <---------MYB59    <---------TGA1a                                                                  <---------MYB46(2) <---------At4g35610                     <---------ANAC58                          <---------WRKY18(1)   ================         <---------AHL20(2)                                   --------->WRKY12       --------->At4g35610         --------->ATHB12                                     --------->WRKY45       --------->TGA1a         <---------ICU4                                       --------->WRKY38(1)<-----------TGA1 <--         <--------HAHB4                                     <-------MYC3         <-----------HVH21<--         --------->AHL20(2)                                 ------->MYC2        --------->bZIP60(2)<-         -------->ATHB1                                     ------->MYC3        --------->ANAC46  <--         --------->ATHB51         ---------->DOF2           <-------MYC2     --------->GLK1(1)    <--        <---------ATHB51          ==============================================bZIP_DOF      <------        <---------ATHB12     <----------DOF2              ------->TEIL<---------O2   --------->O2 <--        --------->ICU4 <---------CCA1(2)            <---------ARR14(2)--------->TGA1a<---------O2---- >YAB1--------->WOX13(1) <---------CCA1(2)          <---------ARR11(3)<---------TGA1a----------->RAV1(2) ------>YAB1         <---------ANAC58               --------->ARR14(2)=========================bZIP_bZIP ------YAB1       <---------REM1(2)                <---------CCA1(2)--------->MYB52(1)   ----------->HVH21   tgataaaccaattatttgtctacgcgtgtctctttgaaaagtcttctgtttctatatctgcacgttgacctaacgtcggaactcgtcacctgtgactgtc  18376400      <---------ANAC58      <---------ANAC46      <---------ANAC58  <---------ANAC58  <---------ANAC58 <-------TEIL ----->PIF4 ------MYC2 ----->MYC3 ------MYC3 ----->MYC2 ------PIF5 ----->MYC4 ------MYC4 ----->PIF5 ------>TGA1a ------>O2 -------ANAC58 -------O2 ------>ANAC55(2) =======bZIP_bZIP -------ANAC58                                                                                   ---- -------TGA1a                                                                                 ------- ------PIF4                             <---------YAB1                                        <------ -------ANAC46                     <---------ICU4                                      --------->ANAC58 -------ANAC55(2)         <---------ARR11(3)                <---------AHL20(2)         --------->ANAC46 -----HVH21               --------->ARR11(3)                --------->AHL20(2)         --------->ANAC58 -------bZIP60(2)         <---------GLK1(2)             --------->AHL20(2) <----------ID1  --------->ANAC58 -------->OsbHLH66      <---------TOE2(3)              <---------YAB1      ----------->GT1 --------->ANAC58   acgtgcatgcgtctaaatcaactatttagatttttgagcattactagtgactatgtgattatataaatattgacatagggaaaaaaatcacacaaggatt  18376500                                                                             --------->TOE2(3)                                                                    -------->HAHB4                                                                    <--------HAHB4                                                                    <--------ATHB1                         ------>MYB83                               <---------ICU4                         ------>MYB46(1)             --------->ARR14(2)<-----------GT1                       <---------MYB59      --------->ZAT14         --------->ATHB51                    <-----------GT1         <-------TEIL            --------->YAB1                 <---------ICU4          --------->LBD16           --------->AHL20(2)           <----------DOF2  <-------TEIL--------->LBD16            <---------YAB1 ------->GT1     <---------AHL20(2)    <---------LBD16             --------->ICU4                   - -->ARR14(2)    <---------AHL20(2)  <---------ARR14(2)             <---------ATHB51            <----- ---ARR14(2)    --------->AHL20(2)  --------->ARR14(2)           --------->YAB1                <-----   tgtataaacaaaactttatttattaccaaatacatacaaatcccggttcagtccggtttggctagattaataattacattcttagagacgattttttgct  18376600  Previous    Next  AGI:  At5g45307.1    Description:  MIR168/MIR168B; miRNA Range:  from: 18376032    to: 18376120    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g45310.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO63757.1) Range:  from: 18376502    to: 18378341    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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