Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        --------->TGA2(2)                                                     <-----------TGA1                                                     <-----------HVH21                                                    <<<<<<<<<<AtbZIP1                                                    --------->ANAC46                                                    --------->ANAC58                                                    --------->bZIP60(1)                                                    --------->bZIP60(2)      --------->At1g77200                                                    <---------bZIP60(1)      --------->DEAR3(1)                                                    --------->ANAC58         ----------->HVH21                      <---------ALFIN1              <---------O2          --------->DEAR3(1)                      --------->AtMYB61             <---------TGA1a     <---------ATERF1(1)                      --------->ZAT6                --------->O2    --------->ANAC46                     --------->MYB46(3)           <---------ALFIN1  --------->ANAC58                   <---------ALFIN1         --------->ALFIN1<---------HSFB2a(1)                  --------->MYB46(3)       ===================MYC_MYB  --------->DEAR3(1)   ------>ZmHOX2a(2)----------->RAV1(1)    <-------GAMYB    --------->HSFC1(2)     ------->TEIL   =================HOX2a_HOX2a           <---------MYB46(3)--------->HSFB2a(1)<------NtERF2 -------- --------->ARR11(3)--------->AtMYB61     <---------AtMYB61  <---------HSFC1(2)------>NtERF2 <-------- <---------ARR11(3)--------->DEAR3(1)   <------ZmHOX2a(1)<---------At4g35610--------->RAP2.3(1) -------DOF2 ------>ZmHOX2a(1)   --------->MYB52(1) --------->TGA1a --------->ANAC58        ---------   tttgatcttcttctccttccaccaccactagaagacgacggaggaggttgagccacgtcagaagcttctctcgccatcgccgacgagcctagacatgatt  18369300           ------>ZmHOX2a(2)          <------ZmHOX2a(2)         <---------ARR14(2)         <---------ARR11(3)    ------>NtERF2   ------>NtERF2                           <---------At4g35610   --------->LBD16                    <----------DOF2  --------->DEAR3(1)            --------->ANAC58 <---------LBD16          ---------->DOF2  --------->At4g35610    --------->ANAC58 ->ATHB12--------->ARR14(2)     --------->ANAC58        --------->ATHB12              <---------ALFIN1 -YAB1  --------->At4g35610 --------->ANAC58           <---------YAB1          <----------DOF2    --- >ICU4  <---------At4g35610 --------->ANAC58       <-----------GT1--------->ANAC58 <-----------GT1<--   tgctccggccagatcccatcttcttctcaaaagcaaacaactttctgctaaaattacatcattgacacaagacccacaagtcttttccccatcttcttca  18369400                                                          ------>ZmHOX2a(2)                                                         <------ZmHOX2a(2)                                                         <---------RVE1(1)                                                        --------->ARR14(2)                                                        --------->ARR11(3)                                                        --------->AGP1                                                        <---------ARR11(3)                                                        <-----------ARR10                                             <---------DAG2<----------DOF2       <---------ATHB12                      <----------DOF2      ------>MYB46(1)                 =====================HOX2a_HOX2a      ------>MYB83                   --------->ARR11(3) <---------AGP1                --------->YAB1    --------->AtMYB61                <---------ARR11(3) <---------ARR14(2)          <---------WOX13(1)    <---------MYB55(2)           ---------->DOF2    ------>ZmHOX2a(1)             --------->ATHB12    --------->MYB46(3)       <---------ARR11(3)     =============HOX2a_HOX2a    <-----------TGA1 ------>ARR14(2)             --------->GLK1(2)     --------->TOE2(3)        <---------ARR14(2) -------ARR14(2)      --------->ANAC46<------ZmHOX2a(2)<---------CCA1(2)    --------->ARR14(2)     --   aatccaccaatcgaagaaacctccaagtcaaaatctaaagatcgaaactttttcctcagatctttacattgaaacccgaattcgtcattgacaatgcaga  18369500                          <---------AGP1            -------->ATHB1--------->AGP1            <---------ICU4--------->ARR11(3)            -------->HAHB4<---------ARR11(3)            <---------AHL20(2)            --------->ATHB12            --------->ATHB51------>ZmHOX2a(2)           <---------YAB1 --------->ARR14(2)           --------->ICU4<---------CCA1(2)                                        <---------ANAC46           <---------ATHB12--------->CCA1(2)                                      <---------ANAC58           <---------ATHB51<------ZmHOX2a(2)                                <---------AHL20(2)        ------------>ATHB5<---------ARR14(2)                                <---------YAB1   <-------        --------->ICU4--------->LBD16                                  <----------DOF2      <-------- ---------->DOF2      <---------LBD16                         <---------GLK1(1)   <---------ANAC58<-- ------->YAB1     --------->ARR14(2)                --------->YAB1     <---------DAG2     <---------AHL20(2)   atcaaaagccctaattattgaatccccagatctgaaactcgatcgagattgcaagaatacctcgaaatctgaactttttttattgcgagaaattaatgta  18369600                                                                      ------>ZmHOX2a(2)                                                                      ========================HOX2a_HOX2a                                                                     <---------------------WRI1                                                                  ----------->HVH21                                                                --------->ANAC55(2)                                                          <---------RVE1(1)                                                         <---------ARR11(3)                                                         <---------GLK1(2)                       ---- --REM1(1)    <-------GAMYB                              --------->ARR11(3)                 --------- -TOE2(3)<---------ANAC46   ---------->DOF2     ---------->DOF2<---------TOE2(3)        <----------ID1 ----ZmHOX2a(1)     <----------DOF2     <----------DOF2----------->ARR10               <------ZmHOX2a(1)   ggaactaagctatgtgtgttgtctttgaatcaaagagaaatgctttgaagaaaaggaaagatttttaggtgatcggagtaatcgaagaaggagacaaagc  18369700                                         <---------ANAC58                            --------->HSFB2a(2) <---------ARR14(2)         <---------HSFB2a(2) ------>MYB46(1)           <---------ANAC46                                                      <--- --------->ARR14(2)        <---------LBD16                                ------>MYB46(1)     <------ ------>MYB83             <---------LBD16<---------ANAC46                 ------>MYB83       <<<<<<<< --->TEIL                *TSS       --------->ALFIN1                    <---------MYB59   <---------- ->DOF2               <----------DOF2    <---------ANAC58  <---------------AtSPL8      <----------DOF2   acctatctgcgatagagagagagacttttacgggaagagtgtgtcttgatgttcgaacgagagggaacaaaaaaccaaactcaccatttctttatttttc  18369800                                                                     --------->ATHB51                                                                     <---------ICU4                                                                     --------->ATHB12                                                                    <---------YAB1                                                                  <---------ICU4      <----------DOF2                                            <---------ATHB12 <----------DOF2                                   <-----------GT1--------->YAB1 -------DOF2                 <----------DOF2      <---------AHL20(2)--------->ICU4          --------- -----GT1          --------->YAB1        <---------TOE1(2)       --------->ICU4            <---------YAB1 <<GT-3b          <---------YAB1      <---------ANAC58         --------->WOX13(1)     <------ZmHOX2a(1) --------------ANAC81 <-----------GT1 <---------ANAC58 <----------DOF2         --------->ATHB12  ----   tttcttttctttttcaaactattataacattcttttgttttcgttcgattttttaatcttttttgcaatcataattggacttcattgaggactataattg  18369900                                                                ------>MYB46(1)                                                                ------>MYB83                                                              <---------MYB59                                                           ------>MYB46(1)                                                           ------>MYB83                                                         --------->AtMYB61           --------->ANAC46       <----------DOF2                                  --------->MYB46(3)        --------->ZAT14  ---------->DOF2            --------->YAB1           <-----------GT1   --------->KAN4(1) >ATHB51          --------->ATHB12                 <---------REM1(1)   <---------KAN4(2) ------->GT1     <---------YAB1       --------->At4g35610<---------MYB59<---------KAN4(1)   agaaaaaagctttgaaatggtcattgaacagtgatcacttagatgaaaaatagttgtaaccaaaccaaactagaatattcaaactatactcaaaactgaa  18370000                                    --------->At4g35610                                             <                          <---------AHL20(2)                                      <---------GLK1(2) -              <----------DOF2   <---------ANAC58                            --------->GLK1(2)       -             <---------DAG2     <---------ANAC58                            <---------ARR11(1) ------        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                ------->TEIL       <-----        ---------->DOF2   --------->AHL20(2)                               <---------ARR14(1) -------   attttgttgacaaagccttttggttttataaattgcgaagcagaaatacaaaatcgaaccaaaatcgaaccaaaatcgaatctatattctcaaaaattaa  18370100           <---------ZAT14                 <---------ARR11(3)           --------->ZAT18                 --------->AHL20(1)           --------->ZAT14                 --------->AHL20(2) <---------AHL20(2)                        <---------AHL20(1) <---------YAB1                            --------->ARR11(3) ---------AHL20(1)                        --------->CCA1(2)                   ----------->GT1 -------->AHL20(1)                       <---------ARR11(3)                  --------->DAG2 -------->AHL20(2)              ----------->GT1                             ---------->DOF2 --->AHL20(2)                 ---------->DOF2   <---------AHL20(2)     ----------->GT1 ----AHL20(2)             ---------->DOF2--------->ARR11(3)   --------->AHL20(2)     --------->YAB1 -->AHL20(2)          ---------->DOF2---------->DOF2  ----------->GT1--------->At4g35610   --------->AHL20(2)   aatataattgaactacactaacttcaaagaaagaaagaaaaaagatatattaaaaatagaaaaaaaaaatgagttgaaaaaagtaaatcacaataaacta  18370200  Previous    Next  AGI:  At5g45290.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G19950.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63769.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 18367009    to: 18369725    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version