Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          ------->PIF5                        <-------PIF5                 <---------ZAT2                 --------->At4g35610                 <---------At4g35610                 --------->ZAT2                                                                ------         ----------->RAV1(1)                                                                   <-----    <---------ZAT2      <-------MYC2                                                           ------    --------->At4g35610 ------->MYC3                                                      <---------ZAT14    --------->ZAT2  <---------At4g35610                                --------->At4g35610<---------ARR14(2)    <---------At4g35610 <-------MYC3                                   <---------At4g35610--------->ARR14(2)   <-----------RAV1(1)  ------->MYC2                        <----------DOF2        <----------DOF2 ->At4g35610------->GAMYB                      ---------->ID1    <<<<<<<<<TBF1<---------ARR11(3)   --   agcctctgctgcaacaggctgctgctcgtgcttaacaaatacactactcgtcgttctcaactctttcttcttcagctcaagttctctttgagtattctgc  18357300                                                --------->TOE2(3)                                         ------>ZmHOX2a(2)                                         ===============HOX2a_HOX2a                                        <---------At4g35610                                       <---------AGP1                         ----------->RAV1(2)                                       <---------ARR11(3)                     =======================                                   <---------ANAC58                           --------->At4g35610                                   <---------ANAC58                           <---------At4g35610 <--  --------->GLK1(1)           <---------At4g35610                           <-----------GT1  <------- --->ZAT14                    ------>ZmHOX2a(1) --------->TOE1(3)     <----------DOF2        -------- ----ZAT14<---------At4g35610 --------->At4g35610        <---------ATHB12 <-----------HVH21  -------- --->ZAT18--------->At4g35610 ==================HOX2a_HOX2a    <-----------GT1<---------ZAT2 <------- ------->ICU4   <---------ATHB12----------->HVH21------>ZmHOX2a(1)<----------DOF2           <--------   actgatttcttcagctcaatgagtgttgtttcctctgacttgatctgattccttagcaaatcaagttactttcttttgtcacctgcttcaatctctgctg  18357400                                                                          --------->TOE2(3)                                                             <---------ANAC58                                                             <---------ANAC58                                                          ----------->HVH21                                                        --------->At4g35610                                         <---------------AGL15     ------>ZmHOX2a(2) ===RAV                                  --------------->AGL15     ===============HOX2a_HOX2a --------DOF2                           <-----------------AGL2    <---------At4g35610 --ZAT2                            --------->MYB52(2)   ------>ZmHOX2a(1) --------->TOE1(3)         < ->At4g35610                     <---------MYB52(1)     <---------At4g35610------>ZmHOX2a(1)     <--- ->ZAT2    <----------DOF2   <---------At4g35610        ==================HOX2a_HOX2a            ==== --At4g35610                ------->TEIL<-----------------AGL1   <---------AGP1             <-------- ---RAV1(1)<---------DAG2 <-------TEIL  <-----------------AGL3   <---------ARR11(3)         =========   ctttaatctctcgctttttagcttcaagtgcatctgtttgtttctcaatatggttttcctctgacttgatctgattccttagcaaatttagttccttttc  18357500      ----------->HVH21    ===============================bZIP_DOF    ===============================bZIP_DOF    --------->O2    <---------ANAC55(2)    --------->TGA1a    <---------O2    <---------At4g35610    --------->ANAC55(2)    ----------->RAV1(2)    ==========================RAV    <---------TGA1a--------->ZAT2    --------->At4g35610                                                                           ---  <-----------GT1  <---------At4g35610                                                           ---- -----------HVH21  --------->At4g35610                                                           ---- -------DOF2       <---------ZAT2              --------->LBD16                     <---------TOE2(2) =============bZIP_DOF               <---------HSFB2a(2)                <---------ANAC58        ----- --DOF2           <-----------RAV1(1)--------->HSFB2a(2)                <---------ANAC58        <---- =============bZIP_DOF  <----------DOF2   <----------DOF2      --------->ARR11(3)  <---------TOE1(2)   tttgtcacctgactcaatctctgctgctttaatctgcttctggactttccccaatttcaagctcagaacttgaagcttgttctccttggtttcaacttcc  18357600                                                               <---------At4g35610                                                               ----------->RAV1(2)                                                         <---------ARR11(3)                                                    ------>ZmHOX2a(1)                                                   --------->TOE2(3)      <----------DOF2                           --------->ANAC46          <----------DOF2          <- ------>LBD16                                <---------ZAT18   *TSS     --------->At4g35610        <- ----->ANAC46             --------->YAB1     --------->ZAT14   --------->ZAT2                      <- ----->LBD16 <---------GLK1(1)               <---------ZAT14   <---------ZAT2                      -- ---->HSFB2a(2)         --------->ANAC58  ------>ZmHOX2a(1)  <-----------RAV1(2)                   -- -----HSFB2a(2)         --------->ANAC58 --------------->AtSPL8--------->At4g35610     ---------->DOF2   cgagacttcttttcgatatcggtttcaagcatatcaagatggtcctgtacactcctcaatatcccagctgaatcagctttgtatttctccaaagacttac  18357700                                                                                                  ---                                                                                                 ----       <---------CCA1(2)                                                                       ------     <---------ANAC58                                                                         -------     <---------ANAC58                                                                 --------->MYB52(1)  <-----------GT1                                                                  --------->ANAC46 --------GLK1(2)                                                                   --------->ANAC58 --------ARR14(2)                <---------ZAT6                                    --------->ANAC55(2) --------ARR11(3)                ----------->HVH21      ------>ZmHOX2a(1)          <---------ANAC55(2) ------->ARR11(3)            <---------ZAT14           --------->TOE2(3)           --------->ANAC55(1) ------->ARR14(2)         <---------ANAC46 <---------ZAT6 ----------->RAV1(1)      --------->ANAC58--   agattttccgtctcttagactcactgttgagtctagtgacagtgagtgttaactcatcctcaacacaagtcttctccatcgcaacaagtaatggcttcaa  18357800                                                                                                <----                                                                                               <-----                                                                                              <------                                                                                        <---------ARR11(3)                                          <---------ARR14(2)                            --------->ARR11(3)                                          --------->ARR14(2)                    =====================                                    --------->TOE1(2)                           <------ZmHOX2a(1)----                                  ------->TEIL                                  ===================== -------->GT1                   <---------ZAT18                                --------->ANAC58<----- ----->ZAT6                     --------->ZAT14                                --------->ANAC46------ ----->RAV1(1)       --------->TOE1(3)    --------->GLK1(2)                    --------->ANAC58------ -->REM1(1)  ----------->RAV1(1)<---------ZAT14                      ----------->GT1  --------->ANAC58 ------->At5g28300   --------->TOE2(3)   <---------GLK1(1)          ----------->GT1   --------->ANAC58   cagtaacaacaacaacaacaaaaccttaacacagtgaacctgcaaatccgattacaagagaaaaacaaaatgggtaaatgcaggaaacaagctcttagat  18357900                                                     ------>MYB46(1)                                                     ------>MYB83      --------->MYB52(1)                             --------->MYB52(1)   --------->ANAC46                                <---------------AGL15 --ZmHOX2a(2)                                      <---------MYB59 ----AGP1                                          --------->AtMYB61 ---CCA1(2)                                        --------->MYB46(3) ===HOX2a_HOX2a                                   ----------------->AGL1 -->ZmHOX2a(2)                                   ------>MYB83 ----------->ARR10 ==HOX2a_HOX2a                                   ------>MYB46(1)<---------ARR11(3) ----ARR11(3)                                   --------->ORA47(1)              --------->ANAC58 --->AGP1                                      --------->DEAR3(1)               --------->ANAC58 --->ARR11(3)                <---------GLK1(2)--------->DEAR3(2)--------->ARR11(3)   ctaaaacacaacgttcttcagaaacaaaacacattctccatagccaaaaccgaccaaacagagtaagattttaggcaaatgtaagaaactaagccctaaa  18358000                                                                                              <------ZmHOX2a(2)                                                                                             --------                                                  --------->ZAT6                             <-------                                              --------->At5g28300                  --------->DEAR3(1)                                           <---------At4g35610        --------->YAB1       ----------         ---------->DOF2        --------->At4g35610        <---------LBD16    <-----------HVH21  ---- --------->AHL20(2) --------->YAB1         --------->At4g35610<------ZmHOX2a(1) <---------WRKY38(1)   cgaataaataacaaagaatcaaacataccctagaagctaaacatcagcagtaacacaaaattcaggaagaaatcaaaataggtcaccgaagagaagatca  18358100                                                                                                    <                                                                                                  ---                                                                                           <---------                                                                                           <---------TOE2(3)                                                ---------->DOF2                          ---------->DOF2 ->ARR11(3)                               <------ZmHOX2a(1)                              ============ --ARR11(3)                             --------->ANAC58                          ---------->DOF2---- ->ARR10    ---------->DOF2        <---------TOE2(3)---------->DOF2               =================== ----->At4g35610      <----------DOF2   --------->ANAC58----------->GT1       ---------->DOF2   -----   gaagaacatctaaaaaaagactaactttgaaattacgaaggtaaggaagaaaaagaaagagcaaaaacaaattagagagagaaagaaagagtaaaggaaa  18358200  Previous    Next  AGI:  At5g45276.1    Description:  unknown pseudogene Range:  from: 18355981    to: 18357663    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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