Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                <------                                                                         ------>ZmHOX2a(2)    -------                                                             >>>>>>>>>SPL4                   --------                                                             --------->SPL7                  ------->TEIL                                                             >>>>>>>>>SPL1                  ---------                  <---------ZAT2                           --------->LBD16                --------->ANAC58       <---------MYB46(3)                                --------------->AtSPL8  --------->ZAT2       --------->MYB55(2)   --------->ATHB12  --------->HSFB2a(1)      --------->ARR11(3) --------->ANAC58      --------->ALFIN1 --------->HSFB2a(2)    --------->ALFIN1         <---------ARR11(3) --------->ANAC46 --------->MYB52(1)    <---------HSFB2a(2)    <---------ZAT6 >>>>>>>>>SPL5       <---------ZAT2 ---------->HVH21 --------->ZAT2     --------->ANAC58    --------------->AtSPL3  <---------At4g35610 ---CCA1(2)<---------ATERF1(1)       --------->ANAC58  ------------------>SPL14  --------->At4g35610   ctctaacggtggatggctccagcttgtagaagattggaatcgcaacgagtgttccttcatccgtacaatctttgatcttctccagctctctcacgcacca  18343000                   <------NtERF2                                                <---------WRKY18(1)                  --------->LBD16                                              --------->WRKY12         --------->ZAT14                                      <---------At4g35610 ---At4g35610    --------->ETT(1)                             --------->At4g35610 -->At4g35610    <---------ANAC46                       ------>ZmHOX2a(1)      --------->WRKY38(1) --->RAV1(1)    <---------LBD16                     --------->ARR14(2)  --------->HSFB2a(2) >ANAC46 <---------ZAT14                         ------>ZmHOX2a(1)      <---------HSFB2a(2)         <   gactgactcggtgtagttgccggagaagatagccaaaacgattttggactcctctatcctcttcagcagtacatctagaggttgacctctgtcttcatag  18343100                                                                    --------->GLK1(2)                                                                    <-----------ARR10                                                                    <---------ARR14(2)                                                                    --------->ARR14(2)                                                                ------>NtERF2                                                              --------->RAP2.3(1)                                                             <---------ATERF1(1)                                                             --------->LBD16                                                             ------>NtERF2                                                            <---------DEAR3(1)                                                        --------->GLK1(1)                                                        --------->HSFB2a(1)                                                        <---------HSFB2a(1)   --------->ANAC46                                                        <---------GLK1(1)     --------->ANAC58                                                       --------->ARR14(2)    <---------LBD16                                                 ----------->HVH21 <---------CCA1(2)                                               --------->At4g35610 <---------GLK1(1)                                               <---------At4g35610----------->ARR10                                        <---------ANAC55(2) --------->ANAC46 --------->LBD16                                        --------->ANAC55(2)<---------LBD16  --------->MYB52(1)                                     <---------MYB52(1)------->TEIL--------->GLK1(1)                <                                    <-------GAMYB----------->TGA1<------NtERF2--------->ANAC58     <-                <-----------RAV1(1) <---------RAP2.6(3)<-----------ARR10    <---------ALFIN1    -----     ---------->DOF2               <---------MYB46(3)  <---------ARR14(2)--------->PCF2       ======= ------NtERF2  <---------TOE2(3)------------>MYB.PH3(1)--------->GLK1(2) --------->ANAC46     -------   tcgtcgataaagacgttgatgttgttcaatttcaaggccgttacgagatggctgacgaatctccggcgcaaatctgccccacggaaattgatgaacacct  18343200          <---------ANAC58          <---------ANAC58          <---------ANAC46         <------NtERF2        <---------MYB46(3)                                            ------->TEIL        ------>NtERF2                                               <---------ZAT18       <---------DEAR3(1)                                           <---------ZAT14             <----    <---------DEAR3(1)                                           --------->LBD16               <-----   <---------LBD16                                              --------->LBD16            <---------ANAC58 ---------At4g35610                                            <---------LBD16             <---------ANAC46 ----------RAV1(1)                                       <---------DAG2                    <---------ANAC58 ------>HVH21                                            <----------DOF2      <----------DOF2  <----- ==========RAV                                      ---------->DOF2 --------->ZAT14 ------>ZmHOX2a(1) ---->RAV1(2) ---------->ARF1              <---------AtLEC2   <---------LBD16 <---------DAG2  -------   gatgctgcggtggcttgtcttccacagtggaaatagatgatgtctccatggcccaaaagctttttcccggtgtacttggacttttcctcactggtgtgcg  18343300                                                  <----------DOF2                                                  <---------DAG2                                                 <---------DAG2                                               <---------ARR11(3)                                               --------->ARR11(3)                                          <---------AHL20(2) ---GAMYB                    <----------DOF2  <-----------GT1 ----ANAC58           >>>>>>>>>WRKY6      ----------->TBP           <-------GAMYB ----ANAC58         --------->WRKY38(1)   --------->AHL20(2)       <-----------RAV1(1)          ----- -->ZAT18      <------------CBF     <----------DOF2                <---------MYB46(3)----------->GT1   ttagagtagcaagaatgtattgttgactattcttttctctttttttaaatacctttttgttattttttgctgttggaaaaatatcaaatgtaaaaaaaca  18343400           <---------MYB46(3)           ----------->GT1                                                                         --          <---------AtMYB61   *TSS      ------>NtERF2                <---------TOE2(3)             <-        <---------ANAC58      --------->DAG2              ------>NtERF2                           ---        <---------ANAC58     ---------->DOF2            <---------LBD16                           <--    --------->CCA1(2)     --------->YAB1<---------DEAR3(2)--------->LBD16                    -------- ----------->ARR10       <---------ATHB12<------NtERF2--------->GLK1(2)   --------->MYB52(2) -------- ---->MYB52(1)       ------------>CBF  <---------DEAR3(1)<---------LBD16<--------P     ---------->DOF2   actgagatttgagtggttgaatgtccaatgaaaaagcatcgtcggcataaacaaaaattccggcgaaatcaaaggttagttcaaagtatcaaagcgcgaa  18343500                                                         --------------->AtSPL8                                            <---------ANAC58                                        <---------At4g35610                                        <---------ZAT2   --------------->AtSPL3                                        --------->At4g35610                                        --------->ZAT2   --------->ANAC58                                      <-----------RAV1(2)--------->ANAC58    ----------------->AGL1   <---------ANAC58         <---------SPL7<---------ANAC58 ------->YAB1                <---------ANAC58       <---------------AtSPL3   --------->O2 --------ICU4                <---------ANAC46       <---------------AtSPL8  ------>NtERF2          -- ------>ICU4              <---------GLK1(1) <---------ANAC46        <---------ANAC58    <---------ARR11(3) -------ATHB12            --------->GLK1(1) <---------ANAC58     <----------DOF2        --------->ARR11(3) ->ANAC58         <------ZmHOX2a(1)  <---------At4g35610<-------TEIL<---------ANAC46   <---------At4g35610 ->ANAC58----------->GT1<------ZmHOX2a(1)  <-------TEIL --------->SPL7     <---------ALFIN1   -------   atcatgaccaattgtgaaaaggatgaggaattcgtgtgcatcagctgcgtagaagaggtacggtactctttcgtgagccacctctctgaagctctccgtc  18343600                                                                             <---------At4g35610                                                                             --------->ZAT2                                                                          ---------->DOF2                                             <----------DOF2           --------->HSFB2a(2)                                         ------>ZmHOX2a(2)             <---------HSFB2a(2)                                       <---------ARR11(3)            <------ZmHOX2a(2)                                       --------->ARR14(2)           --------->ARR11(3)             <-----------RAV1(1)       --------->ARR11(3)           <---------ARR11(3)    -----------        --------->YAB1        --------->ARR11(3)                ---------->DOF2     <---------GLK1(1) --------->DAG2          <---------REM1(1)   <---------DAG2  --------->ANAC58<---------ZAT2  <------- -------->DOF2 --------->ALFIN1        <---------ARR14(2)    --------->ANAC58--------->At4g35610   <- -->LBD16 <---------AHL20(2)  <---------ARR11(3)           <-----------RAV1(2)      --------->GLK1(1)   gaaaaggcataaataatgtggtcgtagatgtagatatcgatgatctgcttttcaaggagtctcaggcaaagatcgagaaagctggggtttctgtgatggt  18343700                                                                                                 <---                                                                                                 <---                                                                                       --------->MYB55(2)                                                                                       --------->ABI4(2)                                                                                       <---------MYB46(3)                                                                                      <---------AtMYB61                                                                                      --------->ALFIN1                                                                                     <-------GAMYB                                                                                     <------NtERF2      --------->ARR14(2)       <---------ANAC58                                     <---------DEAR4(2)      <---------ARR14(2)       <---------ANAC46                                    <---------DREB2C(2)    --------->LBD16            <---------ANAC58                                    <---------DEAR3(1)   --------->LBD16        --------->ALFIN1                                         --------->ALFIN1 <   --------->ANAC46    <---------TOE1(2)                      ---------->DOF2     <---------ABI4(1) <  <---------LBD16     --------->LBD16                <---------HSFB2a(2)       <-----------RAV1(2) <- >HVH21              <---------TOE1(1)           <---------GLK1(2)          <------ZmHOX2a(1)   <---- --AtMYB61        ------>ZmHOX2a(1)             --------->HSFB2a(1)       --------->ANAC58      <---- ----------GT1  ------>ZmHOX2a(2)----------->HVH21   --------->HSFB2a(2)  --------->ANAC58      -----   tttacccggaaactgtgatccttccgaggtatggcttgacaagttcgccaaggttctcgagtgccaaaggaacaacaaggaccaggcggtggtttcagtg  18343800     ----------->HVH21    xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------GLK1(1)              --------->LBD16    --------->At5g28300                     --------->GLK1(1)             <-----------RAV1(2) --------->SPL7                       <---------At4g35610              ------>MYB46(1) ------------AtSPL8           <---------ANAC58                         ------>MYB83 ------------AtSPL3           <---------ANAC58   <---------At4g35610  --------->WOX13(1) <<<<<<<<SPL4     <---------ANAC58    --------->At4g35610         <-----------GT1 <<<<<<<<SPL7     --------->ANAC55(2) <---------ZAT2           --------->ARR14(2)    <----------DOF2 --------SPL7     <---------ANAC58  --------->ZAT18         --------->ANAC58         <---------DAG2 -----ZAT14       <---------ANAC55(2) --------->ZAT2        --------->ANAC58 <---------GLK1(2) --------------SPL14 <---------PCF5<---------ANAC58  <---------ANAC58--------->AtMYB61 ---->ZAT14      <---------LBD16   <---------ANAC58  <---------ANAC58--------->MYB46(3)     <--------   ttgtacggtgacagtctattacgggaccaatggcttagcgagctggatttcagaggcttatcacgaattcaccaatccaggttttcgctttattctactc  18343900  Previous    Next  AGI:  At5g45250.1    Description:  RPS4 (RESISTANT TO P. SYRINGAE 4). similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT3G51570.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G36150.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G45060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64653.1); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains Range:  from: 18339141    to: 18343249    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g45260.1    Description:  RRS1 (RESISTANT TO RALSTONIA SOLANACEARUM 1); transcription factor. Identical to Probable WRKY transcription factor 52 (WRKY52) [Arabidopsis Thaliana] (GB:Q9FH83;GB:Q689Y9;GB:Q8GZ83;GB:Q9FH84); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G36140.1); similar to TTR1 (WRKY domain family protein 16), transcription factor [Arabidopsis thaliana] (TAIR:AT5G45050.2); similar to TTR1 (WRKY domain family protein 16), transcription factor [Arabidopsis thaliana] (TAIR:AT5G45050.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16318.1); contains InterPro domain Disease resistance prote Range:  from: 18343430    to: 18349836    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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