Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          --------->YAB1                                                                 <---------ICU4 --------->ETT(2)                                                                     <---------ATHB12 <---------ETT(2)                                                         <----------DOF2 -->ZmHOX2a(2)                                                     <---------------AtSPL3 --ZmHOX2a(2)                                                      --------------->AtSPL8 ----AGP1                                                          <---------------AtSPL8 --->ARR11(3)          <---------ZAT14                             --------------->AtSPL3<---------YAB1 ----ARR14(2)          --------->ZAT14                         --------->AHL20(2)     --------->ICU4 --->ARR14(2)      <---------ICU4                         --------->AHL20(2)  <---------ANAC58 --->AGP1          --------->ZAT6                        --------->AHL20(2)   <---------ANAC58 ----ARR11(3)     <---------ATHB12                   --------->AHL20(2)  <---------DAG2--------->YAB1   ctgtctacaattgtaatctaatcactactgtgtctaggtttgtaactgagtcaaaaaaaataaaaaaaaatggtaccttttcttgtcaatgatgatgccc  18342800                                                                                         <----------DOF2                                                                                   --------->HSFB2a(1)                                                                                   <---------HSFC1(2)                                                                                   --------->HSFC1(2)                                                                                   <---------HSFB2a(1)                                                                                 ------>MYB46(1)                                                                                 ------>MYB83                     <---------HSFC1(2)                                        <---------MYB46(2)             ----------->GT1                          <---------MYB52(1)  <-----------HVH21       <------ZmHOX2a(1)                      --------->YAB1       ------>ZmHOX2a(1)<----------DOF2     --------->MYB59 --------->HSFC1(2)    ------>ZmHOX2a(1) <---------ALFIN1  --------->DEAR3(1)   - <---------YAB1   ---------->DOF2   <----------DOF2  --------->TOE2(3)   --------->WOX13(1)   <------   ataatgttaggaatcaagttaaaagcttccttccatttctttttcctctcatcacccttagccatactcctaaatctatcaccgaactttcctttcaaat  18342900                                                                                              -------                                                                         ------>ZmHOX2a(2)    <------                                                             --------->SPL7                  ------->TEIL                                                             >>>>>>>>>SPL1                   --------                                                             >>>>>>>>>SPL4                  ---------                  <---------ZAT2                           --------->LBD16                --------->ANAC58       <---------MYB46(3)                                --------------->AtSPL8  <---------At4g35610       --------->MYB55(2)   --------->ATHB12  --------->HSFB2a(1)      <---------ARR11(3) --------->ANAC58      --------->ALFIN1 --------->HSFB2a(2)    --------->ALFIN1         --------->ARR11(3) --------->ANAC46 --------->MYB52(1)    <---------HSFB2a(2)    <---------ZAT6 >>>>>>>>>SPL5       --------->At4g35610 ---------->HVH21 --------->ZAT2     --------->ANAC58    --------------->AtSPL3  <---------ZAT2 ---CCA1(2)<---------ATERF1(1)       --------->ANAC58  ------------------>SPL14  --------->ZAT2   ctctaacggtggatggctccagcttgtagaagattggaatcgcaacgagtgttccttcatccgtacaatctttgatcttctccagctctctcacgcacca  18343000                   <------NtERF2                                                <---------WRKY18(1)                  --------->LBD16                                              --------->WRKY38(1)         <---------ZAT14                                      <---------At4g35610 -->At4g35610    --------->ETT(1)                             --------->At4g35610 ---At4g35610    <---------ANAC46                       ------>ZmHOX2a(1)      --------->WRKY12 --->RAV1(1)    <---------LBD16                     --------->ARR14(2)  --------->HSFB2a(2) >ANAC46 --------->ZAT14                         ------>ZmHOX2a(1)      <---------HSFB2a(2)         <   gactgactcggtgtagttgccggagaagatagccaaaacgattttggactcctctatcctcttcagcagtacatctagaggttgacctctgtcttcatag  18343100                                                                    <---------ARR14(2)                                                                    --------->ARR14(2)                                                                    <-----------ARR10                                                                    --------->GLK1(2)                                                                ------>NtERF2                                                              --------->RAP2.3(1)                                                             <---------ATERF1(1)                                                             --------->LBD16                                                             ------>NtERF2                                                            --------->ANAC46                                                        --------->HSFB2a(1)                                                        <---------HSFB2a(1)                                                        --------->GLK1(1)     --------->ANAC58                                                        <---------GLK1(1)    <---------LBD16                                                       <---------ARR14(2)    --------->LBD16                                                 ----------->TGA1<------NtERF2--------->ANAC58                                               <---------At4g35610 <---------CCA1(2)                                               --------->At4g35610 <---------GLK1(1)                                        <---------ANAC55(2) <---------DEAR3(1)--------->ANAC46                                        --------->ANAC55(2)<---------LBD16  <---------ALFIN1                                     <---------MYB52(1)<-----------ARR10    --------->MYB52(1)      <                                    <---------RAP2.6(3)------->TEIL--------->GLK1(1)               <-                <-----------RAV1(1) <-------GAMYB----------->HVH21----------->ARR10             -----     ---------->DOF2               <---------MYB46(3)  --------->ARR14(2)--------->PCF2       ------- ------NtERF2  <---------TOE2(3)------------>MYB.PH3(1)--------->GLK1(2) --------->ANAC46     =======   tcgtcgataaagacgttgatgttgttcaatttcaaggccgttacgagatggctgacgaatctccggcgcaaatctgccccacggaaattgatgaacacct  18343200          <---------ANAC58          <---------ANAC58          <---------ANAC46         <------NtERF2        <---------MYB46(3)                                            ------->TEIL        ------>NtERF2                                               <---------ZAT14       <---------DEAR3(1)                                           --------->ZAT14             <----    <---------DEAR3(1)                                           --------->LBD16               <-----   <---------LBD16                                              --------->LBD16            <---------ANAC46 ---------At4g35610                                            <---------LBD16             <---------ANAC58 ----------RAV1(1)                                       <----------DOF2                   <---------ANAC58 ------>HVH21                                            <---------DAG2       <---------DAG2   <----- ---->RAV1(2)                                       ---------->DOF2 <---------ZAT18 ------>ZmHOX2a(1) ==========RAV---------->ARF1              <---------AtLEC2   <---------LBD16 <----------DOF2 -------   gatgctgcggtggcttgtcttccacagtggaaatagatgatgtctccatggcccaaaagctttttcccggtgtacttggacttttcctcactggtgtgcg  18343300                                                  <----------DOF2                                                  <---------DAG2                                                 <---------DAG2                                               --------->ARR11(3)                                               <---------ARR11(3)                                          ----------->TBP ---GAMYB                    <----------DOF2  <-----------GT1 ----ANAC58           >>>>>>>>>WRKY6      --------->AHL20(2)        <-------GAMYB ----ANAC58         --------->WRKY38(1)   <---------AHL20(2)       <---------MYB46(3)----------->GT1 -->ZAT18      <------------CBF     <----------DOF2                <-----------RAV1(1)          -----   ttagagtagcaagaatgtattgttgactattcttttctctttttttaaatacctttttgttattttttgctgttggaaaaatatcaaatgtaaaaaaaca  18343400           <---------MYB46(3)           ----------->GT1                                                                         <-          <---------AtMYB61   *TSS      ------>NtERF2                <---------TOE2(3)             --        <---------ANAC58      --------->DAG2              ------>NtERF2                           ---        <---------ANAC58     ---------->DOF2            <---------LBD16                           <--    --------->CCA1(2)     --------->YAB1<---------DEAR3(2)--------->LBD16                    -------- ----------->ARR10       <---------ATHB12<------NtERF2--------->GLK1(2)   --------->MYB52(2) -------- ---->MYB52(1)       ------------>CBF  <---------DEAR3(1)<---------LBD16<--------P     ---------->DOF2   actgagatttgagtggttgaatgtccaatgaaaaagcatcgtcggcataaacaaaaattccggcgaaatcaaaggttagttcaaagtatcaaagcgcgaa  18343500                                                         --------->ANAC58                                            <---------ANAC58                                        --------->ZAT2   --------->ANAC58                                        <---------ZAT2   --------------->AtSPL8                                        --------->At4g35610                                        <---------At4g35610                                      <-----------RAV1(2)--------------->AtSPL3    ----------------->AGL1   <---------ANAC58         <---------SPL7<---------ANAC58 --------ICU4                <---------ANAC46       <---------------AtSPL3   --------->O2 ------->YAB1                <---------ANAC58       <---------------AtSPL8  ------>NtERF2          -- ------>ICU4              --------->GLK1(1) <---------ANAC58        <---------ANAC58    <---------ARR11(3) -------ATHB12            <---------GLK1(1) <---------ANAC46     <----------DOF2        --------->ARR11(3) ->ANAC58         <------ZmHOX2a(1)  <---------At4g35610--------->SPL7     <---------ALFIN1   ------- ->ANAC58----------->GT1<------ZmHOX2a(1)  <-------TEIL <-------TEIL<---------ANAC46   <---------At4g35610   atcatgaccaattgtgaaaaggatgaggaattcgtgtgcatcagctgcgtagaagaggtacggtactctttcgtgagccacctctctgaagctctccgtc  18343600                                                                             <---------At4g35610                                                                             <---------ZAT2                                                                          ---------->DOF2                                             <----------DOF2           <---------HSFB2a(2)                                         ------>ZmHOX2a(2)             --------->HSFB2a(2)                                       <---------ARR11(3)            <------ZmHOX2a(2)                                       --------->ARR14(2)           --------->ARR11(3)             <-----------RAV1(1)       <---------ARR14(2)           <---------ARR11(3)    -----------        --------->YAB1        <---------ARR11(3)                ---------->DOF2     <---------GLK1(1) --------->DAG2          <---------REM1(1)   <---------DAG2  --------->ANAC58--------->ZAT2  <------- -------->DOF2 --------->ALFIN1        --------->ARR11(3)    --------->ANAC58--------->At4g35610   <- -->LBD16 <---------AHL20(2)  --------->ARR11(3)           <-----------RAV1(2)      --------->GLK1(1)   gaaaaggcataaataatgtggtcgtagatgtagatatcgatgatctgcttttcaaggagtctcaggcaaagatcgagaaagctggggtttctgtgatggt  18343700  Previous    Next  AGI:  At5g45250.1    Description:  RPS4 (RESISTANT TO P. SYRINGAE 4). similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT3G51570.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G36150.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G45060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64653.1); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains Range:  from: 18339141    to: 18343249    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g45260.1    Description:  RRS1 (RESISTANT TO RALSTONIA SOLANACEARUM 1); transcription factor. Identical to Probable WRKY transcription factor 52 (WRKY52) [Arabidopsis Thaliana] (GB:Q9FH83;GB:Q689Y9;GB:Q8GZ83;GB:Q9FH84); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G36140.1); similar to TTR1 (WRKY domain family protein 16), transcription factor [Arabidopsis thaliana] (TAIR:AT5G45050.2); similar to TTR1 (WRKY domain family protein 16), transcription factor [Arabidopsis thaliana] (TAIR:AT5G45050.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16318.1); contains InterPro domain Disease resistance prote Range:  from: 18343430    to: 18349836    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version