Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              <---------YAB1        --------->AtMYB61        <---------ALFIN1     <---------ATERF1(1)     ------>NtERF2     --------->ORA47(1)    --------->DEAR3(1)    ------->GAMYB                                        ------->TEIL    --------->RAP2.6(2)                     <---------ANAC58   --------->DEAR3(2)             --------->HSFB2a(2)    --------->ARR14(2)  --------->ZAT2             <---------HSFB2a(1)         --------->GLK1(2)                      -----  <---------ZAT2             --------->HSFB2a(1)    --------->MYB52(1)                          <----  --------->At4g35610        --------->HSFC1(2)    --------->ICU4                               -----  <---------At4g35610        <---------HSFC1(2)  --------->YAB1     <---------AtLEC2           <----- -----------RAV1(2)        <---------GLK1(2)<---------ANAC58       <-------TEIL             >>>>>>>>>TBF1 ---->ZmHOX2a(1)      <---------ANAC46 --------->ICU4    <---------ARR14(2)              >>>>>>>>>TBF1   cctcagccgaccacatgataagagccttggaatcttctgtaatgagtcttgtcataacgaatctgcaaatgcatgaaaatttagatgggaagaagaagaa  18281500           ---------->DOF2        <---------TOE2(3)                       ---------->DOF2     <---------ATHB12               <---------ZAT2 ---->GLK1(2)    --------->AHL20(2) <---------At4g35610              ---------->DOF2          <------ -----ARR14(2)   <---------AHL20(2) --------->ZAT2                 <---------YAB1      --------->ETT(2) ---->ARR14(2)----------->GT1       --------->At4g35610  <------ZmHOX2a(1)             <---------ETT(2) ----GLK1(2) ----------->GT1       <-----------RAV1(1)<------ZmHOX2a(1)              --------->ZAT14<   tctgcaaatgaaggaaagtttaaatgaaaacaaaactctgctgcattcaacaaagaggaggagaagactatgaaagaccattgtctctgtagccagagtc  18281600                                           --------->YAB1                                          <---------YAB1                     <---------ICU4 <---------ARR11(3)                                  --------->TOE2(3)        <---------ANAC58            --------->ARR11(3)    --------->MYB46(3)      <---------ANAC58        <---------ANAC58      --------->YAB1       <-----------GT1                <---------ANAC58 -----HVH21       <---------bZIP60(1) <---------ANAC58  ------>MYB46(1)      <----------DOF2 ---------ALFIN1  --------->bZIP60(1) <---------ANAC58  ------>MYB83  <-----------RAV1(1)   actcacctctgcttgtgatcacatcatgtctaacataagttcttgtcatagtataacccaacaactcttgaactgttgtcttttgcttaatcttatccaa  18281700                                                   --------->TOE2(3)                                                   --------->TOE1(3)                                               ----------->HVH21                      ------>ZmHOX2a(1)      <---------ANAC58                   ---------->ID1            <---------ANAC58     <-----------HVH21                  <-----------GT1      <---------YAB1            <----------DOF2            <---------AHL20(2)        <-----------GT1      -------->P          <-----------GT1     <-            --------->AHL20(2)      <---------AHL20(2)    <-----------GT1   <---------ICU4      <----   atattgttttatatttattttttcctattgtttcatattttatccttgtgtgaccttaatctaccctctttcagagaaaaattacaaatcaaatctaata  18281800              <---------GLK1(2)           --------->YAB1                                   <---------ARR14(2)         --------->ARR11(3)                                 <---------ZAT14         <---------ARR11(3)                                 --------->ARR14(2)        --------->CCA1(1)                               --------->DAG2        --------->RVE1(1)                              ---------->DOF2  ================================================================MADS_MADS                       <--  --------------->AGL15                           --------------->AGL15           ---------->DOF2 --- ----------GT1<---------ICU4                      <---------------AGL15      --------->DAG2      ---- -----ICU4<---------YAB1---------->DOF2       --------->YAB1--------->ZAT14 ---------->DOF2      ----   tttactaaaaatatcataatctcatagaaagaaccaaaaaaaaaacaatcttcaaaaaaaagtatactcttcttaagaaaaagctaaagagacagaaaca  18281900    <---------CCA1(2)  <---------ANAC46            --------->ARR14(2) <-------TEIL                 <---------ARR14(2) -------HSFC1(2)             <-------GAMYB  *TSS ------>HSFC1(2)            <---------DEAR3(2)                   <------------------------ANAC81 ----->ANAC58               <---------MYB46(3)                  <-----------GT1  ------>ZmHOX2a(1) ----->ANAC58              <---------DEAR3(1)      <------------------------ANAC81           <-------   agcttcgtatatttctcgctgctatttaggcggttctcttctattctcttctcttctcttctctattttctcttctcttcttcctgctcaatctctgctt  18282000                                                                    XXXXXXXXXXXXXXXXXXXX>MIR829.2        <---------At4g35610         --------->AHL20(2)      ----------->GT1             <---------ANAC58        --------->At4g35610         <---------AHL20(2)      --------->ANAC58            <---------ANAC58 --At4g35610                       --------->AHL20(2)       --------->ANAC58  ---------->DOF2 ------>ZmHOX2a(1)   ctcaatcttcggctggaagtatcacagaaaaatcgaatttaaaaactgacctatatatcggtaagaaaaaacaaaaaccccaaagtagtttcgttcctac  18282100                                                                                     --------->LBD16                                                                                     <---------LBD16                                                                                    <---------ANAC58                                                                                    <---------ANAC46                                                                                    <---------ANAC58                                                                                   ------>ZmHOX2a(2)                                                                                   <-------TEIL                                                                                  <------ZmHOX2a(2)                                                                                 <---------ARR14(2)                                                                                 <---------ARR11(3)                                        --------->YAB1                           <---------AGP1                        --------->At4g35610                        <-----------RAV1(1)     xxxxxxxxxx               ------->TEIL          --------->WOX13(1)      <---------ANAC46    --------->ARR14(2) <              <---------AtLEC2     <---------YAB1            <---------ANAC58    --------->ARR11(3) <         ----------->HVH21    --------->ANAC46               <---------ANAC58   <---------GLK1(1)   <  <---------At4g35610   <---------At4g35610               ----------->TGA1  <---------ANAC46        <   ttgctgatgctgtgatgcatgtattcagcttcacaacatcattcaaaattttggatttttatgacgtttttgtgggttttgtagatccgtggaagtcgaa  18282200                                                                                     ----------->GT1                                                                              <---------TOE1(3)               --------->ALFIN1      <---------ANAC58                      --------->DOF5.7(2)             --------->CCA1(2)       <---------ANAC58                     --------->TOE1(3)   <------  ----------->GT1                 <--------P                              --------->TOE2(3)   <------ xxxxxxxxxx>smallRNA(fl3)       <---------MYB46(3)                      <---------TOE2(3)     ------- ---------ANAC58               <---------YAB1                           <---------TOE1(3)     <------ ---------ANAC46             --------->YAB1   <---------At4g35610      <-----------GT1        <------ ---------ANAC55(1)         <---------YAB1    --------->At4g35610      <---------DOF5.7(2)   <------- ---------ANAC58  ----------->GT1<-------GAMYB<---------ZAT2  ----------->GT1 <---------TOE2(3)     -   tttcgtgtaaaatagagatgggggaaaacgatgatggttgctcgactcagctaatcgatgggaatggtgaatttaacgttaagggtttggataatttcgt  18282300         <---------HSFC1(2)                     --------->ATHB12         --------->HSFC1(2)                     <---------ICU4        ------->TEIL                            <------------ATHB5  <----------ID1                                --------->YAB1                                     <- ---ANAC58                                     --------->ICU4            <---------ARR11(3)        == ---ANAC58                                     <---------ATHB12          --------->ARR11(3)        -- ---->GT1--------->HSFB2a(1)           <---------MYB46(3)               --------->YAB1             <- ---ANAC55(2) <-----------------AGL2   <-----------RAV1(1) ---------->DOF2              <----------DOF2 ---ANAC46 <----------DOF2<----------DOF2    --------->WOX13(1)   <---------ZAT6       <---------ANAC58 ----------------TaNAC69(2)          <-------GAMYB   <---------PCF2    <---------YAB1  <---------ANAC58 --------->DOF2<---------YAB1       <-----------RAV1(1)  ------>ZmHOX2a(1)  --------->GLK1(2)--------   gaaaaagacgaagctttctgattgtggtctttcttatgctgttgttgcaatcatgggtcctcaaagtagtggtatgatattctgagtttgcttttgttct  18282400  Previous    Next  AGI:  At5g45150.1    Description:  RTL3 (RNASE THREE-LIKE PROTEIN 3); double-stranded RNA binding / ribonuclease III. similar to RTL2 (RNASE THREE-LIKE PROTEIN 2), double-stranded RNA binding / ribonuclease III [Arabidopsis thaliana] (TAIR:AT3G20420.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38913.1); contains InterPro domain Double-stranded RNA-binding-like; (InterPro:IPR014720); contains InterPro domain Ribonuclease III; (InterPro:IPR000999); contains InterPro domain Double-stranded RNA binding; (InterPro:IPR001159) Range:  from: 18277668    to: 18281573    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g45160.1    Description:  root hair defective 3 GTP-binding (RHD3) family protein. similar to RHD3 (ROOT HAIR DEFECTIVE 3) [Arabidopsis thaliana] (TAIR:AT3G13870.1); similar to root hair defective 3 GTP-binding (RHD3) family protein [Arabidopsis thaliana] (TAIR:AT1G72960.1); similar to RHD3 (ROOT HAIR DEFECTIVE 3) [Arabidopsis thaliana] (TAIR:AT3G13870.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN63206.1); similar to root hair defective 3 GTP-binding protein [Triticum aestivum] (GB:AAS67855.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO47076.1); contains InterPro domain Root hair defective 3 GTP-binding (InterPro:IPR008803) Range:  from: 18281944    to: 18287510    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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