Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            <---------GLK1(1)                                                                     <---------At4g35610  <---------AHL20(2)                                                                     --------->At4g35610  --------->AHL20(2)                                                                  <---------MYB52(1)      <---------YAB1                                                                 <-------GAMYB           --------->AHL20(2)                                                             <-----------HVH21           --------->AHL20(1)                --------->ARR11(3)                        <---------At4g35610            <---------AHL20(1)                <---------ARR11(3)                        --------->At4g35610           --------->YAB1               <---------CCA1(2)                       ---------->DOF2    --------->GLK1(1)    <-----   <-----------GT1                             <----------DOF2<---------MYB52(1)--------->AtLEC2  ---   aaaaaaaaccatactctaaatcttcttgatcaagtcccatcgctcttaactttgcaattaagctgtcagttatctgaaatccatggagaaatataattaa  18275000              --------->YAB1           <---------ICU4           --------->YAB1          --------->ICU4        --------->YAB1                                 <---------TOE1(2)     --------->ANAC46                                 ------>ZmHOX2a(1)   <---------ALFIN1           --------->TOE2(3)   --------->ARR14(2)                                < ------GT1<---------YAB1   <-----------GT1 --------->ARR14(2)                                 <------ ------>TOE2(3)          --------->AHL20(2)<---------ARR14(2)            --------->YAB1     ---------   catcaacacatcataatcacaagagaattaaaccacaaaaacccaaatactgaatcctagttttccacaatttcatcaaaattcaaataaaacccagaat  18275100  --------->ANAC46  --------->LBD16                                                              --------->MYB46(3) <---------HSFB2a(2)                                                         ------>MYB83     ------- --------->HSFB2a(2)                                                         ------>MYB46(1) <------- ---------LBD16                                                              --------->MYB52(1)------ ---GLK1(2)                                                                 --------->MYB55(1)<------ >LBD16                                 <---------YAB1                     <---------MYB59  ---------   ttcccagaaaccagtcgttttgagaattgaagacgaagcattgtgatttacagagaagaaacagtaagagaagtaaacctaacgactctacgagtaccgg  18275200    --------->HSFB2a(2)     <---------ANAC46    <---------HSFB2a(2)     <---------ANAC58   <---------LBD16          <---------ANAC58                                             <------ZmHOX2a(1) -->HSFB2a(2)           --------->GLK1(1)                                   --------->TOE1(2) --LBD16                <---------HSFB2a(1)                                 --------->TOE2(2)     --- --->LBD16              <---------GLK1(1)                                  <---------HSFB2a(1)    --- ---HSFB2a(2)          <---------ARR14(2) --------->DAG2                   ----------->RAV1(2)    <-- >MYB52(1)             --------->ARR14(2)---------->DOF2                  --------->GLK1(2)       <--   aaatttgtggaagagattgtgaggggattttcgtgtgatttcaaaaaggagattgaagatgaaaatcgaagaagagaacctgcgattcgaaggagattga  18275300                                                                                                  <--                                                                                                 <---                                                                                                 <---                                                        <---------TOE1(3)                        ----                                                        <---------TOE2(3)                        ----                                                     <---------MYB52(1)                          <---                                                    <-------GAMYB                   ----------->GT1 < ------>At4g35610                   <-----------GT1<---------DEAR3(2)           ---------->DOF2  <--- ------>ZAT2                    --------->ARR11(3) <------MYB83  *TSS        <------NtERF2       ---- -------ZAT2                    <---------ARR11(3) <---------MYB46(3)      <---------DEAR3(1)   <---- -------At4g35610       ------>NtERF2              <------MYB46(1)       --------->CCA1(2) <---------   agctggagttgatacagtcgcttcgctggctgaagattttacacagtcgaagtcggttaagggaagaggtttaagagacggcgaaagggttttaaacagt  18275400    <---------ANAC58    <---------ANAC46    <---------ANAC58 -------YAB1 ------ARR11(1) --------ARR10                                 <------------CBF ----->GLK1(2)<---------DAG2                <---------ANAC55(2) ----->ARR14(2)                             --------->ANAC55(2) ------ARR14(2)                           <-----------GT1                                --------->ANAC55(2) ----------DOF2                    <---------ANAC46              --------->ZAT14        <---------TOE2(3) ------ARR11(3)                    <---------ANAC58          <-----------GT1           <-----------GT1 ----->ARR11(3)                    <---------ANAC58     <---------AHL20(2)    <----------DOF2 -----ARR14(1)<----------DOF2  <----------DOF2--------->ATHB12  <----------DOF2    <----------DOF2 --GT1     <-----------GT1     ------>ZmHOX2a(1)        --------->AHL20(2) ------>ZmHOX2a(1)   atctttgcgtttattacttttttttttgtcatcctttgcgtttattacttattggtatttaattcactttagtagtccttcttttctttttacgttttga  18275500                                        ------->GAMYB                                       <-----------------AGL1                                       --------->MYB46(3)                                       <-----------------AGL2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                     --------->YAB1         <---------ANAC46                           <---------ICU4                   ----------->GT1                         <---------TOE2(3)                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              ---------->DOF2       <---------ATHB12   <---------TOE2(3) --------->YAB1  <-----------GT1     <---------WOX13(1)--------->TOE2(3)<------ZmHOX2a(1)   attgttacccaaacttcaaagttgattaatatttgccaataaccacaattggcctctaaggagggtgtattcaaattagaatttaagaagaggctcggta  18275600                                              --------->MYB52(1)                                           <------NtERF2                  <------------------------ANAC81               <----------DOF2            --------->LBD16                 --------->YAB1            --------->ARR11(3)            <------NtERF2              <---------YAB1            <---------ARR11(3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         ---------->DOF2    <---------TOE1(3)                    --------->RAP2.6(2)     <---------DAG2    ----------->GT1    <---------TOE2(3)   <----------DOF2 <---------LBD16          <----------DOF2 ---------->DOF2   tagtttaaggcaaatgtctttgttttcttttttttttttttggccggaaaacgggagaagtctcccgctttattattcataacaaaagaaaaaagaacta  18275700                        >>>>>>>>>>>>>>>>>LFY          --------->ANAC55(1)          <---------ANAC55(2)          --------->ANAC58              ----------->RAV1(1)          --------->ANAC55(2)     <---------At4g35610             --------->ALFIN1          --------->ANAC58        --------->At4g35610           --------->LBD16          --------->ANAC46 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------LBD16                    ----   ------>MYB46(1)      <<<<<<<<<<<<<<<<<LFY                --------->ARR14(2)                -------   ------>MYB83 --------->TOE1(3) <---------HSFB2a(1)       <---------ARR14(2)             ---------- <---------MYB59--------->TOE2(3) --------->HSFB2a(1)  <---------TOE2(3)    ---------->DOF2--------->MYB52(1) ------->GAMYB<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <-----------GT1  ----------->GT1   --------->TOE2(3)   taaccgaacaaaacgtaaccttgagaccccattggcatcttccaacaaaatcggattaacaatatccggtggaagattaaaagaatagaaacctaaaggt  18275800                                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                                               --------->ANAC58                                                               --------->ANAC58                                                               --------->ANAC46                                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                         xxxxxxxxxxxxxxxx>smallRNA(i)                                                        ----------->HVH21                                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                      ============================================bZIP_DOF                                                      <---------O2                                                      --------->O2                                                      --------->TGA1a                                                      <---------TGA1a                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                    <---------MYB52(1)=========================MYC_MYB                           xxxxxxxxxxxxxxxx>smallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                           xxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          --------->ANAC46xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               <---------At4g35610 =============================MYC_MYB               --------->At4g35610 <-------GAMYB     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             <---------ZAT18      <---------MYB46(3) ------->MYC3                                 <xx    --------->DAG2 -------->P  ------------>AtMYB77  <-------MYC3                            <xxxxxxx   ---------->DOF2 =============================================MYC_MYB                   <xxxxxxxxxx ------>DOF2 --------->ZAT18   =================================MYC_MYB                  --------->ANAC58 ---->GT1  <xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            --------->ANAC58 >DOF2     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ARR14(2)     -------->P       ---------->DOF2   aaagaaaaagcatagttcgctaacccatccgctagacggttagcctccctatacacatgtgacacacggactaaccagtcccttgataaaaaagccatag  18275900  Previous    Next  AGI:  At5g45140.1    Description:  NRPC2 (nuclear RNA polymerase C 2); DNA binding / DNA-directed RNA polymerase. similar to NRPB2 (EMBRYO DEFECTIVE 1989), DNA binding [Arabidopsis thaliana] (TAIR:AT4G21710.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ79517.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64885.1); similar to putative RNA polymerase III [Oryza sativa (japonica cultivar-group)] (GB:AAP03366.1); contains InterPro domain RNA polymerase, beta subunit, protrusion; (InterPro:IPR007644); contains InterPro domain RNA polymerase Rpb2, domain 3; (InterPro:IPR007645); contains InterPro domain RNA polymerase Rpb2, domain 2; ( Range:  from: 18264455    to: 18275365    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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