Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         <-------TEIL                   --------->DAG2                   <---------TOE1(3)                   <---------TOE2(3)             ------>ZmHOX2a(2)            <------ZmHOX2a(2)                                                ------>ZmHOX2a(1)      <           <---------ARR14(3)                                               --------->TOE2(3)     ---           --------->ARR14(3)                                           <---------ANAC58         <---           <---------ARR14(2)                                           <---------ANAC58     <-------           <---------ARR11(3)                                  --------->RVE1(1)            ------>MYB46(1)           <---------AGP1                                     --------->ARR11(3)            ------>MYB83           --------->ARR11(3)                                 --------->GLK1(2)           --------->AtMYB61           --------->ARR14(2)      ------>NtERF2              <---------ARR11(3)      --------->MYB46(3)   ttctaagaaccaagatctcataaggttcaagtttcgatgccaaaaccccattctcgtatacaaaaatctctcttgcttccttatacaaacgaccaatctt  18250700          <---------------AGL15          --------------->AGL15       <---------ARR14(2)       --------->GLK1(1)       --------->ARR14(2)      <---------GLK1(1)      --------->GLK1(1)  <---------LBD16                                                                      ----------->GT1  --------->LBD16                                                                      --------->ANAC58 <---------O2                                                                          --------->ANAC46 <---------ANAC46                                                            <---------MYB52(1) --------->O2                               <---------------AtSPL3          --------------------->WRI1 ---------LBD16                   --------->ARR11(3)                        <-------GAMYB -------->HVH21     ---------->DOF2       --------->YAB1            <---------ALFIN1   --------->ANAC58 --------HVH21--------->YAB1  ---------->DOF2                ---------->DOF2--------->LBD16        -- --ATHB12----------------->AGL2   <---------ARR11(3) --------->bZIP60(1)   <---------ANAC46   -------   gtcacggggaatcccataatagcaaagaacatgaaagttctcaaacatggtactgccatcactcaaagcaccacattccgttgaatgaaacgcaaaatat  18250800                                                                          <----------DOF2                                                                         <---------ANAC46                                                   <---------MYB46(3)    <---------ANAC58     --------->ANAC58                      --------->ATHB12              <---------ANAC58     --------->ANAC58                    <---------WOX13(1)           <---------MYB52(1)     --------->ANAC46                   <------------CBF             <-------GAMYB ------->At4g35610           ----------->GT1     <------------CBF    <---------At4g35610 -->RVE1(1)         <---------HSFB2a(2)--------->ATHB12       ---------->DOF2   cagatggacgcaaacccaaactctcgaaaaatggttcaaactcattgatgggattgttgaagaataaagtccgttgctttcagtttcagtttgaataagt  18250900                                                                          <---------At4g35610                                                                        <-----------GT1                                                                    --------->AHL20(2)                                                                  <---------MYB52(1)                                                                <---------ANAC58                                                                <---------ANAC58 --------->At4g35610             ---------->ID1                                     <---------ANAC46 <-------GAMYB  <----     <----------DOF2   <-----------GT1                       --------->ARR14(2) <-----------RAV1(1) <---------YAB1<----------DOF2           <------ZmHOX2a(1)   <---------ARR14(2) <---------MYB46(3)   cttatgactttgtttgtctttcaaataacatccctaagtattaggagatagactagcatttcagttccgtttatttagcagtctgttgcattcttgttat  18251000                      ------>ZmHOX2a(2)                     <------ZmHOX2a(2)                     --------->GLK1(1)                    <---------ARR11(3)           --------->ANAC58                                 ---                    --------->ARR11(3)       --------->ANAC58                                     <--         <---------ARR11(3)                  --------->ANAC46                                --------   <-----------GT1  <---------AGP1           --------->ANAC58                          -------------- -----YAB1 ------>ZmHOX2a(2)       --------->YAB1--------->ANAC58                      <-------------   ctttgtaacttgatctatttaagatctctatcgtctatgagaataacacacaagttacacatttgttctctgagtcactagttcgtttacaacaagtggt  18251100     <----------DOF2 ------>At4g35610                *TSS -------At4g35610              --------->ATHB12 ->ALFIN1                     --------->ICU4                                    --------->ZAT6 ->AGL15                    --------->CCA1(2)                                 <<<<<<<<<<<<<<<<<LFY --AGL15               ---------->DOF2---------->DOF2             <---------LBD16   agcagagcttttgttcttaaacgctcaaagaaatgagtgagaaagatggtttgagcattccaaaattcgacggagattacgaacactgggcaatgctcat  18251200                                                                             <---------O2                                                                             --------->TGA1a                                                                             <---------ANAC46                                <---------YAB1                               ====================bZIP_DOF                               ------>ZmHOX2a(2)                             <---------TGA1a                              --------->GLK1(1)                            --------->MYB52(1)                              <---------GLK1(1)                           ----------->HVH21                              <------ZmHOX2a(2)                           ----------->TGA1                             <---------ARR11(3)                           ------>ZmHOX2a(1)                             --------->ARR11(3)                         ------>ZmHOX2a(2)                         <---------ANAC46                             <---------ARR11(3)         <---  <-----------ARR10    <---------MYB46(3)                         <---------ANAC55(2)            <---  --------->GLK1(2)   <---------AtMYB61               ------>NtERF2   --------->ARR11(3)        ----- <---------GLK1(2)    --------->ALFIN1  <---------AtLEC2          --------->ANAC55(2) ---------->DOF2   ggagaatctcatgaggtccaaggagtggtgggatctcattgagcatggagttatgcagccagagagaaacgtgatcctgacgggagcccaaagaacagag  18251300                                                                                                    -                                                                                                    <                             ---------->DOF2                                                        <                    --------->CCA1(2)                                                               -           <---------At4g35610      <-----------GT1                                          <------- ------ANAC58      <---------ARR11(3)                                    <---------YAB1<------ZmHOX2a(1) ------ANAC58      --------->ARR11(1)     <----------DOF2 --------->ANAC58      ---------->DOF2 ----- ---->ZAT2 --------->At4g35610   <---------ICU4           --------->ANAC58--------->ATHB12   --------   cttgcagagagtaagctcaaagatttgaaggcaaagaattacttctttgcttcaatcgacaaggcaactctgaagacgattgcaaagaaggacacagcta  18251400                                                            ------->GAMYB                                                         <---------ALFIN1 <---------CCA1(1)                                       --------->MYB52(1) <---------RVE1(1)                                   <---------ZAT18 -------->ARR11(3)                                   --------->ZAT18 ---------ARR11(3)                         <---------HSFB2a(1) ---------AHL20(1)                         --------->HSFC1(2)--------->ZAT14 -------->AHL20(1)           <-----------RAV1(2)---------->DOF2 --At4g35610          ---------->DOF2      ----------->GT1<---------ZAT2               <---------ZAT6 ----->DOF2<---------------------WRI1      <---------HSFC1(2)<---------ZAT14           --------->ALFIN1 ->At4g35610   --------->AtLEC2--------->LBD16<-------TEIL--------->ZAT2        <----------DOF2   ---   aagatatttgggagtccatgaaaacaaagtaccaggggaacaagaaggttcaaagcgcccaactgcagagactgcgaaggaactttgaagtgttagaaat  18251500                                          <---------MYB46(3)                                 <-------                                         <---------AtMYB61                                 <---------GLK1(2)                                         --------->ALFIN1                                --------->ICU4                                      <---------AtMYB61                          <---------SPL7                  <XXXXXXXXXXXXXXXXXXXXMIR861-5P                                <---------ANAC46       <---------ATERF1(1)    ---------->DOF2 <------NtERF2     --------->TOE2(3)--------->LBD16 ------->DOF2   --------->ATHB12   --------->ALFIN1----------->HVH21           <---------LBD16   gaaagagggagacaccattgatgggtatttctcaaaggtgatggtggtggcaaatgacatgagaaaccttggtgagagcatgccggatgcaaagattgtt  18251600  Previous    Next  AGI:  At5g45113.1    Description:  mitochondrial transcription termination factor-related / mTERF-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44451.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690) Range:  from: 18249504    to: 18250748    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g45116.1    Description:  transposable element gene. copia-like retrotransposon family, has a 6.2e-227 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family) Range:  from: 18251133    to: 18255155    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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