Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          ---------->ID1                  --------->AHL20(1)                  <---------AHL20(2)                 <---------AHL20(2)   --------------->AtSPL8   <---------------AtSPL8                                      <---------ANAC58 -------->ATHB12 --------->AHL20(2)                            <---------ANAC58 --------YAB1    --------->ATHB51                        --------->AHL20(2) ----->RAV1(1)   <---------ICU4                          <---------AHL20(1) ->LBD16        --------->ICU4                           --------->AHL20(1)              --------->YAB1 >ANAC46     --------->AHL20(2)                       --------->YAB1                     --------->TOE2(3) >ANAC58     <---------AHL20(2)       --------->ARR11(3) <---------AHL20(2)        <-----------GT1 >ANAC58  ----------->GT1   <----------DOF2         --------->AHL20(2)           <---------AHL20(2)   catgaatggtactagttaattattttgtttctttaactaaaatcatgtatacaaaataataaatttcttacttcgaatactattttttcaatgttagtag  18224200                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                                                   <-                                                 --------->AHL20(2)                               ---                                              --------->AHL20(2)                                -----                                              --------->YAB1                                   <-----                  <---------YAB1          --------->AHL20(2)                                   ------     <-----------GT1                      --------->AHL20(1)                                  -------    --------->KAN4(2)                     <---------AHL20(2)                                ------->TEIL   <----------TaMYB80 --------->AHL20(2) --------->AHL20(2)       <-----------GT1  --------->TOE2(3)   tttgtatattccctctatttctgattatatatagttttaaaaaaaaaattataaaataagtgttgttttcacttatctattcaaaacttaaatgtattta  18224300                             <---------AHL20(2)      ----------->GT1     --------->AHL20(1) <---------YAB1           <---------AHL20(2) ------->AHL20(2)         --------->AHL20(2) -------ATHB1             <---------ARR11(3) --------AHL20(2)         <---------AHL20(1) --------AHL20(1)         --------->ARR11(3) ------->YAB1       <-----------GT1                                                            ------ --------ICU4 <---------AHL20(1)                                                        <---------AHL20(2) ------>ICU4  <---------AHL20(2)    --------->ATHB12                                   <---------AHL20(2) ---->YAB1    --------->AHL20(1)   <---------AHL20(2)         --------->YAB1           --------->AHL20(2) ----AHL20(2)--------->YAB1<---------AHL20(2)                --------->ICU4        --------->AHL20(2) --->AHL20(2)--------->AHL20(2)    <---------YAB1           <---------TOE2(3)    >>>>>>>>>GATA-1<---- -->AHL20(2) <---------AHL20(2)<---------AHL20(2)   <---------REM1(1)          ----------->GT1 <-----   ataatttttggttaattatattttacaatatattttttttattggtagaattagatgtagttaatgatgttttacagaaaatagataaattaaatgagat  18224400                                                                                     <---------TOE1(3)                                                                                     <---------TOE2(3)                                  <---------AHL20(2)                             --------->YAB1                                  --------->AHL20(2)                      <---------AHL20(2)     <--- --->ARR11(3)                   --------->TOE2(3)        <---------ANAC55(2)    <---------YAB1   <--- -----RVE1(1)                 --------->ICU4             --------->ANAC55(2)  --------->YAB1  <------ ----ARR11(3)          ---------->DOF2   <---------At4g35610             --------->AHL20(2)<---------YAB1   ttttatgttttttttatgtgtgagacaaaggaaatattaattaagcagtccgattcaatatgtaatgtccacatattaattcataataaggttttgatta  18224500                     <------MYB83     <---------ARR11(3)                              <---------YAB1     --------->ARR11(3)                            --------->YAB1                                  <-    <------ZmHOX2a(1)<------MYB46(1)               <--------HAHB4                         *TSS     -- ------TOE2(3)      --------->MYB111(1)--------->ANAC55(2)                                <---------YAB1 ------YAB1         --------->MYB46(2) <---------ANAC55(2)                       ------------>CBF <-- ---WOX13(1)       <--------P    ------------>CBF <---------YAB1             ---------->DOF2      ---   atattaggatattagcccagagtaggtgaagaagtttcaatatgtaatctctattattatacatatagcctatagagaagaaagacaatattcttcttgg  18224600                                                                                                  <--                                                                                                  <xx                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                -----                                                                                               <-----                                                                                               ------            <---------ICU4                                                                     <-----            <--------ATHB1                                                                    -------            <---------AHL20(2)                                                                <------NtERF2            --------->AHL20(2)                                                                -------            --------->ATHB51                                                                 ------>NtERF2           --------->ICU4                                                       xxxxxxxxxxxxxxxxxxxxx           <---------YAB1                                                   --------->ALFIN1 <-------         --------->YAB1                                                   <---------DEAR3(2) --------       <---------ARR11(3)                                                <---------DREB2C(2) <-------       --------->ARR11(3)                                               <------NtERF2       <--------      --------->YAB1         --------->ANAC58              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<----     <---------TOE2(3)       --------->ANAC58         --------->WRKY12 ------>NtERF2        ---------     <---------YAB1         --------->ANAC46          --------->WRKY38(1)<---------DEAR3(1) <-------- --------->TOE2(3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          --------->DEAR3(1)    --------- --------ARR11(3) --------->At4g35610    --------->HSFB2a(2)          <---------DEAR3(1)   --------->ATERF1(1) ------->ARR11(3) <---------At4g35610    <---------HSFB2a(2)          --------->ANAC46     <---------LBD16 -------GLK1(1) <-----------GT1  <------NtERF2       <---------MYB52(1)<---------RAP2.3(1)<---------ATERF1(1) ------>GLK1(1)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ATHB12----------->HVH21 <-----------GT1<   aaatcttaagataataatttagctctctcccaggcaccattttcgagacaccatcgttggccatgttttccgacgccggtggagttttaactcgccggcg  18224700 -------ANAC46 xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----->ATERF1(1) ----->ALFIN1 ---NtERF2 ->NtERF2 ----DEAR3(1) --->DEAR3(1) ----ANAC46                                                                                <--------- -->ATERF1(1)                                                                            <----------- -->RAP2.3(1)                                                                            ------------ x>smallRNA(se3)                                                                        <------------ --RAP2.3(1)                                                                            <------------ ->LBD16                                                                                <------------ --ATERF1(1)                      --------->ARR11(3)                                <---------------- -DEAR3(1)                        --------->ARR14(2)                      --------->ARR14(2) -----SPL7                        <---------ARR11(3)                      --------->GLK1(2)<---------DAG2 >DEAR3(1)<------------------------ANAC81                         <---------ICU4  ------>ZmHOX2a(2) -ATERF1(2)               <----------DOF2                  <----------DOF2<---------ARR14(2)       <x >ATERF1(2)         <---------At4g35610 ============================================================= ------NtERF2       --------->At4g35610 <---------------AGL15    <---------DAG2 <---------AGP1   ----   tcgggatgtctcgtcttctcttagcttccttttcaagacctgctcattttagttctgttttctttcaatttttgcgaatttggatctatttctctttttg  18224800                        --------->ANAC55(2)                        <---------ANAC55(2)                      --------->CCA1(2)                     <---------ARR11(3)                     --------->ARR14(2)                     --------->ARR11(3)                     <---------ARR14(2) -DOF2        --------->ARR14(2) ----AGL15   <------NtERF2----------->HVH21 --->AGL15   --------->ATERF1(1) -----AGL1  <---------ATERF1(1)                                                          <---------MYB46(3) -----AGL2 <---------ANAC46                       ------>NtERF2           ------>ZmHOX2a(1)         - -----AGL3 <---------ANAC58                       --------->LBD16     <---------ARR11(3) <------MYB83 --------ANAC81   --------->LBD16               <---------LBD16       --------->ARR14(2) --------->MYB52(2) xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         --------->ALFIN1          <---------ARR14(2) <------MYB46(1) ====MADS_MADS<---------ARR14(2)          --------->ALFIN1   ------>ZmHOX2a(1)          <---------TOE2(2) ------>ID1<---------ANAC58       ---------->DOF2<---------ANAC46    <---------CCA1(2) <---------MYB52(1)   gcctcttcccatggcgtctccgagatatgtgacagagaaagaaggtgtgttccggcgagtctccttcttccatatcctctgttcacaacgttggtttcga  18224900                                                                                            <<<<<<<<<GATA-3                                                                                            <<<<<<<<<GATA-1                                                                                            <------ZmHOX2a(2)                                                                                            <<<<<<<<<GATA-4                                                                                            <<<<<<<<<GATA-2                                                                                            <--------                                                                                           <---------AGP1                                                                                           <---------ARR11(3)                                                                                           --------->ARR11(3)                                                                                          <---------CCA1(2)                                                                                         <xxxxxxxxxxx                                                                                     ------->TEIL                                                                                     <---------AGP1                                                                                     <---------ARR14(2)                                                                                     --------->ARR14(2)                                                                                     --------->ARR11(3)                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <---------ATHB12                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                              ------>ZmHOX2a(2)             --------->GLK1(1)                                               <------ZmHOX2a(2)             <---------GLK1(1)                                              <---------ARR14(2)           <------ZmHOX2a(1)                                                --------->ARR14(2)    <--     ---------->DOF2                                      ---------->ID1<---------LBD16------>ZmHOX2a(2) ---------->GT1                   <-----------GT1       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)------>ZmHOX2a(2)   agtcgtcaaaagaggaatcccttgattccaactgtttttcatctttgaaatatgagatttgtctcactgtttctctcggatccaatggatctagatctct  18225000                --------->HSFC1(2)                --------->HSFB2a(1)                <---------HSFC1(2)                <---------HSFB2a(1)              --------->ARR11(3)          --------->LBD16        <---------HSFB2a(2)        --------->LBD16        --------->HSFB2a(2)                                                                <---------       <---------LBD16                                                                <---------At4g35610   --------->GLK1(1)                                                                  --------->At4g35610   <---------GLK1(1)                                                            <---------ATHB12  <-----------ARR10           --------->ARR14(2)                               --------->ANAC58 -GLK1(1)--------->LBD16      <---------ARR11(3)                               --------->ANAC58 xxxxxxxxxxxsmallRNA(se3)     --------->ARR11(3)                <---------TOE2(3)--------->YAB1 xxxxsmallRNA(se3)            <---------ARR14(2)             --------->AHL20(2)--------->ANAC46 xx>smallRNA(si3)<----------DOF2   <---------ETT(2)         <----------DOF2--------->HSFB2a(2) -------LBD16 <---------ARR11(3)   --------->ETT(2)   ------>ZmHOX2a(1)    <---------HSFB2a(2)      <   ctcgggtctccccgaagaactttctcaccgaatatcgtcgacaatacttctacctcctcgcgttttaatgaagacttctccaagcatcatctgcattttg  18225100  Previous    Next  AGI:  At5g45095.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G08593.1); contains domain Ribosomal protein S5 domain 2-like (SSF54211) Range:  from: 18224590    to: 18226272    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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