Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           ----------->GT1                                        --------->LBD16                                        ------>ZmHOX2a(1)     <-----------HVH21         --------->SPL1(2)    --------->TOE1(3)          --------->SPL7    --------->TOE2(3)         <---------SPL1(1)   <---------HSFC1(2)         --------->SPL1(1)   <---------HSFB2a(1)      <---------ANAC58   --------->HSFC1(2)       <---------ANAC58 -------HSFB2a(2)          --------------->AtSPL3         --------->GLK1(1) -----ATHB12               <---------------AtSPL3   --------->MYB52(1)            <---------WOX13(1) -->WOX13(1) <---------ANAC58<---------SPL1(2)   <---------ICU4         <---------ETT(2) >WRI1       <---------ANAC58<---------SPL7      --------->YAB1  --------->ZAT2 --------->ATHB12-----   cgagaaccttcacgagcttgtcaagagataccgtacggtttcctggtaaaatcataacagaaaccctagctctctcgaccattgattgagactcgttgga  18198900                                                                 ----------->TGA1                                                                 ----------->HVH21                                                                <---------ANAC58                                                                <---------ANAC58                                                               <------NtERF2   <---------ANAC58                                                               --------->At4g35610      ------>ZmHOX2a(1)                                                               <---------At4g35610------->TEIL                                                              <---------MYB46(3)  --------->SPL7                                                             --------->ALFIN1  <---------ANAC58 -----                                                             <---------RAP2.6(2)<---------SPL7  -----     --------->YAB1                                        <---------O2       --------------->AtSPL8     <---------ICU4                 <---------DAG2        <---------AtMYB61   <---------------AtSPL3    <---------ATHB12                <----------DOF2       --------->ALFIN1    --------------->AtSPL3   <-----------ARR10               <---------DAG2  <----------DOF2           <---------ARR14(2) <----  <---------ARR14(1)            <-----------GT1 --------->ARR11(3)           <-----------ARR10  <---- ----->DOF2                 --------->DOF5.7(2) <---------ARR11(3)       <------ZmHOX2a(1)     ------   aagcgaatcatcgctatcgatgaagacatcgtttacaccttttcgctggagagctttggagaggtggctgacgaaggagtatcgtacctcctctatgcag  18199000                                                                    ------>MYB46(1)                                                            --------->ANAC58                                                            --------->ANAC58                                                            --------->ANAC46         --------->ARR14(2)                             <---------ALFIN1                            < <---------REM1(1)                                     <---------SPL7                         ------- ---->ZAT2                   <---------ICU4          --------->PCF2 -------->P                ------- ---->At4g35610             --------->ICU4          <-----------HVH21                   --------->PCF5 -----ZAT2   --------->At4g35610               ----------->RAV1(2)  ------>MYB83 <------------CBF   - -----At4g35610<---------ZAT18 <---------YAB1<---------ANAC58     --------->AtMYB61     --------->TCP16(1) ->TEIL  <---------ARR14(2) <---------YAB1   <---------ANAC58    --------->MYB46(3)     <---------PCF2   ctgatgtagacgatttgctcactctcggtcattattttagaaactgtgcgtctgggtcgcacccgaaaccaactctctaaaacgattgtggtccctaagc  18199100                                      --------->WOX13(1)                                    --------->WRKY18(1)                       --------->ANAC46                       --------->ANAC58 --------->MYB46(3)                    <---------ATHB12             --------->YAB1       --------->ANAC58                            ------------>CBF      -        ------------>CBF          --------->ANAC58                           --------->ANAC58       - ---------ZAT14        --------->ANAC58 <---------ATHB12                     --------->ANAC58      <- -->ANAC58  <---------ATHB12XXXXXXXXXXXXXXXXXXXX>MIR398A             <------ZmHOX2a(1)------>ZmHOX2a(1) -->ANAC58<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                <---------ANAC46 --------->ANAC46    ---- -------->ZAT14      <---------ALFIN1<---------WRKY12  <---------MYB46(3) --------->MYB46(3)     ----   actgaagttggccaatggtagtcgcactccattctcaagtcaaccattctcaaacagttgttgagggagaaggagaaccactcaattcctagctaaaaac  18199200                                                                    --------->ATERF1(1)                                                                   --------->ATERF1(1)                                                                   ------>NtERF2                                                                  <---------RAP2.3(1)                                                                  <---------ATERF1(1)                                                                  ------>NtERF2------>ZmHOX2a(1)                                                                 <---------DEAR3(1)                                                                 <---------ANAC58              ------            ----------->GT1                                      <---------RAP2.3(3)           <-----           --------->DAG2                                        <---------RAP2.6(2)          -------          ---------->DOF2                                        <---------RAP2.3(2)        --------- ----------->AtMYB77                                             <---------ANAC58<---------ALFIN1---- ---------->RAV1(1)                                    ---------->ARF1   ------>ZmHOX2a(1)  <-------- --------WRKY12                                    <---------ANAC58<---------ATERF1(1)     --------->MYB46(3) ----->TOE1(3)                                     <---------ANAC58<------NtERF2--------->MYB46(3)--- ----->TOE2(3)                            <------------CBF      --------->RAP2.6(3)   <-----------HVH21   gtcaacagttggaaaagtaaacttattagatgattcaacttgcaaattgtctgccttgtctcccatggcggcctcctcttcctccaccggtctcccacca  18199300                                    --------->ANAC46                                  <-----------GT1                                --------->CCA1(2)                               --------->ARR11(3)                               --------->ARR14(2)                               <---------ARR14(2)     --------->ANAC55(2)       <---------ARR11(3)     <---------ANAC55(2)--------->REM1(2) --->AtMYB61           --------->ALFIN1            --------->ANAC58 ----ALFIN1           --------->LBD16              --------->ANAC58 -->MYB46(3)          <---------LBD16             --------->SPL7 >ANAC46             <---------ANAC58       <---------GLK1(2) ----->ANAC46        <---------ANAC46       <---------ARR14(2) -ALFIN1   --------->YAB1    ----------->ARR10<-------TEIL                             ---------->DOF2 -------->RAV1(1)    <---------ANAC58       --------->ARR14(2)      <----------DOF2 --------->TOE2(3)   caacatcaagtattcatcaatttccgtggagaagatttacgactcggattcgtaagccatctagtagaagctttagaaaacgataacataaaagtcttca  18199400                                                                                             --------                                                                                          <-------TEIL                                                                                          <---------ZAT14                                                  --------->ANAC55(2)                     --------->ZAT14                                                  <---------ANAC55(2)              --------->LBD16                                                 <-------TEIL                      <---------HSFB2a(2)                                                --------->CCA1(2)                  --------->HSFB2a(2)                      ------->TEIL             <---------ARR11(3)                 <---------LBD16              ---------->DOF2           <-----------GT1                          <---------LBD16   --       --------->ANAC46             <----------DOF2                    --------->STY1(2)  --------->ZAT18   tcgacaactacgcagacaaaggcgaacctttagaaacacttttaaccaagatacatgactccaaaatcgctctagctatcttctccgggaagtacactga  18199500                                                                                            ---------                                                                                       <------ZmHOX2a(2)                                                                                      --------->ARR11(3)                                                                                      --------->ARR14(2)                                                                                      <---------ARR14(2)                                                                                    <-------TEIL                                                 ----------->GT1                   <--------P                                       <---------ANAC46                      <---------REM1(2)                                       <---------ANAC58                     <---------HSFB2a(2)  <---                                       <---------ANAC58               --------->ARR14(2)<-------TEIL         <---------ANAC58          <---------GLK1(2)                 =========================HOX2a_HOX2a        <---------MYB46(3)   <---------YAB1     --------->DAG2       ------>ZmHOX2a(1)<---------ARR11(3) ->ANAC46<---------ANAC58  --------->YAB1     ---------->DOF2        <---------CCA1(2)--------->AGP1 ------->YAB1             <---------YAB1 --------->ALFIN1  ---------->ID1   --------->HSFB2a(2) <----   atcaacatggtgcttgagagagctagcgatgataaaagattgtgtggagaaaggtaaacttgttgctattcctatcttctacaaggtagatccatccact  18199600                                                     ----------->GT1                                                     <---------bZIP60(1)                     <------MYB83               --------->ANAC55(2)                    <---------DEAR3(1) =============HOX2a_HOX2a                    --------->MYB46(2) ------>ZmHOX2a(2)                   --------->ZAT14    <------ZmHOX2a(2)                   <---------ZAT14    ==============HOX2a_HOX2a                  --------->ARR14(2) --------->AGP1  --------->bZIP60(1)                  <---------ARR14(2) <---------ARR11(3)                  <---------MYB52(1) --------->ARR14(3)                 <---------ZAT2      <---------ARR14(2)                                       <------      <-----------HVH21              <---------ARR14(3)                         --------->ANAC58     --------->ALFIN1<------MYB46(1) --------->ARR11(3)                         --------->ANAC58 >MYB46(3)      <---------MYB46(3)   --------->ARR14(2)<---------YAB1    ----------->GT1     -------- --------HVH21--------->ZAT18       <---------GLK1(1)<---------ANAC46--------->DAG2          <------- -----ZAT6    <---------ZAT18<----------DOF2 <------ZmHOX2a(1)    ---------->DOF2  <----------DOF2---   gttagaggtgttagagggcagttcggtgatgcttttagagatcttgaggaacgtgatgtgattaagaagaaagagtggaaacaagctttgaagtggattc  18199700      <---------WOX13(1)    --------->ATHB12              --------->At4g35610  <----------DOF2                 <---------At4g35610 <---------ANAC58                 <---------ZAT2 <---------ANAC58                --------->MYB111(2) ---GLK1(1)                ---------->DOF2                                             <---------ICU4 ->ARR14(2)           --------->ANAC46 <----------DOF2                           <----------DOF2 --ARR14(2)  <-----------GT1 --------->DAG2                          ---------->DOF2   --------->ATHB12 --->ZmHOX2a(1)  --------->ZAT14<--------P   <----------DOF2   <-----------GT1------->TEIL  <--------   ctggcttaattggtatcactgttcacgataaaaggtagctgcttttgctctattggtttgagtattaacccaaaagcttgaacctttagtgattacaatt  18199800  Previous    Next  AGI:  At5g45050.1    Description:  TTR1 (WRKY domain family protein 16); transcription factor. Identical to Probable WRKY transcription factor 16 (WRKY16) [Arabidopsis Thaliana] (GB:Q9FL92); similar to RRS1 (RESISTANT TO RALSTONIA SOLANACEARUM 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G45260.1); similar to RRS1 (RESISTANT TO RALSTONIA SOLANACEARUM 1) [Arabidopsis thaliana] (TAIR:AT5G45260.2); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G36140.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16320.1); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro Range:  from: 18194141    to: 18199032    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g45060.1    Description:  disease resistance protein (TIR-NBS-LRR class), putative. similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT3G51570.1); similar to CSA1 (CONSTITUTIVE SHADE-AVOIDANCE1), ATP binding / protein binding / transmembrane receptor [Arabidopsis thaliana] (TAIR:AT5G17880.1); similar to RPS4 (RESISTANT TO P. SYRINGAE 4) [Arabidopsis thaliana] (TAIR:AT5G45250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64653.1); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain AAA Range:  from: 18199265    to: 18203722    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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