Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                <---------ANAC58                                                                              <---------ANAC46                                                                           <---------MYB52(1)                                                                        ------>ZmHOX2a(2)                                                                        =============================                                                                       <------ZmHOX2a(2)                                                                       ==============================                                                                      <---------AGP1                                                                      <---------ARR14(2)                                                                      --------->GLK1(2)                                                                      ------->TEIL                                                                      --------->ARR14(2)                                                                     <---------CCA1(2)                                                                   --------->ANAC58                                                                   --------->ANAC46                                                                   --------->ANAC58              <---                                                                   --------->ANAC55(1)           ----                                                                  <---------LBD16               <----                                                      ----------------------->TaNAC69(2)        -----                                                  --------------------->WRI1  <---------ANAC58 <-----                                               >>>>>>>>>>>>>>>>>LFY--------->ANAC55(2)  --------->ANAC58                                        --------->HSFB2a(1)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        --------->At4g35610             <---------HSFB2a(1)     <---------REM1(2)       --------->ANAC58      <---------ZAT18    <---------YAB1--------->GLK1(2) --------->ATHB12<-----------RAV1(1)  -------   acgagtagtgagcccaagaacgtagtcatcaatggaacgagaacctttcttccattgtttgatttgttcacggatctgttgcttgtggccacggctagga  18163500                                        --------->ALFIN1                             ------>ZmHOX2a(2)                            <------ZmHOX2a(2)                            --------->CCA1(2)                           --------->ARR11(3)          <---------WRKY12 <---------ARR14(3)        <-----------HVH21  <---------ARR11(3) <---------ANAC58          <-----------ARR10 <---------ANAC46          --------->ARR14(3) <---------ANAC55(2)       --------->ARR14(2) ----------->RAV1(2) --------->ANAC55(2)       <---------AGP1     <---------ANAC58            ------->GAMYB <---------ANAC58          --------->AGP1<---------MYB46(3)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) =HOX2a_HOX2a              <---------ARR14(2) <---------ANAC46         ----------->RAV1(1) =HOX2a_HOX2a             <---------CCA1(2)   <---------ANAC58       --------->LBD16        ------>NtERF2 ------GLK1(1)           ----------->ARR10 <--------P               --------->ANAC58 --------->DEAR3(1) ----->GLK1(1)       --------->ANAC58   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      ------>NtERF2 -----ARR14(2)       --------->ANAC46   <---------AtMYB61           --------->ANAC46<------NtERF2 ---->ARR14(2)       --------->ANAC58  xxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxsmallRNA(i) -ZmHOX2a(1)      --------->ARR14(2) <---------AtMYB61      ----------->GT1      <---------ABI4(2) ---->ARR10       <---------ARR14(2)<------NtERF2 ----------->HVH21 --------->ANAC58--------->DEAR3(2)   tttgcgtaagtgtcaacgagtttacgccagatctgggcagaggtggtagcctgggacaagagaggttgaaccgcaacagagatggcaccgatgaggccag  18163600                                                                                   <-------TEIL                                                                                  --------->ARR14(2)                        --------->LBD16                                           <---------ARR14(2)                       --------->HSFB2a(2)                                 <---------ANAC46                       <---------HSFB2a(2)                                 <---------ANAC58                    --------->ARR14(2)                                     <---------ANAC58                    <---------ARR14(2)                                   <---------ANAC46                 <---------ANAC58                     --------->ZAT6    <---------AtMYB61                 <---------ANAC58                ----------->GT1        --------->ALFIN1                 <---------ANAC46       <---------ARR14(2)             <---------ZAT14              ------>ZmHOX2a(1)         --------->ARR14(2)       --------->At5g28300            <xxxx            ----------->RAV1(2)     <---------LBD16  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     ------   agtaaatgagtttatcctggcgtttccagagtttgtattctggattgggagaggtaacaccatggacagtgactgtggtgtgaggttcttcgatcgaacc  18163700                                                      --------->O2                                                      --------->TGA1a               <-----------HVH21                      <---------O2         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <---------TGA1a        --------->TOE2(2)                             =====================MYC_MYB        --------->TOE1(2)                             ====================================bZIP_DOF        ------->GAMYB                               <---------ALFIN1       --------->MYB46(3)                         ------>NtERF2                <----------DOF2       --------->DEAR3(2)                        --------->bZIP60(1)         --------->At4g35610       <------------AtMYB77                      <---------bZIP60(1)         <---------At4g35610     --------->MYB52(1)                          --------->ANAC58            <---------ZAT2     --------->ARR14(2)                          --------->ANAC46  <-------GAMYB   ----------->HVH21     <---------ARR14(2)                          --------->bZIP60(2)     <-----------HVH21  --------->ANAC46                               --------->ANAC58 <---------MYB46(3)  --------->ANAC58           ===================================bZIP_DOF<---------bZIP60(1)  --------->ANAC58           ---------->DOF2   <---------ATERF1(1)--------->MYB52(2) xxxxxxxxxxxxxxxxxxxsmallRNA(i2)        ------->TEIL----------->RAV1(1) --------->bZIP60(1) --->MYB46(3) --------->bZIP60(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   --------->ZAT2   atcaacgtaaccggcgaggtcatacccatccaatagcgcatgaacttgacgacgccacatgagaaagtttgttgatgtcagctttgtgacattggacatg  18163800                                                                       ------->TEIL                                                                    <---------REM1(1)                                                              <---------ARR14(2)                                --------->MYB52(1)           <------NtERF2                            --------->REM1(1)               --------->LBD16                            --------->MYB46(3)             *TSS   --------->YAB1               ------                        --------->At4g35610                --------->RAP2.6(2)           --------->REM1(2)              ----------->GT1  --------->MYB46(3)         <---------LBD16            <---------ZAT2        <------ZmHOX2a(1) ----------->RAV1(1)   <------ZmHOX2a(1)--------->ICU4     --------->ANAC58      <---------TOE2(3)--------->ANAC46      <------ZmHOX2a(1)--------->ARR14(2)    --------->ANAC58   ttcacattgaggagagaggtagaatcagcaacaacaacggtttctgaggaggaagacatagccggaaatgatgaagcttgaagagcaagcttgtagagaa  18163900                                            <----------DOF2                                          <----------DOF2                                        <------NtERF2                             xxxxxxxxxxxxxxxxxxx                                        --------->ATERF1(1)                    --------->HSFB2a(2)                                       <---------ATERF1(1)                  <----------DOF2       <xx                                       <---------DEAR4(2)                --------->ARR11(3)      <xxx                                       <---------ERF1                    <---------ARR11(3)     xxxxx                                       ------>NtERF2                    <------MYB83        xxxxxxxxx                                       <---------RAP2.3(1)              <------MYB46(1)    XXXXXXXXXX                                      <---------RAP2.6(2)              --------->MYB59   --------->ZAT14                                      <---------RAP2.3(2)         <---------AHL20(2)     <---------ZAT14                 >>>>>>>>>TBF1        <---------DEAR3(1)          --------->AHL20(1)<xxxxxxxxxxxxxxxx  --------->ALFIN1  ---------->DOF2   <---------RAP2.3(3)         --------->AHL20(2)xxxxxxxxxxxxxxxx>smallRNA(i) ---->DOF2    >>>>>>>>>TBF1          --------->ATERF1(1)         --------->AHL20(2)<xxxxxxxxxxxxxxxxx   agaaggggagcgagaagaagaagaaaggtcgaagagagaggcggctcttttgttttaaaaaaaaaaaaaaaattaggtcttttagaatcactgctctgat  18164000                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                <---------YAB1            <xxxxxxxxxxxxxxxxsmallRNA(i)            ----------->GT1   --------->YAB1          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxx>smallRNA(i2)            --------->ICU4                                                        -- xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                --- xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    ----------->GT1                    --------->ANAC46     <------ xxxxxxxxxxxxxxxxxx>smallRNA(si3)  ------->TEIL     <---------------AtSPL8            --------->YAB1 xxxxxxxxxxxxxx>smallRNA(i2) <---------YAB1--------->REM1(1)          <---------ARR14(2)    --------- XXXXXXXXXX>MIR845A        --------->YAB1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------ICU4 --- xxxxxxxsmallRNA(i2)      <---------YAB1 <-----------GT1              --------->ARR14(2)    --------- xxxxxsmallRNA(i2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   accatgtgataagagagtgaattgtcttattatgatgaatgtgttacaacatatatagtacttagtctagggtatacacaactactaatgacaattatat  18164100    <---------AHL20(1)    --------->ARR11(3)              --------->GLK1(2)                                       --------- ---->ZmHOX2a(1)               ---------->DOF2                                     <---------ARR11(3) ------>TOE1(3)        <---------ARR11(3)                                          --------->ARR11(3) ---CCA1(2)          <---------AHL20(2)                                        ---------->DOF2 >YAB1 <-----------GT1 --------->ARR11(3)                               --------->At4g35610 <-------- ------>TOE2(3)     --------->AHL20(2)  <----------DOF2<<<<<<<<<TBF1    <---------At4g35610 <-------- >AHL20(2)      ------>ZmHOX2a(1)  <---------GLK1(2)<<<<<<<<<TBF1       <-------GAMYB   ---------->DOF2   ccttaatatatacaactccttataaaatctactaaaagattccttttttgtttcttcttcttcaccaattcttcagttgaagaaagagcttaaagatgta  18164200                                                               <---------LBD16                     <-                                                           <---------YAB1                --------->O2        <------ZmHOX2a(1)                                <---------RVE1(1)               <---------O2     --------->At4g35610         ---------->DOF2         <---------CCA1(1)               --------->ANAC46 <-----------HVH21           <---------ANAC58           --------->ARR11(3)          <---------ICU4 <- >ARR11(3)  >>>>>>>>>TBF1    <---------ANAC55(2)        --------->AHL20(1)      <-------TEIL       -- -------AtSPL8               <---------ANAC58           <---------ARR11(3)  --------->DAG2         <- -------AtSPL3               <---------ANAC46       ---------->DOF2        ---------->DOF2         <-   cagtatcagaggaagaagaagagattgagtttcgtgaaagttgtattttcgagtaaaagatattatcgggaatatagaaaagttcatcttcacgagacat  18164300                                                         --------->AHL20(1)                                                         <---------AHL20(1)                                                         --------->AHL20(2)           <---------ANAC58                             --------->AHL20(2)           <---------ANAC58                           --------->TOE2(3)           <---------ANAC46                        --------->YAB1      <-----------RAV1(1)                       --------->WOX13(1)                          <--------    <---------ANAC46                           --------->AHL20(2)                           --------- --------->ALFIN1                              <---------AHL20(2)                           <-------- --------ANAC58                               --------->AHL20(2)                         --------->YAB1 --------ANAC46          <---------ANAC58  <---------YAB1<---------AHL20(2)           ----------->GT1 ------->ANAC55(2)       <---------ANAC58 --------->AHL20(2)               --------->ARR11(3) --------ANAC55(2)       <---------ANAC46 <---------AHL20(2)               <---------ARR11(3) <------ --------ANAC58         <---------TOE2(3)--------->AHL20(2)               <---------CCA1(2) ---------   cgcgtgttgtgttgtttgtggaaattgacgtttgaagttcaaattaaaattaatcacattaaattagtccaaacatatatctcttgttctgtaataaatt  18164400  Previous    Next  AGI:  At5g44925.1    Description:  transposable element gene. copia-like retrotransposon family, has a 0. P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana) Range:  from: 18159501    to: 18163859    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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