Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      <---------ANAC46                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                   --------->ALFIN1                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                 <---------ANAC58                                 <---------ANAC58                                 --------->ANAC55(2)                                 <---------ANAC55(2)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                           <---------YAB1                         <---------ICU4                         <--------HAHB4                         <---------AHL20(2)             --------->CCA1(2)                         -------->ATHB1                 ===============================HOX2a_HOX2a                         -------->HAHB4                 <------ZmHOX2a(2)                         --------->ATHB51              <---------ARR14(2)                         --------->YAB1                --------->ARR14(2)                        <---------YAB1                 --------->AGP1                 --------->CCA1(2)                        --------->ICU4<---------ANAC46 --------->ARR11(3)       <------ZmHOX2a(1)      ---------->DOF2   <---------ATHB51              --------->At4g35610      ----------->GT1   <---------ANAC55(2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           ----------->GT1 --------->AHL20(1) ----->ARR11(3)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------ARR11(3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ----YAB1            --------->AHL20(2)               <---------At4g35610     <---------TOE2(3)  ---- ->YAB1              <---------AHL20(2)    ----------->GT1     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)-   atattaagtaaagacgcgagtgtttaattattaatacgtggtgtaatgtaaaattcagatccacagacaaggggttaaatgaggaaatatatgaaacaaa  18142500                                      <-------TEIL                  <---------------AGL15                 ----------------->AGL2                 <-----------------AGL1              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          <---------ICU4          --------->CCA1(2)      ---------->DOF2          --------->YAB1         --------->ARR11(3)     --------->AHL20(2)       --------->ICU4 <---------AHL20(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------AHL20(2)    ----------->HVH21        xxxxxxxxxxx     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->AHL20(2)  --------->At4g35610   xxxxxxxxxxxxxxxx ----->YAB1---------->DOF2      <---------AHL20(2)       <---------ATHB12       <---------TOE2(3)   - -------->MYB52(1)--------------->AGL15   --------->YAB1<---------RAP2.6(3) <-----------HVH21       <   tataacgaatagatatagcaccattactggcaaattaaagtccataaaaatgttcagccatcatgaactgacattttatgtcaaggattccaacaagatg  18142600                                                                                <-----------HVH21                                                                               --------->LBD16                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             ---------->DOF2                                     <---------ANAC58          --------->TOE1(3)                                      <---------ANAC46  <xxxxxxxxxxxxxxxxx          --------->YAB1                                         <---------ANAC58<---------ABI4(2)          --------->TOE2(3)                         --------->ICU4      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         --------->MYB46(3)                         <---------ANAC46    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <---------ATHB12                           <---------YAB1    <---------ANAC46        ------>MYB46(1)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        -------->P                            <-------MYC3       --------->ANAC55(2)        ------>MYB83                          ------->MYC3       <---------ANAC55(1) <---------ICU4                           xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------LBD16 xxxxxxxxxxxx>smallRNA(se3)        <---------HSFB2a(2)           <---------ANAC55(2)<------NtERF2  <- xx>smallRNA(si3)                  --------->HSFB2a(2)        <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------->ICU4--------->WOX13(1)   <---------HSFC1(1)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   -- ---------ATHB12 --------->YAB1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ----------->GT1     <xxxxxxxxxx   aaatcattccaaccataaatcaaaataagatgctattcgagaaaaccacatgtgatgtttagcaattgcgtgaggtaaaaccgggcaccgagagttgaac  18142700                                                                             --------->ANAC46                                                               <---------ALFIN1                                                              --------->ANAC58                                                              --------->ANAC46        ------>NtERF2               ------>ZmHOX2a(1)                              --------->ANAC58 <---------ALFIN1              <---------ANAC58                               ----------->RAV1(1)     --------->ANAC46              <---------ANAC58                              --------->ANAC46--------->ANAC46         <------ZmHOX2a(1)                            <---------ANAC58  <-----------GT1       <---------TOE2(2)                              <---------ANAC58<-----------HVH21 ----------->RAV1(1) xxxxxxsmallRNA(le3)                             <---------ICU4--------->AtMYB61     --------->ANAC58 --------ARR14(2)                               <---------ATHB12 <---------ALFIN1    --------->ANAC58 ------->ARR14(2)                          --------->ANAC58--------->ZAT18 --------->DEAR3(1)     --- xxxxxxsmallRNA(i)                         --------->ANAC58<---------ZAT18--------->ANAC46       ----   agttccacataggattccttatgccacttcgactattttctcagaacccaataagtgcttctgcaccacacatttcaccccccaactacgccacataaat  18142800                                                                  <---------AHL20(2)                                                               --------->YAB1                                                              <---------ATHB51                                                              <---------ATHB12                                                          ------------>CBF                     *TSS                                                         --------->LBD16                   ------->MYC2                                                   --------->ARR11(3)                      <-------MYC2                                                   <---------ARR11(3)                      <-------MYC3     <---------ARR11(3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               ------->MYC3     --------->ARR11(3)      ----------->TBP   --------->YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -------->GT1       <------------CBF  <------------CBF  --------->ANAC46   ------>ZmHOX2a(1)  <------ ----->ATHB12  ------------>CBF   <-------TEIL<xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)------>NtERF2  <------   gagtgaatatatacactaacaatattggactatatatacatattggctatcaacatctccgtcaataataaaacgtccttcggcctacttacacatgctt  18142900                                                       <---------MYB46(3)                                                     <---------At4g35610                                                   --------->ZAT18                                                   <---------DEAR3(1)                                                  --------->ALFIN1                                                <---------ANAC58                                                --------->ALFIN1                                                <------MYB83                                                <---------ANAC46                                                <---------ANAC58                                                <------MYB46(1)                                               <---------MYB46(3)                                               --------->MYB46(2)                                               <---------DEAR3(1)                                               --------->MYB111(2)                                               <---------AtMYB61                                               --------->MYB111(1)                                               --------->MYB55(2)                                              --------->ALFIN1                                           --------->LBD16                                          <---------ANAC46                                        ---                                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                          ----                            --------->GLK1(2)<---------MYB52(1)                                  ----                            --------->ARR14(2)<---------MYB55(1)                                 ----                            <---------ARR14(2)<--------P                                   <---------MYB52(2)  ----------->GT1     <-----------TGA1    <---------ANAC58                             <------NtERF2 ---ANAC58         <---------ARR14(2)     <---------ANAC58                   --------->ANAC58   <---- ---ANAC58         --------->ARR14(2)    <---------LBD16                     --------->ANAC58   <xxxx   gcaagggtagaaatgagacagtatcgtcagaatccagtactcatgcgggtgggtgggctgttcagaaaacaatttgacgacgcattggaggcaaataacc  18143000         <---------ARR11(3)         --------->ARR11(3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) --------->ANAC58               <---------MYB46(3) --------->ANAC58             <---------ANAC58 ------>LBD16                 <---------ANAC58                                              <-------- ----->ANAC46          ----------->ARR10                                                    --------- ----->ANAC58          <---------TOE2(3)            <---------ICU4                         <-------TEIL ----->ANAC58          <---------TOE1(3)     --------->ARR11(3)                      xxxxxxxxxxxxxxxx -----LBD16           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     ----------->GT1     <- xxxxxxxxxxxxsmallRNA(s)    <---------YAB1   <---------ARR11(3)           ---------->DOF2 <--------P   cggaagcacattatcttgaagggctaaggtatgcttgttgggagaaagatttagtcatggcaaaaaaacacatttttaaagctgtaaacaaggtagatga  18143100                                  <---------MYB46(3)                                          xxxxxxx                                 <---------AtMYB61                                          <xxxxxxxx      <---------MYB46(3)         <---------ANAC46                                          <------NtERF2     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                 <xxxxxxxxx    <---------MYB52(1)           --------->ALFIN1                                  <xxxxxxxxxxxxxxxxx  <----------DOF2             <---------AtMYB61  <------MYB46(1)                  xxxxxxxxxxxxxxxxxxx <------NtERF2                <-----------RAV1(1)<------MYB83      --------->MYB46(3)    xxxxxxxxxxxx -At4g35610                 <-----------RAV1(1)  ----------->GT1<---------ZAT14  ------>MYB46(1) >At4g35610     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           --------->ZAT14  -------->Pxxxxxxxxxx xxxxxxx>smallRNA(si3)  <---------------AGL15--------->ZAT2   --------->ANAC46   ------>MYB83 xxxxxxx --------DEAR3(1)<-----------RAV1(1)       <------ZmHOX2a(1)<-----------GT1     <---------ALFIN1   ggcgctgtttgttatggctatgttgtctatttgtggtggtgagaaggagctaggtgaatttttcactgaacaactgtttgccctaccttgggccgaagta  18143200                                                                                         <xxxxxxxxxxx                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    --------->PCF2              <----------DOF2                                                    <---------PCF5 xxxxxxxxxxxxxxx>smallRNA(si3)                           <---------At4g35610     ------>NtERF2 xxxxxxxxsmallRNA(i)    <---------At4g35610              --------->At4g35610     <---------TCP15(1) xxxxxxxxxxxxxxsmallRNA(fl3)                 --------->ANAC46                   <---------PCF2------- xxxxxxsmallRNA(se3)    --------->At4g35610  --------->ANAC58                   --------->TCP20 xxxx>smallRNA(fl3) <-----------GT1          --------->ANAC58                   --------->TCP15(1) xxxxxxxxxxx>smallRNA(si3)                  <---------ZAT18                  --------->ALFIN1 <------ xxxxxxxxxxxx>smallRNA(se3)                 --------->ZAT18                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(si3)            --------->ALFIN1           <---------AtLEC2   ------>ZmHOX2a(1)   ttagctatgggtgattctttattttcagctcttgaacgaatggctgtgcgccatggtacagcttacaagcttacatggaatggggcccatcctccatgtg  18143300                                                                                                  <--                                                                                                  ---                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                              -------                                                                                             --------                                                                                             <-------                                                                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                    <---------DEAR3(1)       <-------                                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                                  <---------RAP2.3(1)       ---------                                                                 <---------DREB2C(2)        ---------                                                                 <---------DEAR4(1)         ---------                <---------YAB1                                   <---------At1g77200       ------->TEIL                <---------AHL20(2)                               --------->ETT(1)         <---------ALFIN1               --------->AHL20(2)                                <---------RAP2.3(3)     --------->At4g35610     --------->ANAC46                                     --------->GLK1(1)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <<<<<<<<<GATA-3                                        <---------GLK1(1)   <---------------AtSPL8   <<<<<<<<<GATA-2                          <----------DOF2     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <<<<<<<<<GATA-1                   --------->REM1(1)   xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxx   <<<<<<<<<GATA-4                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->WOX13(1)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<------NtERF2      xxxxxxxxxxxxxxx xxxxxsmallRNA(i)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <-----------HVH21      --------->ZAT2< >MYC3  ----------->RAV1(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------DEAR3(1)   --------->At4g35610 -MYC3 --------->ANAC46 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <-----------RAV1(1)    --------->ANAC46   tatcaatccacaacatatataatagatgcgaagagtgctacattttcttttgttcaaaagaattctgtcggcgatgttagatggtacaagctgcacccaa  18143400  Previous    Next  AGI:  At5g44880.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14020.1) Range:  from: 18142895    to: 18143380    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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