Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                <------MYB83                                                                              <------MYB46(1)                                        --------->ANAC58                     <---------TOE2(3)                           <-----------GT1<------ZmHOX2a(1)          <---------ARR14(2)                         --------->HSFC1(2)                          --------->ARR14(2)                         <---------HSFB2a(1)                         --------->GLK1(2)                         --------->HSFB2a(1)               <---------MYB46(3)--------->MYB59       --------->MYB52(1)<---------HSFC1(2)  <---------MYB59   <---------WRKY12      ------>ZmHOX2a(2)       <-----------GT1 <---------GLK1(2)--------->ANAC58  <--------P ------->TEIL<-------TEIL      <-   gctgagaaataactgttccagcccagaattttccatcggagcaaggaccgaattgaactggttgttcaacgaatccgattaggttgatccagtttgaaat  18090000                                                                           <----------DOF2                                                                        <---------RVE1(1)                                                                       --------->ARR14(2)           -                                <---------GLK1(2)            --------->ABI4(2)                    <--                             ----------------------->TaNAC69(2)        <---------ARR14(2)         ---                          <------NtERF2                      --------->MYB55(2)                  ----    --------------->AtSPL8--------->ATERF1(1)                <---------MYB46(3)                 -----  <---------MYB52(1)    <---------ANAC46          --------->REM1(1)    <---------GLK1(2)   <--------- --------->LBD16       <---------LBD16     <-----------HVH21<---------AtMYB61             <---------ANAC58 --------LBD16     <----------DOF2        --------->ANAC46  --------->ALFIN1              <---------ANAC58   ttccggtttgtactcaattttctttggcggagtcgattctttctccgtcgctacatttagcggtggtttcacagatacttttgccagaggtttctttcct  18090100                               --------->GLK1(1)                           --------->ANAC55(2)                           --------->ANAC46                 --------->LBD16                                     <---------At4g35610                <---------ANAC46                                --------->At4g35610           <-----------RAV1(1)--------->ARR14(2)                <---------At4g35610     --------->At4g35610   --------->ANAC58                     <---------HSFB2a(1)     <---------At4g35610   --------->ANAC58                     --------->HSFB2a(1)  <---------At4g35610      <---------ANAC55(2)                  <---------ZAT2  --------->At4g35610      --------->ANAC55(1)                  --------->HSFC1(2) --------->DEAR3(1) <--------------OsCBT                        <---------HSFC1(2) -------->MYB46(3)<------NtERF2<---------GLK1(1)          --------->ALFIN1 -------ALFIN1  <---------ANAC58             <-----------GT1    --------->ZAT2              <-------- ------>AtMYB61 <---------ANAC58  --------->At4g35610   <---------ANAC58       <---------ANAC58 ----->MYB46(3)<---------LBD16<---------ARR14(2)        <---------ANAC58       <---------ANAC58 ->ZmHOX2a(1)--------->ALFIN1 <---------GLK1(2)         <---------ANAC46  <----------DOF2----------->TGA1 -DOF2 <---------YAB1     <---------LBD16 <---------GLK1(2)    ----------->ARR10     <---------ZAT14   ccaccgctgatgactgtggcggagaaaacacggatttgctgcgagattatccatttttgagtggggagcttcgctgcttttgagtggtatagtgacgaag  18090200                                                                                                <----                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                              <------                                                                                              <------                                                                                             <------NtERF2                                                                                             <-------                                                                                             --------                                                                                            <--------                                                                                         <-----------HVH21                                                                                        <-----------RAV1(1)                                                                                   <XXXXXXXXXXXXXXXXX                                                                                  --------->ZAT14                                                               --------->AHL20(2) <---------ZAT14                                                        <---------ARR14(2)     --------->LBD16-------                                                        --------->GLK1(2)    <---------LBD16------>NtERF2                                                        --------->ARR14(2)--------->GLK1(1)--------->ETT(2)  --------->ZAT14              --------->ATHB12        <---------GLK1(2)  <---------GLK1(1)<---------DEAR3(1)  <---------ZAT14             <-------TEIL         ---------->DOF2   <-----------GT1    --------->ALFIN1 -ANAC46                <------ZmHOX2a(2)    ---------->DOF2  <---------WOX13(1) ----------->HVH21   acactgctcttgtcaatgttcttgagatcaaattcattgtttcatactaaagagaaagaatctgatttattctacgatttccggtgaactgtgtcgccgg  18090300 --NtERF2 ----LBD16 --->LBD16 >NtERF2 ---LBD16 ---ANAC46 --LBD16                          --------->CCA1(2)             ---------->DOF2 ->ATERF1(1)               <---------HSFB2a(2)                <------NtERF2 -RAP2.3(1)             --------->GLK1(2)--------->DAG2    <---------ZAT18                <---------- XXXMIR2111B*          <---------GLK1(2)---------->DOF2    --------->ZAT18              <---------WOX13(1) -->DEAR3(1) <------ZmHOX2a(1) ----------->ARR10        *TSS ------>NtERF2  ----------->GT1   ggaattttagagggaggaaatgagagaatcgcgaagataagataaagccctaatttgtttgggcgccaaaggtttaaggggaaacaagtgattaacaggc  18090400                  <-------GAMYB                  <---------RAP2.6(3)                 <---------MYB46(3)          <------------CBF         <---------ICU4         --------->ATHB12         -------->HAHB4         --------->ATHB51         -------->ATHB1         <---------AHL20(2)        <---------YAB1        <---------ATHB51        --------->ICU4                               ------>ZmHOX2a(1)      <---------ICU4                                --------->TOE1(3)                              <-      --------->YAB1                                --------->TOE2(3)                              --      <--------ATHB1                              <---------YAB1                             --------      --------->ATHB51                   ----------->TGA1                               <-------TEIL      -------->HAHB4                     ----------->HVH21<---------ICU4               --------->ARR14(1)      <--------HAHB4                   --------->At4g35610-------->HAHB4               --------->CCA1(2)     --------->ICU4                   --------->GLK1(2)   <---------AHL20(2)          <---------ARR14(2)     <---------ATHB51                 --------->ARR14(2) --------->ICU4               --------->ARR14(2)     <---------YAB1<---------MYB52(1) <---------ARR14(2) <---------YAB1           ---------->DOF2 <--   --------->YAB1----------->GT1     <---------GLK1(2)   <---------ATHB51       --------->TOE2(3) <--  --------->AHL20(2)       ---------->DOF2 <---------TOE2(3)                    --------->TOE1(3) --- -GT1--------->AHL20(2)  <---------HSFB2a(2)<---------ANAC46          --------->ANAC46--------->ARR11(1)   ccaaataataattattgggccgttattccaaaaggcctagaatctgacgtttatccttaattattcacttatacacagttaacctaaagatacgaccaca  18090500   <---------AHL20(2) -------ATHB1                                                              <-----------GT1 ------->YAB1                                                              <---------At5g28300 ->AtMYB61                                                        --------->AHL20(2)    --------->ANAC55(2) -------YAB1                                                      <---------AHL20(1)    ----------->GT1 -------ATHB12                                                    <---------AHL20(2)    <---------ANAC55(2) ------>ICU4----------->TGA1                              <---------ANAC46<-----------GT1    --------   atgattttttttttatgacgaaattttagttgattttgtagtatatcaaacttagccgagacttgtattttattttttaccctcataaacatgtaatttt  18090600                                                                                       <---------AHL20(2)                                                                                       --------->AHL20(2)                                                                                      <---------AHL20(2)                                                                                      --------->AHL20(2)                                                                                     <---------YAB1                                                                                   <---------AHL20(2)                                                                                   -------->ATHB1                         <---------AHL20(1)                                        -------->HAHB4                         --------->AHL20(1)                                        <---------ICU4                         --------->AHL20(2)                                        --------->ATHB51                         <---------AHL20(2)                                        <--------HAHB4                        --------->YAB1                                             --------->YAB1           --------->ANAC58       <----------DOF2                                 <---------ATHB51           --------->ANAC58--------->YAB1                                         <---------ATHB12    ---------->DOF2    <---------YAB1                                             --------->ICU4 ->ICU4  --------->CCA1(2)<---------YAB1     ----------->GT1                      <---------YAB1   gaactaaaaagataagccaattgatattataatatgctttttatgaaatgtgaaatacctataactgcaattgatgcaactctaattattaaattcaatt  18090700                                                                                                   <-                                                                                                   <-                        --------->GLK1(2)                                                          --                       --------->ARR11(3)                                                         ---                       <---------ARR11(3)                                                         <--                  --------->SPL7                                                        <---------MYB52(1)                ----------->HVH21                    <---------DAG2     <---------AHL20(2)        ---            --------->ZAT2               --------->AHL20(1)            <---------AHL20(1)   <<<<<<<<<            <---------ZAT2           <---------AHL20(2)                --------->AHL20(2)   <<<<<<<<<            <---------At4g35610      <---------AHL20(1)                <---------AHL20(2)   <<<<<<<<<            --------->At4g35610      --------->AHL20(2)            <---------AHL20(2)  <---------At4g35610       <---------ZAT2  <---------GLK1(2) <---------AHL20(2)    --------->YAB1  <-----------GT1   ----       <---------At4g35610           --------->AHL20(1)  <-----------GT1--------->AHL20(2)-----------       --------->ZAT2----------->ARR10   --------->AHL20(2)   <-------TEIL  <---------ICU4<------MYB46(1)       --------->At4g35610        --------->YAB1     <----------DOF2   --------->AHL20(1) <------MYB83       ----------->RAV1(2)     <----------DOF2    <-----------GT1 --------->AHL20(2)   <-------GAMYB   tccacattcagctgagctcggacgagattttgactttaataaattttttgtttcactttttacattcataaaatttaattttcacattcagttggtcaaa  18090800      --------------->AGL15   <-----------GT1        <---------YAB1 --------YAB1           --------->YAB1 --------AHL20(2)  <<<<<<<<<<WRKY38 ------->AHL20(2)  <<<<<<<<<<WRKY43 ------>AHL20(1)   <<<<<<<<<<WRKY26 -------AHL20(1) ----------->GT1 ------>AHL20(2) <------MYB83                              --------->AHL20(2) <WRKY43         <------MYB46(1)                           <---------AHL20(2) <WRKY38       <---------MYB52(1)                       <---------ICU4 <WRKY26      <---------At4g35610 <---------AHL20(2) --------->YAB1                      --------->AHL20(2) ----->YAB1   <-------GAMYB   --------->AHL20(2)    <-------TEIL                        <---------ATHB12 >GT1----------------->AGL3  <---------YAB1    <-----------GT1                        --------->WOX13(1)   tataatttccacattcagttggtcaaatatgattatttagttttagtttttacattcataattttttaaaattttgaaccaaaaatatcaatcaaataat  18090900  Previous    Next  AGI:  At5g44785.1    Description:  OSB3; single-stranded DNA binding. similar to OSB2/PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE9), single-stranded DNA binding [Arabidopsis thaliana] (TAIR:AT4G20010.1); similar to OSB2/PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE9), single-stranded DNA binding [Arabidopsis thaliana] (TAIR:AT4G20010.2); similar to mitochondrial SBP40 [Solanum tuberosum] (GB:AAX34397.1); contains InterPro domain Primosome PriB/single-strand DNA-binding; (InterPro:IPR000424); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR016027) Range:  from: 18087908    to: 18090356    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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