Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       <---------ARR14(2)                                       --------->ICU4                     --------->ARR14(2)                                     <--------ATHB1                    --------->GLK1(1)                                       --------->YAB1                    --------->CCA1(2)                                       <---------AHL20(2)                    <---------GLK1(1)                                       --------->AHL20(2)                   <-----------ARR10                      <---------AHL20(2)<---------AHL20(1)                   --------->ARR11(3)             --------->ICU4            <---------ICU4                   <---------ARR14(2)             <---------YAB1           <---------YAB1               <---------At4g35610--------->AHL20(2)     <---------AHL20(2)--------->ICU4         --------->MYB52(1)<----------DOF2 <---------ANAC46       <-----------GT1 ---------AHL20(2) --------->ARR14(2)      <---------ANAC58   <---------AHL20(2) -------->AHL20(2) <---------ARR11(3)      <---------ANAC58   --------->AHL20(2) --------->AHL20(2) -----AHL20(2) --------->At4g35610<---------AHL20(2) <---------YAB1      --------->YAB1   aattaaactgaaaacggagcagatatccgcttttaaaaaattgtagtgtgtgattattttttatttttttacgaataataatttttaatatttgttttgc  17962800                      <----------DOF2              <-----------GT1             --------->GLK1(1)         <---------ANAC55(2)                                   --------->AHL20(2)    --------->TOE2(3)       --------->AHL20(2)      --------->YAB1         ---------->DOF2         ---------->ID1   atcatagaattacatatatccagacttttaaaatcaaaatgaaacagataacaaattgaagcgaatttaacagataatttgtctcatccctaatgtaatc  17962900                           --------->ARR11(3)                           <---------ARR11(3)          -------->P     <------MYB46(1)                        --------->YAB1     --------->AHL20(2)        <---------TOE1(2)              -                  --------->ANAC46  ----------->GT1   --------->MYB52(1) <-------TEIL               -                <-----------GT1  <---------At4g35610<---------MYB52(2)<------MYB83                  <   tacatttccatcttctatttacacaatgagattttagatgataaaaaaaataaaactaaccagagtttttgtaggttcatacaatatacaaaaacaaaaa  17963000               <---------YAB1              --------->AHL20(2)              <---------AHL20(2)             --------->YAB1             --------->AHL20(2)                                                               ------- -------->ARR14(2)                                                    ---------->DOF2         <------ -------->GLK1(2)                                         <---------TOE2(3)               --------->ARR11(3) ---------ARR14(2)   <---------TOE2(3)  <-----------RAV1(1)     ----------->GT1       <------ZmHOX2a(1)   caaatctgaaaacaattaaaattaagaaataggtttttttttttgttggacacaaaaattaagaaatggataaaaagaaggaatattaggaagatgtgga  17963100                                              <------------CBF                                             --------->ATHB51                                             --------->ATHB12                                             -------->HAHB4                                             <---------ICU4                                             <---------AHL20(2)                                             -------->ATHB1                                            --------->ICU4                                         --------->AHL20(2)                                         <---------AHL20(2)     --------->RAP2.6(3)     <---------------AGL15    --------->MYB52(1)       <----------DOF2<---------ATHB51   ----------->HVH21         --------------->AGL15 --------->HSFB2a(2)        <-----------------AGL3               ----------->HVH21 <---------HSFB2a(2)        <-----------------AGL2          --------->ANAC58        *TSS           -- -->ZAT18                 <---------MYB52(1)<---------YAB1  --------->ANAC58        --------->ANAC46 ---ZAT18        ---------->DOF2         <---------YAB1<---------TOE2(3)    --------->ZAT6       ----   cttctgtaacggctagttccaaagtaccgttctttttttggttttaattattgtattaaggcacgctctgacacattcacactcacacatagcgagaaga  17963200                                                                   --------->ZAT6                                                         <---------ANAC58                                                         <---------ANAC58                               --------->ANAC46        <-----------GT1                         <---------ANAC58       <---------TOE2(3)  <-----------GT1 --------->GT1           <---------ANAC58       <---------TOE1(3)<-----------GT1 ------>DOF2        <----------DOF2         <----------DOF2    <----------DOF2   aaagaaaaaaaaaaactcaaaacttttgcttctactcaattctctgatttagggttttttcttgactttacactatctcgatttgagaagtgagaagaga  17963300                                                                                           --------->LBD16                                                         <----------DOF2                 <---------LBD16                                     ----------->GT1     <---------DAG2            xxxxxxxxxxxxxxxx>smallRNA(i)                                  ---------->DOF2--------->TOE1(3)              --------->GLK1(2)        ------->TEIL       --------->AtMYB61    ----------->GT1                <---------ARR11(3)     --------->AtLEC2      <---------ALFIN1  ---------->DOF2                   --------->ARR11(3)   aatcgccatgaacattttcaagaagaagaccactcccaaaggtataaaaaagcttaaaactttatcacattgtttctctgagattttgttttctggggtt  17963400                                                 <------MYB83                                                 ----------->GT1                                                 <------MYB46(1)                                                 <---------ANAC58                                                 <---------ANAC58                                                <---------MYB46(3)                                                --------->MYB59                                               <---------ANAC46                                            <-----------RAV1(1)                                         <---------ARR11(3)                                         --------->ARR11(3)                                    --------->AHL20(2)                <----------DOF2            <---------LBD16 <------ZmHOX2a(1) <---------MYB52(1)    --------->At4g35610  <-----------GT1       <---------ANAC46--------->RVE1(1) ---------->DOF2        <----------DOF2  ---   tttttttcttcatctctggagaaatcgcgaggattagttttaatatctgttgggtaacaaaaaagatgggagctttaagtgttctttgtgttcaaaattg  17963500                                                                       ------>ZmHOX2a(1)  <---------TOE2(3)                                                                      --------------->AGL15                                                                      --------->TOE1(3)  ---------->DOF2                                                                      <---------------AGL15                                                         <---------STY1(2)        ----------->GT1                                                 ---------->DOF2      --------->TOE2(3) --------->AHL20(2)       <---------ANAC58                         <---------AHL20(2)   ----------------->AGL3       <---------ANAC46                     ==========================================MADS_MADS       <---------ANAC58     <---------LBD16 --------------->AGL15    ----------------->AGL2 ---->TEIL       <---------ZAT6             <---------------AGL15 <---------GLK1(2)     <---------AHL20(2)   aatcttgtagtgtgtgttagtgtgaatttttctgggttcttagtttctattaaaaggctagatagatagattccttaattagatgtgtaattaaagtatg  17963600                                 --------->ARR14(2)                                 <---------ARR14(2)                                          <-------            ----------->GT1  ----------------->AGL2   <-----------GT1                   <---------YAB1    --------->ZAT18----------->GT1           ----------->GT1                          ----------->GT1  --------->At4g35610   <---------At4g35610<---------ANAC58                       --------->DAG2  <---------At4g35610   --------->At4g35610<---------ANAC58                      ---------->DOF2   <-   tggaagctcacaattggaaaatagtaagttgcccagatttagataacttgtgaattttgcaattttgcatttgattctattgaaaaagttgtgatttttt  17963700  Previous    Next  AGI:  At5g44560.1    Description:  VPS2.2. similar to VPS2.3 [Arabidopsis thaliana] (TAIR:AT1G03950.1); similar to Os03g0639800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050739.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN62571.1); contains InterPro domain Snf7; (InterPro:IPR005024) Range:  from: 17963184    to: 17965627    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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