Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                   <-                                                                                                   <-                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                                                                 <---                                                                                             <------MYB46(1)                                                                                             <-------                                                                                            <-------- <---------DAG2                                                                     ================= <----------DOF2                                                            --------->TOE2(3)<------MYB83 ---------GT1                             --------->ICU4                    --------->YAB1 <--------P ----AHL20(2)                             <---------AHL20(2)              <---------YAB1 --------->ALFIN1 ----ICU4                                 --------->AHL20(2)         ----------->GT1------>ZmHOX2a(1) -->AHL20(2)                              <---------ATHB51    <---------ATHB12 <-----------GT1 <----- -->ICU4          <------ZmHOX2a(1)  ------->GAMYB            --------->AHL20(2)    =================   ttactttactatcgatgagaggagatgatatatgtataaccgaaataattcagagtttaatccaataaatccagttaatattaatccttcggtgttggta  17944300 <----------DOF2 ----->ZmHOX2a(2) --------RVE1(1) -----ZmHOX2a(2) ------>ARR14(2) -------ARR11(3) -------ARR14(2) -------AGP1 ------>ARR11(3) ------CCA1(2)           <---------AHL20(2)                                                <-------TEIL --MYB46(3)   ---------->ID1                                                            --------->GLK1(1) -AtMYB61    <-----------GT1                                                       <---------LBD16 =====HOX2a_HOX2a <----------DOF2                                               --------->ARR11(3) ---P   --------->MYB52(2)                               ---------->DOF2        <---------ARR11(3)  < ======HOX2a_HOX2a<---------DAG2                     ------->TEIL      --------------->AtSPL8      --   gatcttttgttcgtttctccctttttttttattctacagcaaaaatggtctcttgaatctaaagacaatactctatgtacaatatctcggagattcaacg  17944400                                  ---------->ID1                                 <-----------GT1                              <---------AHL20(2)                              <---------ICU4                              --------->AHL20(2)                           <--------ATHB1                           <---------ICU4                           --------->AHL20(2)                           <---------AHL20(2)                <---------TOE2(3)                           <---------AHL20(1)               ---------->DOF2         --------->AHL20(1)                          --------->ICU4                  <---------YAB1            <---------AHL20(1)                          <---------YAB1                 --------->TOE2(3)          --------->AHL20(2)                        --------->YAB1                  --------->ATHB12            <---------AHL20(2)                        <---------ICU4                  --------->YAB1           --------->YAB1            ---------->DOF2--------->YAB1               <---------ICU4          --------->ICU4     ---------->DOF2   <---------YAB1                  <---------ATHB12         <---------YAB1 ---------AHL20(2)     --------->ICU4                  --------->ICU4         --------->YAB1      --- ------->AHL20(2)    --------->YAB1             ---------->DOF2          <---------ATHB12<-----------GT1   atttaataaaagtttaaagagaataataataattttttcgctcttagacaaaaagaaatcattaaagttttttcaatgaataataataaatttacaaaac  17944500            <---------AHL20(2)           <---------AHL20(1)           --------->AHL20(1)           <---------AHL20(2)           --------->AHL20(2)          <---------AHL20(2)          --------->AHL20(2)       --------->AHL20(2)      --------->AHL20(2)      <---------AHL20(2)                                           <---------MYB59  --------------->AGL15               ---------->DOF2      <---------ANAC55(2)  <---------------AGL15   ----------->GT1            <---------TOE2(2)>>>>>>>>>MYB98               -- ------>ZAT14           ----------->GT1 --------->DAG2     <---------ANAC46                <---------   tatactatataaattaatttgacaaatggtgaaaaaaaaaaaaaggcaatacacctatgttatgtatagcctaacccattctaactaggcccaaattgaa  17944600                                    --------->HSFC1(1)                                    <---------HSFB2a(2)                        --------->WOX13(1)                                  <---------At4g35610      ----------->RAV1(1)           --------->HSFB2a(2)             --------->LBD16 -------->DOF2       <-----------HVH21                       <---------ALFIN1   *TSS ---CBF         ---------->DOF2 <----------DOF2----------->GT1      ------------>CBF   acaaagcccaacaagaaggaaagtgtcattcattctttctcgaataaaaccgtagaaattccccctcttccccaattccactgccaaaactcttcgctta  17944700                     ------>NtERF2                    --------->DEAR3(1)                    --------->ATERF1(2)                    <---------ATERF1(2)                   <------NtERF2                   <---------LBD16                  <---------ATERF1(1)              --------->ANAC46         --------->ARR14(2)         <---------ARR14(2)                                 <---------At4g35610       --------->MYB46(3)      <---------ANAC46<------NtERF2                 <---------ARR11(3)              <-----------GT1    ------>NtERF2 <---------RAP2.3(1)       --------->GLK1(1)                  <---------ANAC46    --------->LBD16--------->RAP2.3(1)      --------->At4g35610                <---------ANAC58   --------->ANAC46--------->ATERF1(1)     <---------ARR11(3)                  <---------ANAC58   <---------DEAR3(1)--------->LBD16       --------->ARR11(3)              <------ZmHOX2a(1)    -----  <---------LBD16<---------DEAR3(1)  <---------------------WRI1        --------->MYB52(1)       -----   attctccggcgtatacaagtcgccggcaaaaatgtcgatgtcgaagagctccaagatgcttcagttcataaactacaggatgcgagtaacaatccaagac  17944800                                      --------->O2                                    <---------ALFIN1                                    ----------->RAV1(1)                                      --------                                 --------->ANAC58                                           ---------                                 --------->ANAC58                                       ----------->HVH21                          <---------SPL7                         ----------->ARR10     <-------------                         <---------ANAC58                 --------->ATERF1(1)         --------->LBD16     --------->At4g35610 <---------ANAC58                <---------ATERF1(1)          ------>NtERF2     <---------At4g35610 <---------ANAC46                ------>NtERF2               <---------DEAR3(1) ---->ANAC58       <-------TEIL  ------>ZmHOX2a(2)      <---------RAP2.6(2)         <---------LBD16-- ---->ANAC58----------->GT1 --------->SPL7 ------->TEIL --------->ETT(2)           ------>ZmHOX2a(1)   ggaagacagctaatcggaaaattcatggcgttcgatcgccacatgaatcttgttcttggcgactgcgaagagtttcgaaaacttcctccggcgaaaggta  17944900                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                -----                                                                                                <----                                                                                              -------                                                                                              ------>NtERF2                                                                                              <------                                                                                              <------                                                                                             --------                                                                                             --------                                                                                             --------                                           <------MYB83                                      --------                                           <------MYB46(1)                                   --------                                          <---------AtMYB61                                  --------                                          --------->MYB59                                    --------                                      <------MYB83                                           ------->GAMYB                                      <------MYB46(1)                                       ---------                                 --------->ANAC58                                          <---------ATERF1(1)                                 --------->ANAC58                                         <---------ALFIN1   <----------ID1               <---------TOE1(2)                                        <-------TEIL --->GT1                        --------->SPL7                                           --------->ETT(2) >DAG2  --------->MYB52(1)      <---------ZAT18                                          <---------WRKY12 --------WRI1                <---------ANAC46                   ----------->GT1      <---------TOE1(2) ------->YAB1  ---------->DOF2<---------SPL7             <------ZmHOX2a(1)      <-----------HVH21----   ataagaagacgaacgaagaaagagaagagcgtcgtacgcttggtttggttttacttagaggagaagaagtgatttcgatgactgtcgaaggtccaccgcc  17945000                                                   <---------ARR14(2)                                                 --------->LBD16                                                --------->ANAC58                                                --------->ANAC55(2)                                                --------->ANAC58      --------->GLK1(2)                         <---------ANAC55(2)     <---------GLK1(2)                          --------->LBD16 -------At4g35610                              <---------LBD16 ------>At4g35610                 --------->At4g35610 -------->RAV1(2)       <---------ARR11(3)     <-----------------AGL1 -------ZAT2            --------->ARR14(2)   --------->PCF5                       -------->P ------>O2              <---------ARR14(2) <------MYB83                           --------->MYB52(1) ---->DEAR3(1)          <---------AGP1    <---------MYB46(3)                      ------>MYB83 -----ALFIN1      <---------ARR14(2)     <---------ANAC46       --------->ZAT2    ------>MYB46(1) -->ABI4(1)       --------->GLK1(2)      <---------ANAC58       <---------ZAT2   --------->MYB55(1) -----HVH21       --------->ARR14(2)     <---------ANAC58       <---------At4g35610 ---ATERF1(1) ----------------->AGL3   <---------MYB46(3)       --------->At4g35610 ->ANAC58     <-----------------AGL3  --------->ALFIN1       <---------At4g35610<---------MYB111(1) ->DEAR4(1)   ----------------->AGL2<-----------RAV1(1)   <---------ANAC58      <---------MYB59 ->RAP2.6(2)  <------NtERF2     --------->MYB46(3) <---------GLK1(2)            <---------MYB46(2) ->DREB2C(2)  >>>>>>>>>E2Fc     <------------AtMYB77--------->GLK1(2)      <---------ANAC58 ->ANAC46     >>>>>>>>>E2Fd    <---------At5g28300 --------->ARR14(2)   --------->ALFIN1 ->DEAR3(1)  ------>NtERF2------>ZmHOX2a(2)<------MYB46(1)<---------ANAC58 <---------ANAC58 ->ANAC58   --------->ANAC58  --------->ARR14(2)<---------HSFB2a(2)    ------->PIF5 >MYB46(3)  --------->ANAC46  <---------ARR14(2)--------->HSFB2a(2)    <-------PIF5          <------- -->NtERF2  --------->ANAC58 ----------->HVH21 ----------------->AGL1 <---------ANAC46     <---------MYB52(1)   acctgaagaatctcgcgccaaatctggatctgtaaccgctgtggctggtcccggaatcggtcgtgctgctggacgtggagtacctactggtccattggtt  17945100                                                                                  <---------ALFIN1                                                                                  ----------->RAV1(1)                                                                                  --------->AtMYB61                                                                          --------->HSFB2a(2)                                                                       ------>ZmHOX2a(2)                                                                       ==============================                                                  ============================HOX2a_HOX2a                                                  <---------HSFB2a(2) <------ZmHOX2a(2)                                                  ===========================HOX2a_HOX2a                                                  --------->HSFB2a(2) ===============================                                         <---------ARR14(2)           --------->GLK1(1)             -                                         --------->ARR14(2)          <---------ARR14(2)             <                                         ------->TEIL                <---------ARR11(3)            <-                                   <---------AtMYB61   --------->ICU4--------->ARR14(2)           ---                            <---------LBD16       ------>ZmHOX2a(1)  --------->AGP1       --------->KAN4(2)                           <---------ANAC58       --------->LBD16    <---------AGP1      --------->KAN4(1)                           <---------ANAC58      <---------LBD16     --------->ARR11(3)  <---------KAN4(1)   ---------->CDC5         <---------ANAC46     ----------->RAV1(2) <---------CCA1(2)  <---------GLK1(2) --MYB46(3)            ------>ZmHOX2a(1)<---------TCP16(2)    ------>NtERF2    --------->AtMYB61 <---   caagctcagcctggtttatctggtcctgttcgtggaattggtggacctgctcctggaatgatgcagcctcagatctctagaccaccacagattattcgtc  17945200  Previous    Next  AGI:  At5g44500.1    Description:  small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative. similar to SMB [Arabidopsis thaliana] (TAIR:AT4G20440.1); similar to SMB [Arabidopsis thaliana] (TAIR:AT4G20440.2); similar to SMB [Arabidopsis thaliana] (TAIR:AT4G20440.3); similar to unknown [Populus trichocarpa] (GB:ABK93409.1); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649); contains InterPro domain Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920); contains InterPro domain Small nu Range:  from: 17944680    to: 17946690    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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