Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                ----------->GT1             <---------YAB1          <---------YAB1    <---------AHL20(2)    --------->AHL20(2)  <---------YAB1 ---------AHL20(2)                    --------->TOE2(3) -------->AHL20(2)         ----------->GT1 --------AHL20(2)         ------->GAMYB       ----------->GT1    ----------->GT1 ------->AHL20(2)      --------->MYB52(1)--------->AHL20(2)     --------->DAG2 --------AHL20(1)     --------->MYB46(3) ---------->DOF2       ---------->DOF2 ---->AHL20(2)--------->YAB1         <---------ICU4     ------->TEIL                          <------ -->AtSPL8<---------AHL20(2)     --------->AHL20(2)    <---------AtLEC2        ----------->HVH21 ----   aattatttttatattattgtaacaacaacgggaaaataaacattaaaacagaaatatgcatgtcataaagttactcatagagtgacagagacttatttta  17924400                                                                    --------->ZAT18                                                            <-------TEIL                                                           --------->CCA1(2)                                                          --------->ARR14(2)                                                          <---------ARR14(2)                                                     --------->MYB52(1) <---------ANAC46                                                    ----------->HVH21 <---------ZAT2                                  <--------P      --------->ANAC58  <---------ZAT14                            --------->ATHB12      <---------ANAC55(2) --------->ZAT2              ---                           <---------YAB1         --------->ANAC58 <---------ANAC58           ------>ZmHOX2a(2)                          <---------GLK1(2)       --------->bZIP60(1) <---------At4g35610     =======                      ---------->DOF2             --------->ANAC55(2) --------->At4g35610   <--------        --------->ANAC46<---------ATHB12          <---------bZIP60(1)--------->ALFIN1   <---------AtLEC2 ---AHL20(2)        --------->ANAC58        --------->TOE2(2)      <---------ANAC58     <---------ANAC58 ------->GT1        --------->ANAC58        --------->TOE1(2)      <---------ANAC46     <---------ANAC58   tgtaaaatacacacgatttagcaccaaagattattggtagatttaacatgggacgtaacagatacacttgtgtgctgggaagacatagttgcatgatcca  17924500                                 <---------ANAC58                                 <---------AtLEC2                                 <---------ANAC58                        --------->ICU4                                           --------->HSFB2a(2)                    --------->ZAT18                                     <---------TGA1a                    <---------ZAT18                        ----------->HVH21 <---------ANAC58            <---------TOE2(3)<---------ANAC58    --------->ANAC46       <---------O2        ------>ZmHOX2a(1)  <---------YAB1       <---------LBD16         --------->O2   ---------->ID1   <---------ZAT14 >>>>>>>>>>FUS3       ----------->RAV1(2) <---------ANAC58 ------>ATHB12      --------->ZAT14 >>>>>>>>>>ABI3--------->LBD16       --------->TGA1a ==============HOX2a_HOX2a<---------GLK1(2)   <---------ARR14(2)      <---------ALFIN1 -ARR11(3)  <---------TOE1(3)<---------ANAC58 --------->ARR14(2)   --------->PCF2<---------HSFB2a(2)   tgtttggctccttcaaggttaatgcactgattcttgcatgcattactgtttccgcaaacccctgaccatgtcccacttggcttctcgcacaacttctgtg  17924600               <---------ANAC46               <---------ANAC58               <---------ANAC58              --------->ABI4(2)              <-------TEIL             --------->ALFIN1                       <---------ICU4            <-------PIF5                            --------->YAB1            <---------MYB52(1)                     --------->ICU4            ------->PIF5                           <---------YAB1           <---------DEAR3(2)                    <--------HAHB4          <---------DEAR3(1)                     <---------ICU4          --------->ATERF1(2)                    --------->YAB1          <---------DREB2C(2)                   --------->AHL20(2)                                  <          <---------ATERF1(2)                   --------->ICU4                              ---------         <---------ANAC46                --------->WRKY18(1)                --------->AHL20(2)     --         <---------LBD16               --------->WOX13(1)                   <---------AHL20(2)     <-    --------->AtMYB61             <-------TEIL--------->YAB1--------->AHL20(2)      --------->GLK1(1)   cttccaccattgccggtgcgtctgcatatatatgcatacatcagtcaagaataattatcaaataaactaaaattacatttaaacacatttccaataagaa  17924700                                                                                     <---------YAB1                                                                                   <-----------GT1                                                                                  <---------YAB1                                                                                <---------ICU4                                                    <---------YAB1             <---------YAB1                                                    --------->ICU4             --------->ICU4   <-----------GT1                           --------->DAG2                  <---------ICU4  <---------YAB1                            --------->MYB52(1)            <---------ICU4 ---------ICU4           <----------ID1    --------->CCA1(2)              --------->YAB1 >YAB1      ---------->DOF2               --------->ARR11(3)             --------->ICU4 ------->ICU4       ---------->DOF2 --------->At4g35610    --------->ANAC58 --------->ICU4 --------YAB1     --------->At4g35610   ----------->ARR10  --------->ANAC58 <---------YAB1   cattattactcaccgaaagcagcaaagagaacaagagcagcgaagataagggtgatgatggaagcaaacttagccatgatgattattactattttgtttt  17924800                               <----------ID1                               --------->ANAC58                               --------->ANAC46                         *TSS  --------->ANAC58        --------->YAB1                   <---------ANAC58                   <---------YAB1                   <---------ANAC46                 --------->YAB1                   <---------ANAC58     <------ZmHOX2a(2)              <-------GAMYB                 <---------ANAC46      <---------ARR11(3)             <------MYB83           ------->TEIL ----------->GT1--------->ARR11(3)             <------MYB46(1)          ------ <<<<<<<<<EIN3<-----------RAV1(1)  ---------->DOF2<-----------TBP     ----------->GT1      ----------   caatgtatagatgtatgtgttgtgtgaagaaataagccaaagatcaacgtctatttataatgaaatggtagtgggttaatcttctacttgtgcatcgtac  17924900                                                                     <---------DAG2                                                                     <----------DOF2                                                                    <---------ANAC58                                                                ------>ZmHOX2a(2)                                                               <------ZmHOX2a(2)                                                              <---------AGP1                       <-                                                              <-----------ARR10                    --                                                              --------->ARR14(3)                  ---               <---------ALFIN1                               --------->AGP1  <-------GAMYB      ----             <---------ALFIN1                                 <---------ARR14(2)        <------MYB46(1)  <---------bZIP60(2)                                         --------->ARR14(2)        <------MYB83  <---------ANAC58                                            <---------ARR11(3)      <---------ANAC46  <---------ANAC46                      --------->LBD16       --------->ARR11(3)      <---------ANAC58  <---------ANAC58  --------->AHL20(2) --------->ANAC46       <---------ARR14(3)      <---------ANAC58 <-----------------------TaNAC69(2)   --------->HSFB2a(2)   ----------->ARR10--------->MYB52(2) ----- ------>CBF------->GAMYB              <---------HSFB2a(2) --------->CCA1(2)  <---------MYB46(3) <---- ----->AtSPL8----------->RAV1(1) --------->At4g35610 ---------->DOF2<---------ANAC58<---------MYB46(3)   aataacgtggtaaccccacacattaaacagacatcatcttcccgtagccaatatcaaaagataagatcttgctttttgtttgttgatggctggtttctcc  17925000                                                                                     <------MYB83                                                                                     <------MYB46(1)                                                                                     ----------->GT1                                                                                     <---------MYB46(3)                                                                                   <---------ANAC46                                                                                  --------->ATERF1(1)                                                                                  <---------At4g35610                                                                                  --------->At4g35610                                                                                  <---------ZAT2                                                                                  <------NtERF2                                                                                 <---------DEAR3(2)                                          <---------ZAT2                         <---------ATERF1(1)                                          --------->At4g35610                    <---------MYB46(3)                                    <---------At4g35610                          ------>NtERF2                                  ---------->CDC5                                <---------RAP2.3(1)                                --------->TOE1(3)                               <---------RAP2.3(2) --------ALFIN1         ---------->DOF2   <---------At4g35610                   <---------RAP2.3(3) --------->RAV1(1)    >>>>>>>>>RAP2.2<---------RAP2.6(2)                        <---------RAP2.6(2) ------>ANAC46      --------->ARR11(3) --------->At4g35610                      <---------ATERF1(2) ------->RAV1(1)    <---------ARR11(3) <---------At4g35610            <-----------HVH21 ---->ANAC46    --------->ETT(2)--------->TOE2(3)      <---------At4g35610      <---------DEAR3(1) -----ALFIN1    <---------ETT(2)--------->TOE2(2) <----------DOF2--------->REM1(1)<-------GAMYB<-----   accacatatatttctctgtcgatatctaaagtaacctaagcggctgcttcggcttttagctaatgctacatcgttcacatgggcggctggttaatctgaa  17925100                               --------->ANAC58                               ------>MYB46(1)                       --------->TOE2(3)                     --------->AHL20(1)                     <---------ARR11(3)                     <---------AHL20(1)                     <-----------ARR10                                        <------ZmHOX2a(1)                     --------->ARR11(3)                                  <-------GAMYB                    --------->CCA1(1)                            --------->GLK1(2)   --------->ZAT14                    --------->RVE1(1)                           --------->ARR14(2)   --------->ZAT18                  --------->AHL20(2)                     <-----------HVH21<---------MYB52(1)  -------                  --------->YAB1                        --------->bZIP60(1)  <----------ID1   <------                --------->AHL20(2)                      <---------bZIP60(1) --------->MYB59   <------             --------->AHL20(2)--------->ANAC46  --------->ARR11(3)     <---------MYB46(3)  <--------           --------->ANAC58    ------>MYB83      --------->AHL20(1)   <---------LBD16<---------ZAT18 ----AtLEC2--------->ANAC58    --------->ANAC58 --------->YAB1  <---------GLK1(2)    <---------ZAT14   tggattaagactcaagaaaataatatcttaaccaagccatagttacacaagtatattgatgtcagagattctcgcggttaggacaagtgcagactgtgca  17925200                                                                                                    <                                                                                --------->ZAT18     <                                                      <------ZmHOX2a(2)         <---------ZAT18    <-                                                     <-----------ARR10     <-------GAMYB          <-- -->ZAT14                                            --------->ARR11(3)   ------>ZmHOX2a(2)       <-- ---ZAT14                                            <---------ARR11(3) --------->ARR11(3)        <-- ---ZAT18      <-----------TGA1                     <------ZmHOX2a(1)   <---------ARR11(3)       ---- -ZAT14----------->HVH21                            =============================HOX2a_HOX2a     <---   gttcatagtctgaccttcgtcatcgtcgaacaaatacaacatttttcgattagaggatcacccctagacatatagatcgttgtggactaaacatatggtt  17925300  Previous    Next  AGI:  At5g44420.1    Description:  PDF1.2 (Low-molecular-weight cysteine-rich 77). Identical to Low-molecular cysteine-rich antifungal protein LCR77 precursor (LCR77) [Arabidopsis Thaliana] (GB:Q9FI23;GB:P82786); similar to PDF1.2b (plant defensin 1.2b) [Arabidopsis thaliana] (TAIR:AT2G26020.1); similar to putative plant defensin PDF1.3 [Arabidopsis halleri] (GB:AAY27738.1); contains InterPro domain Gamma thionin; (InterPro:IPR008176); contains InterPro domain Knottin; (InterPro:IPR003614) Range:  from: 17924296    to: 17924825    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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