Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    --------------->AGL15                  --------->TOE2(3)                            ----------->GT1            <---------ARR11(3)                                 <---------ANAC58             ---------       <---------HSFC1(1)                                      --------->ANAC55(2)        ---------->DOF2       --------->HSFB2a(2)                                     <---------ANAC55(2)     --------->AtLEC2       --------->HSFC1(1)                                      <---------ANAC58        --------->ANAC58       <---------HSFB2a(2)                                    <-------TEIL             --------->ANAC46 <---------DAG2 ------->TEIL                                <---------ARR14(2)         --------->ANAC58 <----------DOF2-------->P <---------TOE2(3)                --------->ARR14(2)     <-----------GT1 --------At4g35610--------->TOE1(3)              ----------->GT1              ----------->GT1   cagctttttctcgaaatctacctcaaattgaagttgaactcgagtttcgaactgcaaaatcggatgcgtaacaatgcgaatggttttacaggcaaagtaa  17894600                                                                                                -----                                                                                                -----                             --------->ALFIN1                                            <---------ANAC46                           --------->CCA1(2)                                             <---------ZAT6                        ----------->ARR10                        --------->ALFIN1        ----------->GT1                <---------GLK1(1)                            <---------At5g28300     <---------ZAT14 -->GT1      <---------TOE2(3)<---------LBD16               --------->MYB52(1)       --------->ZAT14<   atccaaattagatttaagaaatcggagagatttgggggaaatgacaaatgggtattgaagtttaacggtggagagagcgagagagagagtagtgtgaaac  17894700               --------->MYB52(1)                                                          <---------WRKY38(1)        --------->ETT(2)                                                                   <---------WRKY12        ----------->HVH21                                                                  <---------WRKY45        <---------ETT(2)                                                                   *TSS       <------NtERF2                                                                      --------->WRKY18(1)     <---------MYB46(3)                                                          ====================     <---------DEAR3(1)                                                          <----------DOF2  ---  <---------MYB46(3)                                                             --------------->AGL15 --------->ALFIN1<---------ANAC46                                                <---------DAG2  ---- <---------AtMYB61    <------ZmHOX2a(1)                                       ------>ZmHOX2a(2)------ ---->ANAC58  ----------->TGA1           ---------->DOF2                     <------ZmHOX2a(2)------- ---->ANAC58  ----------->HVH21 <---------TOE1(3)                   <---------YAB1       <-----------HVH21 xxxxxxxxxxxxxxxxsmallRNA(i)    <---------TOE2(3)           ---------->DOF2<---------GLK1(1)<--------   gcagtggtcgtcgacagtgacggaggagaattttagggtttgtgaaagaatttagaagaaacaaaagaagatgatggagatcgctttttagggtcaacga  17894800                                        --------->MYB46(3)                                        <------------MYB.PH3(1)                                   --------->ANAC58                                   --------->bZIP60(1)                                   --------->ANAC55(2)                                   <---------ANAC55(2)              ----------->GT1                                   --------->ANAC58             --------->MYB52(1)                                   --------->ANAC46             <-----------GT1                                   --------->ANAC55(1) <---------AHL20(2)    <---------At4g35610<---------MYB52(1)------->GAMYB <---------AHL20(1) =================================================================MADS_MADS --->NtERF2           --------->LBD16  --------->RAP2.6(3) <---------AHL20(2) ----->DEAR3(1)      <---------ANAC58 --------->MYB52(1)   --------->AHL20(2) ->GAMYB <---------RVE1(1)         --------->O2   --------------->AGL15                          ---- -->MYB46(3)         <---------ANAC58----------->HVH21 --------->AHL20(2)                ----------->GT1 -DOF5.7(2)  <---------AHL20(2)    <---------bZIP60(1) --------->AHL20(1)   ---------->DOF2      <---   cgacgatgctgatatttttatgtccgtgagataaatcacgtaacggccatttcttattttattaattaacgggtgaaaaaaagaggggaataggtataaa  17894900                                                                   --------->AtMYB61                                                                   <---------ALFIN1                                                                --------->REM1(1)                                                                --------->ANAC46                                                               <xxxxxxxxxxxxxxxxsmallRNA(le3)                             <---------ARR11(3)                <xxxxxxxxxxxxxxxxsmallRNA(fl3)                           <xxxxxxxxxxxxxxxxsmallRNA(s)        <xxxxxxxxxxxxxxxxsmallRNA(se3)                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------ZAT14                          <xxxxxxxxxxxxxxxsmallRNA(le3)        --------->ZAT14                         <xxxxxxxxxxxxxxxxsmallRNA(i)         <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                         <xxxxxxxxxxxxxxxxsmallRNA(le3)       <xxxxxxxxxxxxxxxxxsmallRNA(se3)                         <xxxxxxxxxxxxxxxxsmallRNA(si3)      <xxxxxxxxxxxxxxxxsmallRNA(le3)                   ------>ZmHOX2a(2) <---------ANAC58        <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 --------->ARR14(2)  <---------ANAC46        --------->ANAC46              <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      <xxxxxxxxxxxxxxxxxxsmallRNA(se3)              <---------TOE1(2)<---------DAG2                <xxxxxxxxxxxxxxxxxxsmallRNA(le3)             <-----------RAV1(2)<----------DOF2            <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             <---------LBD16 --------->ARR11(3)            <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <xxxxxxxxxxxxxxxxsmallRNA(s)                 --------->MYB46(3)            <xxxxxxxxxxxxxxxxsmallRNA(s)                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           <xxxxxxxxxxxxxxxxsmallRNA(s)           --------->ANAC55(2)   <---------ALFIN1    ---------          ------>NtERF2 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <xxxxxxxxxxxxxxxxsmallRNA(i)  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  *TSS        <---------YAB1          <xxxxxxxxxxxxxxxxsmallRNA(s)  --------->REM1(2) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <xxxxxxxxxxxxxxxxsmallRNA(s)<---------ANAC58     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        --------->ATERF1(1)<xxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <xxxxxxxxxxxxxxxxsmallRNA(s) <---------AtLEC2     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       --------->At4g35610<xxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <xxxxxxxxxxxxxxxxsmallRNA(s)  <---------ANAC55(1) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <---------At4g35610<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(si3)       --------->ZAT2   <xxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   ======================RAV<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->ANAC46        <---------AHL20(2)   <-----------RAV1(1)  <xxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<------- ----->AHL20(2) <------ZmHOX2a(1)   <xxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------->ANAC46    --------->YAB1 ------AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(s)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)     <---------TOE2(3)   aaaatatggtgctgcccaggatcgaactggagaccttttgcgtgtaaggcaaacgtgataaccactacaccacagcaccttgatgttgagattataatgt  17895000                                  ------>ZmHOX2a(2)                           --------->ICU4                        --------->ICU4                        <---------YAB1                 --------->ATHB12                      --------->YAB1             <---------AHL20(2)                      <---------ICU4            <---------AHL20(1)          <---------YAB1                     <---------ATHB12           <---------AHL20(2)       <---------AHL20(2)         - <----------DOF2--------->ANAC55(2)             --------->AHL20(2)     <----------DOF2      --------- >YAB1   <---------ATHB12<---------ICU4   --------->TOE2(3)         --------->ICU4      <---------ZAT6 --TOE2(3)      <---------ANAC55(2)      --------->At4g35610 <---------ANAC46     --------->ZAT6<----   tatcttttctaatcacttacttaatcataattttgatctaattagcttaattttttttgatttgtgggtaattcttttatttttagactagtgtaaggca  17895100                                    --------->AHL20(2)                        <---------ANAC58                        <---------ANAC55(2)                        --------->ANAC55(2)                        <---------ANAC55(1)                        <---------ANAC46                        <---------ANAC58                       <---------------AtSPL8 --------->AHL20(2)                       <-----------------------TaNAC69(2)                       --------------->AtSPL8 <---------AHL20(2)               <-----------GT1              <---------AHL20(2)  --------->TOE2(3)     >>>>>>>>>GATA-1 <---------AHL20(2) -------->AHL20(2)     --------------->AtSPL3<---------AHL20(2)        <---------AHL20(2)          -- >ANAC46     --------->AHL20(2)  --------->YAB1   <-------TEIL         --------->AHL20(2)         <-- ---TEIL    XXXXXXXXXXXXXXXXXXXX>MIR4243     --------->AHL20(2) --------->At4g35610   --------->YAB1   cataaattgagtcaaatttatagattacgtactaaacataaattgaattaaattcatagataaaacagctaaattttttttttactacttataacttata  17895200                                                      --------->TOE2(3)                         xxxxx                                               --------->ANAC58                                 xxxxx                                               --------->ANAC58                                xxxxxx      <------ZmHOX2a(2)                       --------->DAG2                      ----------->GT1     --------->ARR11(3)                      ---------->DOF2                     --------->ANAC58     <---------ARR11(3)                   --------->AHL20(2) --------->TOE1(3)   --------->ANAC58 ------->YAB1-------->P                   <---------AHL20(2) --------->TOE2(3)   ----------->GT1xxxxx -----TEIL --------->MYB46(3)    <------ZmHOX2a(2)    --------->TOE1(3)        --------->MYB52(1)xxxx   ttcataagatcaaacaaccatttgataactcatagatcaaacatttaaaaagcaaaccttaaaccctaaatactaaatacaaaacggaaaaatatagagc  17895300                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                               <----------DOF2                                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              --------->ARR11(3)             <xxxxxxxxxxxxxxxsmallRNA(fl3)         --------->TOE2(2)  ----------->GT1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         --------->TOE1(2)  <---------MYB46(3)<---------ICU4   --------->ANAC58        --------->YAB1     <---------AtMYB61<xxxxxxxxxxxxxxxxsmallRNA(fl3)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)         --------->ICU4   --------->ANAC58      xxxxxxxxxxxxxxxx>smallRNA(i)------>NtERF2       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->ANAC58 <---------AtLEC2      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------ARR11(3)   --------->ANAC46<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        --------->ANAC58  --------->GLK1(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <-----------GT1    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxx>smallRNA(le3)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       --------->ARR11(3) xxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------GLK1(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)------ xxxxxxxxxxxxxxxxx>smallRNA(le3)    xxxxxxxxxxxxxxxx>smallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxsmallRNA(i)  <xxxxxxxxxxxxxxxxsmallRNA(i)  <-------- xxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(i)--------->ANAC46 <---------GLK1(2)   taaaaacgaaacataagaaattgcagggagtggtttttagaatttccatctttgcagccaaacacacacaattaggcttcaagaatctttgattatgaaa  17895400                           <-----------GT1                         --------->AHL20(2)                         --------->YAB1                      --------->YAB1                     --------->AHL20(2)                <------ZmHOX2a(2)                                                <---------YAB1                =====================================HOX2a_HOX2a         <---------ANAC58               --------->AGP1                                            <---------ANAC46               --------->ARR14(2)                                        <---------ANAC58  <------MYB83               <---------ARR14(2)                                     <---------AtMYB61    <------MYB46(1)    --------->YAB1  <---------MYB52(1)                        <---------ANAC58 <---------ICU4   <---------YAB1<-------TEIL                                 <---------ANAC46<---------YAB1 ---->DOF2     <---------ARR11(3)                             <---------ANAC58--------->ICU4    <---- -YAB1         --------->ARR11(3)             <------ZmHOX2a(1)  ----------->ARR10     --------->ATHB12   agactatgacaaaacaagatccattaattatacaagttgatgagagtaggaatggaactaaaatgcgtagagatggtgtgattatgacaagattggtagt  17895500  Previous    Next  AGI:  At5g44370.1    Description:  transporter-related. similar to ANTR2 (anion transporter 2), organic anion transmembrane transporter [Arabidopsis thaliana] (TAIR:AT4G00370.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47533.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64710.1); contains InterPro domain Major facilitator superfamily MFS-1 (InterPro:IPR011701); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain MFS general substrate transporter (InterPro:IPR016196) Range:  from: 17892112    to: 17894791    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g44375.1    Description:  pre-tRNA. tRNA-Val (anticodon: TAC) Range:  from: 17894907    to: 17894979    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version