Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            --------->AHL20(2)          --------->AHL20(1)         --------->AHL20(2)    <-------TEIL  <---------ARR14(2)  --------->ARR14(2)                                                                        <-------- ---ZmHOX2a(2)             --------->REM1(2)              --------->ANAC46                <---------ALFIN1 ---->AGP1<---------AHL20(2)                             ------>ZmHOX2a(1)       <---------ATHB12 -----ARR14(2)          --------->TOE1(3)      --------->ZAT2                  --------->WOX13(1) ---->ARR14(2)          --------->TOE2(3)      <---------ZAT2               --------->GLK1(2)    <--- ---->ARR11(3)      ------>ZmHOX2a(1)          --------->At4g35610 <---------HSFB2a(2)   <---------At4g35610 --->At4g35610     <---------MYB59             <---------At4g35610 --------->HSFB2a(2)   --------->At4g35610   tccagattcaaaaaaattgttcctaaccttgaagacaatcgctgttctcagcttccttcctcacaacatcgagaacagaatcaatcaactcagcaccttc  17877900                                                                                       --------->CCA1(2)                                                                                      <---------AGP1                                                                                      --------->AGP1                                                                              --------->ANAC58                                                                            ------>MYB46(1)                                                                            ------>MYB83------>ZmHOX2a(2)                                                                           <---------SPL7                                    <---------WOX13(1)                    <---------MYB59                               <------NtERF2                       <---------ARR11(3) <---------ARR14(2)                               <---------At4g35610                 --------->ARR11(3) --------->ARR14(2)                              ----------->RAV1(1)                  --------->GLK1(2)  <---------ARR11(3)                              ------>NtERF2                        <-----------ARR10----------->ARR10                           ------>NtERF2                           --------->ARR14(2) --------->ARR11(3)                           --------->LBD16                         <---------ARR14(2)<---------CCA1(2)                          --------->ANAC46                    ----------->GT1 --------->DEAR3(2)-----                          --------->HSFB2a(2)                --------->ANAC58 --------->ANAC58  <----         <----------DOF2  <---------ATERF1(2)                --------->ANAC58--------->SPL7     -----        <---------DAG2    <---------ETT(1)                 ====================================HOX2a_HOX2a     <-----------GT1      <---------HSFB2a(2)           --------->YAB1----------->HVH21<------ZmHOX2a(2) -HSFB2a(1)              <---------LBD16  ---------->DOF2  <------ZmHOX2a(1)--------->MYB52(1)<xxxxxx ------ANAC46      <---------MYB52(1) <---------WRKY18(1)  ===================================HOX2a_HOX2a   ggtgtaatgacctttcgcccagttatttccggcaccagattgaccaaagacgaagttatcaggacggaaaatctgaccgaacggaccagatctgagagaa  17878000                                                 <---------ALFIN1                                             <----------DOF2                       --------->YAB1   --------->ANAC58                   <-------TEIL         --------->ANAC58                  ==========================HOX2a_HOX2a                                        <-----                  <------ZmHOX2a(2)     --------->HSFB2a(1)                                  --------                 <---------ARR11(3)     <---------HSFB2a(1) <-------TEIL             ---------->DOF2< ---->GLK1(2)    --------->AGP1        --------------->AtSPL3                       <-------TEIL----- -----ARR14(2)   --------->ARR14(2)    --------------->AtSPL8<---------ANAC46       --------->WRKY18(1) ---->ARR14(2)   <---------ARR14(2)  <------ZmHOX2a(1)<---------MYB52(1)        <-------TEIL--------- xxxxxxxxxxxxxxsmallRNA(s2)---------->DOF2 ------->TEIL  <---------ZAT2    <---------------------WRI1   tccatggtaccaggctccagatccataagaacagcgcgaggaacgtactttccaccgctagcttcgttgaaatagacatcgatacgttcaagctgtaacg  17878100        <------NtERF2       ------>NtERF2                            <------ZmHOX2a(2)      --------->DEAR3(1)                       --------->ARR11(3)      ----------->HVH21                        <---------ARR11(3)     --------->RAP2.3(1)                      --------->At4g35610        ------>ZmHOX2a(2)         -- --------->ARR14(2)                    --------->MYB52(2)              --------->ARR14(2)         <-- --------->GLK1(2)               <---------ANAC58                      <---------ARR14(2)         --- <---------ARR14(2)              <---------ANAC58             <----------DOF2           <---------At5g28300 ----ANAC46    <---------WRKY18(1) --------->ALFIN1        <---------ARR11(3)          <---------WRKY18(1) ->MYB52(1)   --------->WRKY38(1)<---------ANAC55(1)    --------->HSFB2a(2)           --------->WRKY12 ---------GLK1(2)<---------------------WRI1   <---------At4g35610 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) -->GAMYB     ----------->HVH21  <---------ANAC46       <---------HSFB2a(2)           --------->WRKY38(1) -->HVH21<---------ANAC46 <---------YAB1<-----------HVH21--------->LBD16<------ZmHOX2a(2)-------->ZAP1   gagaatcgccgacgtattgaccggtgtgatcaatgccgtgttcgtcgcagatcacttcccagaactttgctccgatctggtttccacattgaccgccttg  17878200         ------>ZmHOX2a(2)        <---------GLK1(1)        <------ZmHOX2a(2)        --------->GLK1(1)       <---------ARR14(2)       --------->ARR11(3)       <---------ARR11(3)       --------->ARR14(2)                                                                   <--------      <------ZmHOX2a(1)                                                         <----------DOF2 ------->CCA1(2)                                                           <---------ATERF1(1)     -- -------ARR14(2)   <---------AHL20(2)                                      ------>NtERF2  <---------- ------>ARR14(2) <------------------------ANAC81       --------->AHL20(2) <---------DEAR3(1)<--------   gatatgaaggatctctctcattttttttttttttggtttcttcgtcaagagcaaaaaaaaaatgagaagaaaatgggcgactcttttttttttttcttgt  17878300                                                    --------------->AGL15                                                    <---------------AGL15                                             <---------ICU4                                             --------->YAB1    <----------DOF2                         --------->ICU4       --------->ANAC55(2) -ANAC58                               ----------->GT1<-----------TBP ---->ZmHOX2a(1)   ---------->DOF2     <---------ANAC55(2)       <---------ANAC58 -GT1        ----------->GT1  <---------MYB46(3)  --------->At4g35610 -ANAC58    ----------->GT1 *TSS       --------->ANAC55(2)       <---------ANAC58           ---------   ccttggctttgaataggtttaaaaagagggatttgttgaataggtaataatcagctatatatagtttacgtcttcttcaataagttttctaaaatagtta  17878400                                                                                         <---------At4g35610                                                                                         --------->At4g35610                                                                                         <---------LBD16                                                                                    ----------->HVH21                                                                                <----------DOF2            ------>ZmHOX2a(1)               <---------YAB1                    --------->At4g35610            <---------YAB1              <-----------GT1                     --------->ZAT14      ----    <------------CBF                 ----------->GT1                        <---------ZAT14      <--- -->GT1  ---------->ID1      <---------------AtSPL8               --------------------->WRI1   <-----   ttttcaaattggtccttatagtttgttttatcttgtacattgtaacatgatagttttagataatttgtttttgtactctgcgctgtatgacagcggagga  17878500                       <---------O2                       <---------TGA1a                       --------->O2                       --------->TGA1a                     <---------ALFIN1            <---------ZAT14          --------------->AtSPL3        --------->ARR11(3)                         <---------TOE2(3)                    --------->MYB59        <---------ARR11(3)                       <---------AHL20(2)                  <---------ARR14(2)       <---------CCA1(2)                     ========================================================      --------->AHL20(1)                     --------------->AGL15                   --------->ARR14(2)      <---------ARR11(3)                  <-----------GT1                         --------->YAB1      --------->ARR11(3)            <---------CCA1(1)            --------->YAB1  <-----------------AG      <---------AHL20(1)            <---------RVE1(1)         --------->YAB1     ==================== ----->GLK1(1)    --------->PCF2   --------->ARR11(3)        <---------AHL20(2)--------->YAB1 ------GLK1(1)--------->ZAT14      <---------ARR11(3)       --------->AHL20(2)--------->KAN4(1) -ZmHOX2a(1)--------->ZAT14        <---------ARR14(2)    <---------YAB1      <---------KAN4(2)<------   tttcaaaatatatctgtactgtcccacttgtcttgaagatatttttactatttaagtttatttttaataacaagaatagaataatcatattcggtaatag  17878600                                        --------->YAB1                            <---------HSFB2a(2)                            --------->HSFB2a(2)                        <---------MYB52(1)                      <---------ANAC46<-----------GT1                      <---------------AGL15                      --------------->AGL15                     <-----------------AGL3                     <-----------------AGL2                     ----------------->AGL1   --------->YAB1                   <---------AHL20(2)                     ---------->ID1--------->YAB1                              --------->ATHB12                     ----------------->AGL2  <----------ID1                   <---------AHL20(1)                     ----------------->AGL3<---------ICU4   <---------YAB1    --------->AHL20(2) =====================================MADS_MADS            <---------AHL20(1) --------->AHL20(1) =====================================MADS_MADS         --------->TOE2(3)     <---------AHL20(2) ---------AtSPL8   <-----------GT1--------->ICU4     <-----------GT1   ----------->GT1         <-----   tacaaagaaaattagttttttttgccgtttatagaaattataacataatgacaaattacattatttttgaaaattgaaaatttattgaagggagagattc  17878700                                            --------->ARR14(2)                                        <-----------------AG                                       XXXXXXXXXXXXXXXXXXXX>MIR826                                  --------->At4g35610                                ------>ZmHOX2a(2)                               --------->GLK1(1)                               <---------GLK1(1)                               <------ZmHOX2a(2)                              <---------ARR14(2)                              --------->ARR14(2)                              --------->GLK1(2)                              <---------ARR11(3)                      <---------AHL20(2)                              <---------ARR14(3)                   <--------HAHB4            <------ZmHOX2a(2)                              --------->ARR14(3)                   <---------ICU4           ---------                              --------->ARR11(3)                  --------->ICU4            <--------     <---------AHL20(2)       <---------AGP1<---------ARR14(2)  --------->YAB1        <---------ZAT14  ----------->GT1            <------ZmHOX2a(1)                <---------YAB1          --------->ZAT14 --TEIL                   <-----------RAV1(2)      --------->CCA1(2)  --------->AHL20(2)   --------->GLK1(1)   attctagttaatttgaatagtattcgactcaggatctgctaaaccggttttggatacaacgattatgcataattaaacaagttttgactacagagatcat  17878800  Previous    Next  AGI:  At5g44340.1    Description:  TUB4 (tubulin beta-4 chain). Identical to Tubulin beta-4 chain (TUBB4) [Arabidopsis Thaliana] (GB:P24636;GB:Q9FKV4); similar to TUB6 (BETA-6 TUBULIN) [Arabidopsis thaliana] (TAIR:AT5G12250.1); similar to TUB9 (tubulin beta-9 chain), structural molecule [Arabidopsis thaliana] (TAIR:AT4G20890.1); similar to TUB3 (TUBULIN BETA-3), structural molecule [Arabidopsis thaliana] (TAIR:AT5G62700.1); similar to Tubulin beta-1 chain (Beta-1-tubulin) (GB:Q9ZPP0); similar to beta-tubulin R2242 - rice (GB:JC2511); similar to Tubulin beta-3 chain (Beta-3-tubulin) (GB:Q40665); contains InterPro domain Beta tubulin, autoregulation binding site (InterPro:IPR01 Range:  from: 17876422    to: 17878328    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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