Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     --------->YAB1                                      --------->ARR14(3)                          <<<<<<<<<ARR2                                      --------->ARR14(2)                          <---------ATHB12                                      <---------ARR14(3)                      <<<<<<<GRF7                                      <---------ARR14(2)                    ------>ZmHOX2a(1)                                      --------->GLK1(2)--------->At4g35610  ----------->HVH21                                      <---------ARR11(3)                  <---------At4g35610                                      --------->ARR11(3)            <---------ANAC58                      ------>ZmHOX2a(1)        --------->YAB1       <---------ANAC58            -----           --------->REM1(1)     ------>ZmHOX2a(1)     <---------At4g35610----------->RAV1(2)  <-----         <----------DOF2         --------->LBD16 <---------YAB1 <----------DOF2 --------->WOX13(1)   tgctcttagcgcttcatcaaactcctcttgtgttcctgaaaatcttctatcacgataagctgatagctttgcttgctcctgacaatcaaaaaccccaaac  17820900                                                                                  --------->ARR14(2)                                                                                  <---------ARR14(2)                                                                                --------->LBD16                                                                              <---------LBD16                                                                            -------->P                                                                        --------->ANAC46                                                                       --------->LBD16              ------>MYB83                                            <---------HSFB2a(2)              ------>MYB46(1)                       <-----------HVH21 --------->HSFB2a(2)     --------->TOE1(2)    --------->MYB46(3)  <---------GLK1(2)    --------->GLK1(2) ---->YAB1  <---------MYB59                --------->YAB1         <---------GLK1(2) ----ATHB12 --------->AtMYB61           --------->WOX13(1)       --------->At4g35610   atgaaatcgtgagaccaaaccctagacaacaacttcaaaaatcaattagaatcgcttcagacccatcagattccagacaacccggatactaaattcacta  17821000          <---------ARR14(2)          --------->ARR14(2)          --------->GLK1(2)          ------->TEIL                        --------->ARR14(2)         <---------GLK1(2)                    <---------ARR14(2)         <---------ARR14(1)                 --------->LBD16      <---------TOE2(3)           --------->ANAC58                      <---------DAG2     <---------DOF5.7(2)          --------->ANAC58                      <----------DOF2      --------     --------->MYB52(1)          --------->DAG2                 --------->GLK1(2)--------->TOE2(3)   --------->DOF5.7(2)          ---------->DOF2                 <---------ARR11(3)           --------  --------->TOE1(3)        --------------->AGL15                --------->ARR11(3)      ---------->DOF2  --------->TOE2(3)        <---------------AGL15            --------->YAB1     ------->TEIL----------   aaaacattaacgaatctcgattttctatgctagaaaaagcaaaacccagaaatggtttccgataaaaatctaaactttatgtaccttgaacaaagaagcc  17821100                               --------->YAB1                        --------->TOE1(2)                        --------->TOE2(2)        --------->At5g28300   --------->ICU4   ----------->HVH21  --------->GLK1(2)                              <---------ANAC46   <---------REM1(2)  --------->ARR14(2)                           --------->LBD16  <----------DOF2     <---------ARR14(2)                  <------MYB46(1) ->ANAC58             ------->TEIL          <------ZmHOX2a(1)    <---------LBD16                    < ->ANAC58        ----------->GT1 <---------YAB1          --------->MYB59        >>>>>>>>>TBF1       - >DOF2 xxxxxxxxxxxxxxxxx>smallRNA(se3)   <------ZmHOX2a(1)<------MYB83   ---------->DOF2        -----   atcgcttcacggtgagaagaagtgaatctgcgatgatgagagaggaggatagcttaaattaggtctatgcggggtgaaagaagaagaagatgagcgagaa  17821200                                                                                                 ----                                                                                              <------                                                                                              ------>NtERF2                                                                                              -------                                                                                             <-------                                                                                            *TSS-----                                                                                            <--------                                                                  <---------ARR14(2)   <---------ZAT18      <------ZmHOX2a(1)                                           --------->ARR14(2)   --------->ZAT18 ---------HSFB2a(2)                        --------->TOE2(3)  --------->At4g35610     <------ZmHOX2a(1) -------->HSFB2a(2)                --------->DAG2          --------->At4g35610      --------->ANAC58 ---->GLK1(1)     --------->ZAT6  ---------->DOF2    ---------->DOF2                --------->ANAC58   atcgagaaggagagacacttacactcgtcttcttcaaaaagggaaccctaatttctaaagcagaagcagaactgatagaagaaggcaaggacactccggc  17821300                               --------->ANAC46                                    <---------AHL20(1)                               --------->ANAC58                                    --------->AHL20(2)                               --------->ANAC58                                    --------->AHL20(1)                               <---------ANAC55(2)                              <---------AHL20(2)                        <---------ALFIN1                                       --------->AHL20(2)        --------->GLK1(2)      --------->ANAC55(2)   <---------AHL20(2)        <---------AHL20(2)        <---------ARR14(2)   --------->MYB52(1)      --------->AHL20(2)   <------MYB46(1) -->NtERF2           --------->PCF2  --------->TOE1(3)                    <------MYB83              - ---ATERF1(1)       <-----------TCP11(1)         <---------YAB1       <-----------RAV1(1)  <---------AHL20(2) -->LBD16 <---------LBD16   <---------SPL7      ------------>CBF     <---------YAB1<---------AHL20(2) --DEAR3(1) --------->LBD16--------->AtMYB61----------->GT1         <------------CBF       --------->AHL20(2) ---->DEAR3(1)   <---------AtLEC2    --------->TOE2(3)            <---------YAB1--------->AHL20(2) -- -LBD16 --------->ARR14(2) <---------DAG2 ---------->DOF2         <---------AHL20(2)<---------AHL20(2)   gactctcgagtatccggtttcatggcccaccttacgaaaccttacaaagttacaattaattcacaaatattattgttggtattaatttaatattaaaaca  17821400                                                                     --------->AHL20(2)                                                                     -------->ATHB1                                                                     <--------HAHB4                                                                     --------->ATHB51                                                       <------MYB83  <---------ICU4                                                      --------->MYB59<---------AHL20(2)                                                  --------->LBD16   <---------ATHB51                                                <---------LBD16     <---------ATHB12             <---------AHL20(2)          --------->YAB1<------MYB46(1)       <---------ARR14(2)             --------->AHL20(2)          <-----------GT1            --------->ICU4 <----------DOF2             --------->AHL20(1)     --------->AHL20(2)<---------AtMYB61      --------->ARR14(2)   --- -------->AHL20(2)                 <---------ATHB12  xxxxxxxxxxxxxxxx>smallRNA(i)  <---------DAG2 --- ------->AHL20(2)   ------->TEIL --------->WOX13(1) <---------MYB52(1)  <-----------GT1        <-----   aataaaaaacccaaattttttgcatctaaaatgttcaatcaaataacaattccggtttggtttcggttcaattatttcggtttcgctttatttgtttaaa  17821500                                                                   <---------ALFIN1                                                                ------->GAMYB                                                              ------>MYB46(1)                                                              ------>MYB83                                                              -------->P                                                            <---------MYB111(1)                                           <---------ICU4   --------->AtMYB61                                          --------->ICU4   --------->MYB46(3)                                        --------->YAB1     --------->DEAR3(2)                             <------MYB46(1)          --------->SPL7 ---------->DOF2             <------MYB83 <---------YAB1   <---------MYB55(2)               <-------- ------>TOE2(3)             --------->MYB59-------->HAHB4 ------->TEIL                      --------- ------>TOE1(3)             --------->MYB46(2)      --------->TOE2(2)             ----------->RAV1(2) ------GT1 ----------->GT1<---------MYB52(1)        --------->TOE1(2)  ----------->HVH21------>ZmHOX2a(2)   ccataaaaccaatttgtaattcaatttagttaggtctcgacataataatcgaaccctacgaaccaacccaaacccgaccgaaaaccctgatccaaatcca  17821600                                                             ------>ZmHOX2a(2)                                                            <------ZmHOX2a(2)                                     --------->LBD16       <---------ARR14(2)      --------->TOE1(3)                                    --------->ANAC46       --------->ARR14(2)      --------->TOE2(3)<                                  xxxxxxxxxxxxxxxx>smallRNA(i)                --------->YAB1     ---- -ARR14(2)                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <---------ATHB12    ---- >ARR14(2)            ------>ZmHOX2a(1)              <---------ALFIN1 --------->GLK1(1)          <---   aaaatttcaaatattcaacgggtcctaaacttcaaaacccgaaaaactctaacccaaacccgatctgaacaaatatccaaacatacctcaaatatttgat  17821700           --------->YAB1          <-------TEIL                                                                     ----------     <---------AHL20(2)                       <---------RVE1(1)                     <---------ARR11(3)     --------->AHL20(2)      <---------AHL20(1)                                     --------->AHL20(1) --------->AHL20(2)          --------->ARR11(3)                                     --------->ARR11(3) ---------AHL20(2)           <---------ARR11(3)                       <---------TOE1(3)   <xxxxxxxxxx ----->AHL20(2)              --------->AHL20(1)                       --------->MYB59     <---------TOE2(3) ----->AHL20(1)         ----------->GT1       <---------CCA1(1)       <---------TOE2(3)  ---------->DOF2 ------AHL20(1)  --------->AHL20(2)   <---------GLK1(1)     <---------ANAC46 <----------DOF2   atattatttatattcatacttaaatacagaaaatatttggatatttggatattttagttattttgtgtattttaggttactttggatatattaaagtaaa  17821800  Previous    Next  AGI:  At5g44200.1    Description:  CBP20 (CAP-BINDING PROTEIN 20); RNA binding. similar to RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G46020.1); similar to unknown [Populus trichocarpa] (GB:ABK96113.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 17819041    to: 17821292    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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