Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            <---------MYB46(3)                       <---------MYB46(3)                  <---------TOE1(2)               <---------MYB46(3)              <---------TOE1(2)           <---------MYB46(3)           --------->MYB52(2)          <---------TOE1(2)                                                --------->AHL20(2)         <---------MYB52(1)                                        --------->AHL20(2)               -       <---------MYB46(3) <---------REM1(1)                      --------------->AGL15            <--       --------->MYB52(2) <-----------RAV1(1)             <---------AHL20(2)<---------YAB1       ---- ------MYB46(3)--------->MYB52(2)            <---------TOE1(2)   <----------DOF2               <----- -----RAV1(1)<---------MYB52(1)       <<<<<<<<<TBF1     <----------DOF2    <---------AHL20(2) -------   tgttgttgttcgttcgttcgttcgattgttgttgctgttcttcttctcacgatttcatcttttatttcttttaatattaaaattgttctcggtttatatt  17800000       ---------->ID1   ------>ZmHOX2a(2) --------->ARR11(3) <---------ARR11(3) -------->YAB1 -------TOE2(3)                <---------AHL20(2)                      --------->TOE2(3)            < ----->YAB1     <---------ANAC58             --------->AHL20(2)  --------->YAB1                   --- ----AHL20(2)   <---------ANAC58 <---------TOE2(3)            --------->WOX13(1)                 <--- -->YAB1--------->ETT(2)   ----------->GT1   <---------AHL20(2) <---------ATHB12           ----------   aatgatcttgtcgatattgcgagactaaaatgtttaatgtttttgattttatttgtgaaattcccaatcacattcttagtagtagagagagaaaggtttt  17800100                       <---------RVE1(1)                      <---------ARR11(3)                      --------->ARR11(3)                         --------->TOE2(3)                      <---------GLK1(2)                          --------->TOE1(3)                --------->ZAT18                           <-----------HVH21                        -- ----------DOF2 --------->ETT(2)                    <---------DAG2                                --- ------->ID1<---------AtMYB61        <-----------GT1<----------DOF2                   <----------DOF2 --------GT1<-----------RAV1(1)    <----------DOF2------>ZmHOX2a(1)   ------------>CBF<---------MYB52(1) ->GT1   <----------DOF2  <---------YAB1    <<<<<<<<<TBF1 --------->TOE2(3)--------->YAB1         <--   ttctttttggtcttttggtggacagatttttattcttctttacttcttcttcctctttttcgtcaaaccataaacaataatccaaaccctttgttcttca  17800200                        ------>MYB83                        ------>MYB46(1)                      <---------MYB59                      <---------MYB111(1)                     --------->ANAC46                     --------->ANAC58                     --------->ANAC55(1)                     --------->ANAC58                                                           -----                   <---------ALFIN1                                                     --------->At4g35610 ------->CCA1(2) <---------ALFIN1                                          <-----------GT1 --------->At4g35610 ------>ARR14(2) --------->ANAC58             <---------ETT(1)       ------>ZmHOX2a(2)  <---------At4g35610 -------ARR14(2) --------->ANAC58    --------->AtMYB61        <----------DOF2    <----------DOF2-----   gatatgttcttctcttgacacacacctaatctttctccaccaaaatttccgaccaagtctcatacttttgatctgtttttcaactttctcatcagcccaa  17800300                                                                                         <---------HSFB2a(2)           <---------ANAC58                                                         <-----------RAV1(1)           <---------ANAC58                                               --------->ARR14(2)         <-----------GT1                                                  <---------ARR14(2)      <---------AHL20(2)    <---------ATHB12                         <---------ANAC46    ------------ --------->ICU4             ------------>CBF                  ------------>CBF      <---------MYB46(3) ---->ANAC58              --------->GLK1(1)                --------->GLK1(1)      <------------CBF ---->ANAC58       ----------->HVH21--------->TOE2(3)      <---------GLK1(1)  <---------LBD16       <   gtaagtatttttttcttacccatgactgaaatcaatttcattagtttttgtaatttctagggtttccaattttgtggatttggggattgttgcagaaaat  17800400                                     <---------MYB46(3)                                    <---------AtMYB61         ----------->GT1            --------->ALFIN1      <---------PCF2             <---------AtMYB61     <------MYB46(1)             <-----------RAV1(1)     <------MYB83                --------->ALFIN1    <---------MYB46(3)        --------->ALFIN1                                        <---------ARR11(3)   --------->ALFIN1        <---------TOE1(3)                                          --------->ARR11(3) <---------ZAT2         ----------->HVH21                             --------->At4g35610 <------MYB83         ----------->RAV1(2)                             <---------At4g35610 <------MYB46(1)      --------->At4g35610              --------->ANAC46  --------->At4g35610 ----->AGL1           =======================RAV     --------->MYB52(1)  <---------At4g35610 ---------AtMYB61   <---------ALFIN1<---------ANAC46<---------REM1(2)<-----------RAV1(1)   ggaaggtgggtctgaaaaaacaacacctgaaggttgtggtggtgagagtaagtctaaacggaaaatgaaaactgctgctcaacttgaagttcttgaaaac  17800500                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                        --------->AHL20(1)                                                                                        <---------AHL20(2)                                                                                        <---------AHL20(1)                                                                                        --------->AHL20(2)                                                            <---------YAB1             --------->AHL20(2)          --------->MYB52(2)                         <---------ANAC46       <---------ANAC46     <---     <---------TOE1(3)  ------>ZmHOX2a(1)         <---------MYB52(1) ---------->DOF2   <---------AHL20(2)     <---------TOE2(3)  >>>>>>>>>>>>>>>>>LFY --------->GLK1(2) <---------YAB1      <---------AHL20(2)   acttattcaggtttgtttctgtcttcctccattgtttttatatgaagtttctgttttgtgtttttataagtgaaagttttgtgttttaattttattttca  17800600                                                                                                =====                                                                                                -----                                                                                              <------                                                                                              =======                                <---------GLK1(1)                                            <-------                                --------->GLK1(1)                                           <------NtERF2                                <------ZmHOX2a(2)                                           ---------                               <---------ARR14(2)                                          ------>NtERF2                               <---------ARR11(3)                                         <---------RAP2.3(2)                               --------->ARR11(3)                                         <---------DEAR3(1)                               <-----------ARR10                                         --------->ATERF1(1)                               --------->ARR14(2)                                       <---------ATERF1(1)                               <---------AGP1                                          <---------ATERF1(2)            <---------LBD16   <---------ARR14(1)                                       <---------DEAR3(1)           ============================HOX2a_HOX2a                                     --------->DEAR3(1)    <---------DAG2         <---------------------WRI1                                 --------->At4g35610 ----->ZAT2=============================HOX2a_HOX2a                                   <---------LBD16 ------ZAT2------>ZmHOX2a(1)  <---------CCA1(2)                                       <---------At4g35610 ----->At4g35610    --------->CCA1(2)            ------->TEIL                         --------->ATERF1(1) ------->RAV1(2) --------->ANAC58               <---------GLK1(2)<-------GAMYB        --------->DEAR3(2) ------At4g35610 --------->ANAC58------>ZmHOX2a(2)           ------------>AtMYB77 <-----------HVH21 -   gctgagccttatccttcggaagctataagagcggatctctcagtgaaactgaatctttccgatagacagttacagatgtggttttgtcaccggcggctta  17800700                                   --------->SPL7                               <---------At4g35610                              <-----------HVH21                               --------->At4g35610                              --------->LBD16                            --------->TGA2(2)                                  --------->ANAC46                           <-----------TGA1                                   --------->MYB46(3)                           <-----------HVH21                                 ------>MYB83                           --------->TOE2(3)                                 ------>MYB46(1)                          ===========================MYC_MYB                --------->MYB52(1)                          --------->ANAC46                                 --------->AtMYB61                          --------->TGA1a                                  <---------ALFIN1      <---------GLK1(1)   --------->ANAC58                                <---------MYB55(2)      --------->GLK1(1)   --------->ANAC58                          ------>ZmHOX2a(1)  --------->ANAC58      --------->MYB52(1)                          --------->LBD16  --------->ANAC58  --------->ANAC58                               --------->TOE2(2)      <---------MYB52(1) ===================================bZIP_DOF                       --------->TOE1(2)     --------->LBD16 ----->DOF2         --------->ANAC58    ------------>MYB.PH3(2)    <---------LBD16      <---------DEAR3(1) ----DOF2          ------>NtERF2 <---------SPL7                 <---------ARR14(2)      <---------ANAC46 ===================================bZIP_DOF                    --------->ARR14(2)      <---------DREB2C(2) --ANAC46       ------>NtERF2<---------WRKY12         --------->MYB46(3)  --------->MYB46(3) >At4g35610    --------->ANAC46<------NtERF2        --------->MYB52(1)  --------->PCF2 <---------LBD16 -------->MYB52(1)--------->DEAR3(1)  <------ZmHOX2a(1)         <---------GLK1(1) <---------WRKY12   aagaacggaaatctactacgccgagcaaacgtcagcgtaaggagttagtaactccaacggctatggaatcctgggaaccacccgtcaatgccggtgattt  17800800                                                         ------------>AtMYB77                                                        ----------->TGA1                                                        ----------->HVH21                                                      <---------ANAC46                                                      <---------ANAC58                                                      <---------ANAC58   <----------DOF2                                                 --------->MYB52(2)     <-------GAMYB      --------->At4g35610                                                --------->ALFIN1       ----------->GT1     <---------ZAT2    <<<<<<<<<<E2Fb             --------->At4g35610 <---------AtMYB61   <---------MYB46(3)  --------->ZAT2    <------NtERF2           <---------At4g35610<------NtERF2   <---------MYB46(3)          <---------At4g35610   --------->LBD16          --------->At4g35610<-------GAMYB<---------MYB46(3)    --------->DEAR3(2)  <---------ANAC58   <---------HSFB2a(2)      <---------MYB46(3)      <---------RAP2.6(2)  ----------  <---------ANAC58   --------->HSFC1(1)      <---------ANAC46<-------GAMYB       ------->TEIL  <-----  <---------ANAC46   <---------HSFC1(1)      <---------RAP2.6(2)      <---------DEAR3(1)<---------At4g35610 <---------LBD16     --------->HSFB2a(2)  --------->ALFIN1 <---------ANAC46     <-----------GT1<-----   agtggcgggaaatgagcttgattctagaagagctgctcgaggcagtggcggtagtggtgtgacggttgtgaggcggtttaatgaaccgtcttctgctgag  17800900  Previous    Next  AGI:  At5g44180.1    Description:  homeobox transcription factor, putative. similar to HB-1 (homeobox-1), transcription factor [Arabidopsis thaliana] (TAIR:AT1G28420.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69797.1); similar to DDT; Homeodomain-related [Medicago truncatula] (GB:ABN08705.1); similar to hypothetical protein OsJ_018757 [Oryza sativa (japonica cultivar-group)] (GB:EAZ35274.1); contains InterPro domain DDT (InterPro:IPR004022); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Homeobox; (InterPro:IPR001356) Range:  from: 17800399    to: 17807238    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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