Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        <---------RVE1(1)                                          <---------TOE1(3)                                          <---------TOE2(3)       --------->AHL20(2)            <----         <-----------GT1            <---------YAB1    <---------CCA1(1)          --------->AHL20(1)   <---------TOE2(3)             <---------YAB1      --------->ARR11(3)          <---------AHL20(1) ------>ATHB12                <---------ARR11(3)     <---------ARR11(3)    ----------->GT1   --------   tcattgatgtataacctgtttcgattttccaagttattatgtttaaagttttggagattttttagtttttatataacatgaaaaatattaagctataatc  17689500                                                                              <---------ICU4                                                                            <---------TOE2(3)                                                                          --------->AHL20(2)                                                                          <---------AHL20(2)                                                                         <---------YAB1                                                                         --------->ICU4                                                                       --------->ATHB51                                                                       -------->HAHB4                                                                       <--------ATHB1                                                                       <--------HAHB4                                                                       <---------ICU4                                                                       --------->YAB1                                                                      --------->ICU4                                                                      --------->AHL20(2)                                                                      <---------YAB1                                                                    --------->YAB1      ----------->GT1            <-----------GT1                    <---------ICU4  --------->YAB1               <---------ATHB12       ---------->DOF2 <---------ATHB51    <----------DOF2 <---------YAB1            --------->AHL20(2)  --------->YAB1      --------->ICU4   <-----------GT1 -----ICU4             <---------AHL20(2) <---------AHL20(2)       <---------YAB1<---------AHL20(2) ->YAB1               --------->AHL20(2)<----------DOF2          --------->YAB1  --------->AHL20(2)   tttataatcagttaaattttagtataaaattcaataaaccatcttttatttataaaaaaagaatgcataataataattaatatttatttcgactttagtt  17689600                                           <----------DOF2                                   --------->AHL20(2)                                   <---------AHL20(2)                                --------->ATHB12   <---------AHL20(2)                            <---------AHL20(2)     --------->AHL20(2)                               =                           --------->AHL20(2) --------->AHL20(2)                                    <                           <---------AHL20(2) <---------AHL20(2)     --------->YAB1              ----                   --------->ARR14(2)   <---------AHL20(2) <------ZmHOX2a(1)        <---------AHL20(2)                   <---------ARR14(2)   <-----------GT1   ----------->GT1       --------->YAB1   <---   tatgttttcattttttctccaaattcgaattaaatgatttattaacttttaatttaaatcaggaaaatttttcatattacaaatataaaaatgtagtttt  17689700                                                                                  <---------------AGL15                                                                                --------->TOE2(3)                 <---------CCA1(1)                                        <---------ANAC55(2)                 <---------RVE1(1)                                        --------->ANAC55(2)                <---------ARR11(3)                                        <---------ANAC58       ----------->GT1                                                    <---------ANAC58       <----------ID1                                               --------->AHL20(2)   ---------->DOF2                                                  <---------YAB1=================== --------->AHL20(2)                                   ---------->DOF2     <---------ANAC46 <---------AHL20(2)                            ------>ZmHOX2a(2)    <---------AHL20(2) =================================================================================================MADS_MADS ---------------AGL15                        >>>>>>>>>ARR1         --------->AHL20(2) ----->AHL20(2) --------->ARR11(3)           >>>>>>>>>ARR2         --------->AHL20(1) ------AHL20(2)--------->YAB1               <------ZmHOX2a(1)      <---------AHL20(1)    ----------->GT1   taattaaaagagaaaaatgatatttttcaaacaaaactcataaataggatcgttttcaaagttgcccaatataatttcgtattcttaaatatagaaaatc  17689800                                  <---------AHL20(2)                                   <---------TOE1(3)                         <---------AHL20(2)                                            <---------TOE2(3)                        <---------AHL20(1)                                      <-----------GT1                        --------->AHL20(1)                                 ------->GAMYB              <------ZmHOX2a(1)  --------->AHL20(2)                      -------->P   --------->MYB52(1)    ----------------->AGL3 <---------TOE2(3)                             <---------At5g28300  --------->GLK1(1)     <---------AHL20(2)           --------->AHL20(2) --------->MYB52(1)      *TSS <---------ARR11(3)     --------->AHL20(2)   <----------ID1     <---------AHL20(2)    <---------DOF5.7(2) --------->ARR11(3)------------>CBF     ---------->DOF2         --------->AHL20(1) --------->TOE2(3) =====================MADS_MADS------->TEIL  ----------->GT1    <---------AHL20(1) --------->TOE1(3)   acagatatcaaatataggactaacaatttaatgaattttatccaaagacgaaaaaaaaaattctaatatatgactaaccgtataaccttaacgataggga  17689900                                                                                              -------                                                                                              <------                                                                                             <-------                                                                                      --------->AHL20(1)                                                                                      <---------AHL20(1)                                                                                      <---------AHL20(2)                                                                                      --------->AHL20(2)                                                                               <------NtERF2 --------             <---------TOE1(3)                                               --------->DEAR3(1)             <---------TOE2(3)                                               <---------DEAR3(1) <----            --------->MYB52(1)                                 <-----------HVH21     --------->AHL20(2)       <------ZmHOX2a(1)        ------->TEIL                  --------->AtMYB61--------->RAP2.3(1)---   ttagcgataggacttaacgatataaacacatatgtatatggttttcgacctctcttctccaaaaccatcacagagagagtcgccgaaataaattgaaatc  17690000       <---------ARR11(3)       <---------ARR14(3)       --------->ARR14(3)       <---------GLK1(2)       --------->ARR11(3)                              --------->ZAT2       <---------ARR14(2)                              <---------At4g35610             ------->TEIL     ----------->ARR10                                 <---------ZAT2            ------->TEIL -->ARR14(2)                                    <---------ICU4             ----------->HVH21 ---ARR14(2)                                   <---------YAB1              ------>ZmHOX2a(1) --GLK1(1)                    <----------DOF2--------->YAB1              --------->At4g35610 ->GLK1(1)             ------>ZmHOX2a(1)    <---------YAB1               <---------At4g35610 -----LBD16      <-----------GT1        <----------DOF2--------->At4g35610 ----------->TGA1 ------>LBD16 --------->ARR14(2)   <<<<<<<<<TBF1--------->ATHB12         ----------->RAV1(2)  -------   cggtgagaagattttggattcactccttccttctttcttcttctttatcatcatttgagctggttttggtatctctcctgacgaatttgaatctctcagc  17690100                                                  <---------AHL20(2)                                                  --------->AHL20(2)                                                <----------DOF2                                       <---------REM1(2)                                   --------------->AtSPL3                         <-----------GT1                                   --------------->AtSPL8                   <---------MYB52(1)     <-                             ----------------------->TaNAC69(2)            --------->TOE2(3)       --                            <---------ANAC58    --------->TOE2(3)         ----------->GT1         ---                            <---------ANAC46    <---------------AGL15     --------->MYB52(2) --------                            <---------ANAC58    --------------->AGL15    <-------TEIL      <---------SPL7                        <---------ANAC46   ------->MYC3                 <---------MYB52(1)--------->TOE1(1)                        <---------ANAC58   <-------MYC3               <---------ANAC58    --------->TOE2(1)                        <---------ANAC58  --------->ANAC46            <---------ANAC58   --------->HSFB2a(2)              <---------At4g35610 --------->At4g35610       ----------->GT1<-------GAMYB <---------HSFB2a(2) -->ANAC46    --------->At4g35610 <---------At4g35610       --------->YAB1<---------MYB46(3) <-------   cattttctcttctcgcatctgtgttttcgtgcttggagctgtacacgtttctttaatttgaatagtgattttgcgttcgttaattagccttctcgtacga  17690200                                                                                    <---------WOX13(1)                                                             <---------GLK1(1)    <--------ATHB1                                                     <----------CDC5              --------->ATHB12   <----------DOF2                                  <---------ZAT2               --------->ICU4 --------ZAT18          ----------->GT1             --------->ZAT2               <---------YAB1 ------->ZAT18          <---------MYB46(3)          --------->ZAT14             <---------WOX13(1) ------>ALFIN1      <---------TOE2(3)               <---------ZAT14           ------------>ATHB5 ->SPL7        --------->ATHB12                     --------->At4g35610   ------>ZmHOX2a(1) --TOE1(2)    --------->ICU4                        <---------At4g35610 ----------->RAV1(2)   gtgggctattttgggaatgatttaggtggttttaagttactgggtagtagtcactgctgagcgatttctgtttctcctgttgaatgattgattcagaaat  17690300                            --------->YAB1                           <XXXXXXXXXXXXXXXXXXXXMIR167A/B                          <XXXXXXXXXXXXXXXXXXXXXMIR167D                     --------->TOE2(3)                     --------->TOE1(3)                                                          <----                   <---------ARR11(1)                                                           <----                   <---------ARR11(3)                                                           <----                   --------->ARR14(2)                                              --------->AHL20(2)                  ------>MYB83                                --------->ARR11(3)   <---------AHL20(2)                  ------>MYB46(1)       <---------DAG2        <---------GLK1(2)   --------->AHL20(2)                  <---------ARR14(1)    <----------DOF2     ----------->ARR10  <---------ZAT6<-------                  <---------CCA1(2) <--------P         <---------YAB1    <---------YAB1<-------TEIL   ttgaaattcacatcgaaaccaaatcttaaatcatattggtagctttttttttgttttgtgattagatactgtttttttatagtattaaattcgttttggt  17690400  Previous    Next  AGI:  At5g43920.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G08560.2); similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G08560.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40528.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680); contains InterPro domain LisH dimerisation motif (InterPro:IPR006594); contains InterPro domain CTLH, C-terminal Range:  from: 17689896    to: 17693072    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version